NUP98 33089

Name: NUP98	Sequence: fasta or formatted (937aa)		NCBI GI: 56549643
Description: nucleoporin 98kD isoform 3		Referenced in: HOX Genes Nucleus and Nucleolus
Other entries for this name: alt prot [1800aa] nucleoporin 98kD isoform 1 alt prot [920aa] nucleoporin 98kD isoform 2 alt prot [1726aa] nucleoporin 98kD isoform 4
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.6 62 2 C cysteine 0.3 3 1 D aspartate 3.5 33 3 E glutamate 4.1 38 5 F phenylalanine 6.8 64 1 G glycine 13.0 122 3 H histidine 1.4 13 1 I isoleucine 2.5 23 2 K lysine 5.4 51 3 L leucine 6.9 65 1 M methionine 1.1 10 1 N asparagine 6.9 65 2 P proline 6.5 61 3 Q glutamine 4.4 41 2 R arginine 2.2 21 2 S serine 10.2 96 3 T threonine 13.1 123 3 V valine 3.0 28 3 W tryptophan 0.2 2 1 Y tyrosine 1.7 16 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 nucleoporin 98kD isoform 3 NUP98 0.975 nucleoporin 98kD isoform 2 NUP98 0.970 nucleoporin 98kD isoform 4 NUP98 0.970 nucleoporin 98kD isoform 1 NUP214 0.044 nucleoporin 214kDa TRO 0.042 trophinin isoform 5 MUC21 0.037 mucin 21 POM121 0.035 nuclear pore membrane protein 121 LOC100288540 0.035 PREDICTED: hypothetical protein XP_002342775 FLG2 0.034 filaggrin family member 2 POM121C 0.033 POM121 membrane glycoprotein (rat)-like LOC729792 0.030 PREDICTED: hypothetical protein LOC729792 0.030 PREDICTED: hypothetical protein LOC100294501 0.030 PREDICTED: hypothetical protein LOC100294249 0.030 PREDICTED: hypothetical protein XP_002344067 LOC100294238 0.030 PREDICTED: hypothetical protein LOC100294204 0.030 PREDICTED: hypothetical protein LOC730401 0.030 PREDICTED: hypothetical protein LOC729792 0.030 PREDICTED: hypothetical protein LOC100294136 0.030 PREDICTED: hypothetical protein LOC100294091 0.030 PREDICTED: hypothetical protein MUC12 0.029 PREDICTED: mucin 12 MUC12 0.029 PREDICTED: mucin 12, cell surface associated NUP153 0.028 nucleoporin 153kDa LOC100130716 0.027 PREDICTED: similar to mucin 11 MUC12 0.026 PREDICTED: mucin 12 NUP62 0.026 nucleoporin 62kDa NUP62 0.026 nucleoporin 62kDa NUP62 0.026 nucleoporin 62kDa NUP62 0.026 nucleoporin 62kDa Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.