Guide to the Human Genome
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Name: LOC100291818 Sequence: fasta or formatted (115aa) NCBI GI: 239753242
Description:

PREDICTED: hypothetical protein XP_002345593

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         10           2
 C cysteine            4.3          5           1
 D aspartate           3.5          4           1
 E glutamate           6.1          7           1
 F phenylalanine       1.7          2           2
 G glycine             7.0          8           2
 H histidine           3.5          4           2
 I isoleucine          0.9          1           1
 K lysine              5.2          6           1
 L leucine            13.0         15           2
 M methionine          3.5          4           1
 N asparagine          0.9          1           1
 P proline             6.1          7           2
 Q glutamine           4.3          5           1
 R arginine            8.7         10           2
 S serine              4.3          5           3
 T threonine           8.7         10           1
 V valine              7.0          8           2
 W tryptophan          0.9          1           1
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345593 
LOC100290730          1.000   PREDICTED: hypothetical protein XP_002348317 
LOC100288133          1.000   PREDICTED: hypothetical protein XP_002342283 
LOC100292757          0.047   PREDICTED: hypothetical protein 
LOC100291505          0.047   PREDICTED: hypothetical protein XP_002347172 
LOC100288189          0.047   PREDICTED: hypothetical protein XP_002343065 
LMO7                  0.042   LIM domain only 7 isoform 2 
LOC100128398          0.019   PREDICTED: hypothetical protein 
LOC100128398          0.019   PREDICTED: hypothetical protein 
LOC100128398          0.019   PREDICTED: hypothetical protein 
HMCN2                 0.009   PREDICTED: hemicentin 2 
HMCN2                 0.009   PREDICTED: hemicentin 2 
QRICH2                0.009   glutamine rich 2 
NT5M                  0.009   5',3'-nucleotidase, mitochondrial precursor 
AFAP1                 0.009   actin filament associated protein 1 isoform a [Homo...
AFAP1                 0.009   actin filament associated protein 1 
HNRNPH1               0.005   heterogeneous nuclear ribonucleoprotein H1 
NUP98                 0.005   nucleoporin 98kD isoform 4 
NUP98                 0.005   nucleoporin 98kD isoform 3 
NUP98                 0.005   nucleoporin 98kD isoform 1 
NUP98                 0.005   nucleoporin 98kD isoform 2 
PCNXL2                0.005   pecanex-like 2 
POLR3C                0.005   polymerase (RNA) III (DNA directed) polypeptide C (6...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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