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Search of human proteins with 239753150
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753150 PREDICTED: similar to poly(A) binding protein,
cytoplasmic 1 [Homo sapiens]
(94 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753150 PREDICTED: similar to poly(A) binding protein, cyto... 184 1e-47
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 147 1e-36
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 140 2e-34
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 124 1e-29
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 124 1e-29
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 124 1e-29
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 103 2e-23
gi|15147337 ubiquitin protein ligase E3 component n-recognin 5 [... 64 3e-11
gi|239749462 PREDICTED: similar to ubiquitin protein ligase E3 c... 56 7e-09
gi|113420453 PREDICTED: similar to ubiquitin protein ligase E3 c... 56 7e-09
gi|155030202 RAP1, GTP-GDP dissociation stimulator 1 isoform 6 [... 29 0.71
gi|155030200 RAP1, GTP-GDP dissociation stimulator 1 isoform 5 [... 29 0.71
gi|155030198 RAP1, GTP-GDP dissociation stimulator 1 isoform 4 [... 29 0.71
gi|155030196 RAP1, GTP-GDP dissociation stimulator 1 isoform 3 [... 29 0.71
gi|155030194 RAP1, GTP-GDP dissociation stimulator 1 isoform 2 [... 29 0.71
gi|155030192 RAP1, GTP-GDP dissociation stimulator 1 isoform 1 [... 29 0.71
gi|89276766 trophinin isoform 5 [Homo sapiens] 28 1.6
gi|29540551 trophinin isoform 2 [Homo sapiens] 28 1.6
gi|29540541 trophinin isoform 2 [Homo sapiens] 28 1.6
gi|23510413 sorting nexin 26 [Homo sapiens] 28 2.1
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 27 2.7
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 27 3.5
gi|16418463 MAS1 oncogene-like [Homo sapiens] 27 4.6
gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens] 27 4.6
gi|9966793 leucine zipper transcription factor-like 1 [Homo sapi... 27 4.6
gi|4507285 syntaxin 10 [Homo sapiens] 26 6.0
>gi|239753150 PREDICTED: similar to poly(A) binding protein,
cytoplasmic 1 [Homo sapiens]
Length = 94
Score = 184 bits (468), Expect = 1e-47
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MLASAPPQEQKRILGERLFPLIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKVV 60
MLASAPPQEQKRILGERLFPLIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKVV
Sbjct: 1 MLASAPPQEQKRILGERLFPLIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKVV 60
Query: 61 EAVAVLQAHRAKEAAQKAVNSATAVQLFKIDQEP 94
EAVAVLQAHRAKEAAQKAVNSATAVQLFKIDQEP
Sbjct: 61 EAVAVLQAHRAKEAAQKAVNSATAVQLFKIDQEP 94
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 147 bits (372), Expect = 1e-36
Identities = 77/85 (90%), Positives = 80/85 (94%)
Query: 1 MLASAPPQEQKRILGERLFPLIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKVV 60
MLASAPPQEQK++LGERLFPLIQAMHPTLAGKITGM LE DNSELLHMLESPESL SKV
Sbjct: 549 MLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVD 608
Query: 61 EAVAVLQAHRAKEAAQKAVNSATAV 85
EAVAVLQAH+AKEAAQKAVNSAT V
Sbjct: 609 EAVAVLQAHQAKEAAQKAVNSATGV 633
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 140 bits (353), Expect = 2e-34
Identities = 73/84 (86%), Positives = 78/84 (92%)
Query: 2 LASAPPQEQKRILGERLFPLIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKVVE 61
LASAPPQ+QK++LGERLFPLIQAMHPTLAGKITGM LE DNSELL+MLESPESL SKV E
Sbjct: 545 LASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDE 604
Query: 62 AVAVLQAHRAKEAAQKAVNSATAV 85
AVAVLQAH+AKEA QKAVNSAT V
Sbjct: 605 AVAVLQAHQAKEATQKAVNSATGV 628
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 124 bits (312), Expect = 1e-29
Identities = 70/87 (80%), Positives = 75/87 (86%), Gaps = 3/87 (3%)
Query: 1 MLASAPPQEQKRILGERLFPLIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKVV 60
MLA+APPQEQK++LGERLFPLIQ MH LAGKITGM LE DNSELLHMLESPESL SKV
Sbjct: 545 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 604
Query: 61 EAVAVLQAHRA-KEAAQK--AVNSATA 84
EAVAVLQAH A KEAAQK AV +AT+
Sbjct: 605 EAVAVLQAHHAKKEAAQKVGAVAAATS 631
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 124 bits (312), Expect = 1e-29
Identities = 70/87 (80%), Positives = 75/87 (86%), Gaps = 3/87 (3%)
Query: 1 MLASAPPQEQKRILGERLFPLIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKVV 60
MLA+APPQEQK++LGERLFPLIQ MH LAGKITGM LE DNSELLHMLESPESL SKV
Sbjct: 558 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 617
Query: 61 EAVAVLQAHRA-KEAAQK--AVNSATA 84
EAVAVLQAH A KEAAQK AV +AT+
Sbjct: 618 EAVAVLQAHHAKKEAAQKVGAVAAATS 644
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 124 bits (312), Expect = 1e-29
Identities = 70/87 (80%), Positives = 75/87 (86%), Gaps = 3/87 (3%)
Query: 1 MLASAPPQEQKRILGERLFPLIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKVV 60
MLA+APPQEQK++LGERLFPLIQ MH LAGKITGM LE DNSELLHMLESPESL SKV
Sbjct: 574 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 633
Query: 61 EAVAVLQAHRA-KEAAQK--AVNSATA 84
EAVAVLQAH A KEAAQK AV +AT+
Sbjct: 634 EAVAVLQAHHAKKEAAQKVGAVAAATS 660
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 103 bits (258), Expect = 2e-23
Identities = 53/73 (72%), Positives = 62/73 (84%)
Query: 1 MLASAPPQEQKRILGERLFPLIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKVV 60
MLA+AP EQK+++GERL+PLI +H LAGKITGM LE DNSELL MLESPESLH+K+
Sbjct: 535 MLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKID 594
Query: 61 EAVAVLQAHRAKE 73
EAVAVLQAH+A E
Sbjct: 595 EAVAVLQAHQAME 607
>gi|15147337 ubiquitin protein ligase E3 component n-recognin 5 [Homo
sapiens]
Length = 2799
Score = 63.9 bits (154), Expect = 3e-11
Identities = 34/88 (38%), Positives = 51/88 (57%)
Query: 6 PPQEQKRILGERLFPLIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKVVEAVAV 65
P ++ LGERL+P +QAM P A KITGM LE ++LL +L S +SL ++V EA+ +
Sbjct: 2389 PLPAHRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMEL 2448
Query: 66 LQAHRAKEAAQKAVNSATAVQLFKIDQE 93
+ AH + A ++ K+ QE
Sbjct: 2449 IIAHGRENGADSILDLGLVDSSEKVQQE 2476
>gi|239749462 PREDICTED: similar to ubiquitin protein ligase E3
component n-recognin 5 isoform 2 [Homo sapiens]
Length = 2277
Score = 55.8 bits (133), Expect = 7e-09
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 6 PPQEQKRILGERLFPLIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKVVEAVAV 65
P ++ LGERL+P +QAM P A KITGM L+ +S +L S +SL ++V EA+ +
Sbjct: 1868 PLPAHRQALGERLYPRVQAMQPAFASKITGMLLDYPSS-AASLLASEDSLRARVDEAMEL 1926
Query: 66 LQAHRAKEAAQKAVNSATAVQLFKIDQE 93
+ AH + A ++ K+ QE
Sbjct: 1927 IIAHGRENGADSILDLGLVDSSEKVQQE 1954
>gi|113420453 PREDICTED: similar to ubiquitin protein ligase E3
component n-recognin 5 isoform 1 [Homo sapiens]
Length = 2796
Score = 55.8 bits (133), Expect = 7e-09
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 6 PPQEQKRILGERLFPLIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKVVEAVAV 65
P ++ LGERL+P +QAM P A KITGM L+ +S +L S +SL ++V EA+ +
Sbjct: 2387 PLPAHRQALGERLYPRVQAMQPAFASKITGMLLDYPSS-AASLLASEDSLRARVDEAMEL 2445
Query: 66 LQAHRAKEAAQKAVNSATAVQLFKIDQE 93
+ AH + A ++ K+ QE
Sbjct: 2446 IIAHGRENGADSILDLGLVDSSEKVQQE 2473
>gi|155030202 RAP1, GTP-GDP dissociation stimulator 1 isoform 6
[Homo sapiens]
Length = 516
Score = 29.3 bits (64), Expect = 0.71
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 21 LIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKV-----VEAVAVLQAHRAKEAA 75
L+Q +H LA + + ++ ++ L+ L E LH +V ++ V+ L++H K A
Sbjct: 443 LVQILHRLLADERSAPEIKYNSMVLICALMGSECLHKEVQDLAFLDVVSKLRSHENKSVA 502
Query: 76 QKA 78
Q+A
Sbjct: 503 QQA 505
>gi|155030200 RAP1, GTP-GDP dissociation stimulator 1 isoform 5
[Homo sapiens]
Length = 558
Score = 29.3 bits (64), Expect = 0.71
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 21 LIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKV-----VEAVAVLQAHRAKEAA 75
L+Q +H LA + + ++ ++ L+ L E LH +V ++ V+ L++H K A
Sbjct: 485 LVQILHRLLADERSAPEIKYNSMVLICALMGSECLHKEVQDLAFLDVVSKLRSHENKSVA 544
Query: 76 QKA 78
Q+A
Sbjct: 545 QQA 547
>gi|155030198 RAP1, GTP-GDP dissociation stimulator 1 isoform 4
[Homo sapiens]
Length = 559
Score = 29.3 bits (64), Expect = 0.71
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 21 LIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKV-----VEAVAVLQAHRAKEAA 75
L+Q +H LA + + ++ ++ L+ L E LH +V ++ V+ L++H K A
Sbjct: 486 LVQILHRLLADERSAPEIKYNSMVLICALMGSECLHKEVQDLAFLDVVSKLRSHENKSVA 545
Query: 76 QKA 78
Q+A
Sbjct: 546 QQA 548
>gi|155030196 RAP1, GTP-GDP dissociation stimulator 1 isoform 3
[Homo sapiens]
Length = 607
Score = 29.3 bits (64), Expect = 0.71
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 21 LIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKV-----VEAVAVLQAHRAKEAA 75
L+Q +H LA + + ++ ++ L+ L E LH +V ++ V+ L++H K A
Sbjct: 534 LVQILHRLLADERSAPEIKYNSMVLICALMGSECLHKEVQDLAFLDVVSKLRSHENKSVA 593
Query: 76 QKA 78
Q+A
Sbjct: 594 QQA 596
>gi|155030194 RAP1, GTP-GDP dissociation stimulator 1 isoform 2
[Homo sapiens]
Length = 607
Score = 29.3 bits (64), Expect = 0.71
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 21 LIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKV-----VEAVAVLQAHRAKEAA 75
L+Q +H LA + + ++ ++ L+ L E LH +V ++ V+ L++H K A
Sbjct: 534 LVQILHRLLADERSAPEIKYNSMVLICALMGSECLHKEVQDLAFLDVVSKLRSHENKSVA 593
Query: 76 QKA 78
Q+A
Sbjct: 594 QQA 596
>gi|155030192 RAP1, GTP-GDP dissociation stimulator 1 isoform 1
[Homo sapiens]
Length = 608
Score = 29.3 bits (64), Expect = 0.71
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 21 LIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKV-----VEAVAVLQAHRAKEAA 75
L+Q +H LA + + ++ ++ L+ L E LH +V ++ V+ L++H K A
Sbjct: 535 LVQILHRLLADERSAPEIKYNSMVLICALMGSECLHKEVQDLAFLDVVSKLRSHENKSVA 594
Query: 76 QKA 78
Q+A
Sbjct: 595 QQA 597
>gi|89276766 trophinin isoform 5 [Homo sapiens]
Length = 1431
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 43 SELLHMLESPESLHSK-VVEAVAVLQAHRAKEAAQKAVNSATAVQL 87
S+ +H + ES S+ ++ ++ +A +AK+AA KA+ SAT V L
Sbjct: 179 SQNIHAPIANESASSQALITSIKPKKASKAKKAANKAIASATEVSL 224
>gi|29540551 trophinin isoform 2 [Homo sapiens]
Length = 706
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 43 SELLHMLESPESLHSK-VVEAVAVLQAHRAKEAAQKAVNSATAVQL 87
S+ +H + ES S+ ++ ++ +A +AK+AA KA+ SAT V L
Sbjct: 179 SQNIHAPIANESASSQALITSIKPKKASKAKKAANKAIASATEVSL 224
>gi|29540541 trophinin isoform 2 [Homo sapiens]
Length = 706
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 43 SELLHMLESPESLHSK-VVEAVAVLQAHRAKEAAQKAVNSATAVQL 87
S+ +H + ES S+ ++ ++ +A +AK+AA KA+ SAT V L
Sbjct: 179 SQNIHAPIANESASSQALITSIKPKKASKAKKAANKAIASATEVSL 224
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 2 LASAPPQEQKRILGERLFPLIQAMHPTLAGKITG--------MWLETDNSELLHMLESPE 53
L PP + + L PL+ TL+G + W+E DN +L
Sbjct: 122 LPELPPPPEGARAAQMLVPLLLQYLETLSGLVDSNLNCGPVLTWMELDNHGRRLLLSEEA 181
Query: 54 SLHSKVVEAVAVLQAHRAK 72
SL+ V A V++ + A+
Sbjct: 182 SLNIPAVAAAHVIKRYTAQ 200
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 38 LETDNSELLHMLESPESLHSKVVEAVAVL-----QAHRAKEAAQKAVNS-ATAVQLFKID 91
L+T N EL H +E ESL S++ ++ L + R E KA N+ A A+Q + D
Sbjct: 1284 LQTQNGELSHRVEEKESLISQLTKSKQALTQQLEELKRQMEEETKAKNAMAHALQSSRHD 1343
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 26.9 bits (58), Expect = 3.5
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 20 PLIQAMHPTL-----AGKITGMWLETDNSELLHMLESPESLHSKVVEAVAVLQAHRAKEA 74
P I+ HP L A K+ MW T + + L K + +A QA EA
Sbjct: 111 PKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQAKGKPEA 170
Query: 75 AQKAVNSATAVQLFKIDQE 93
A+K V A + K ++E
Sbjct: 171 AKKGVVKAEKSKKKKEEEE 189
>gi|16418463 MAS1 oncogene-like [Homo sapiens]
Length = 378
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 23 QAMHPTLAGKITGMWLETDNSELLHMLES----PESLHSKVVEAVAVL 66
+A +P L ++ G++L+ + +E +HM S ++L ++ AVL
Sbjct: 37 EAQNPNLVSQLCGVFLQNETNETIHMQMSMAVGQQALPLNIIAPKAVL 84
>gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo
sapiens]
Length = 1113
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 27 PTLAGKITGMWLETDNSELLHMLESPESLHSKVVEAVAVL 66
P L + +LET + LH+L + + H K+ V VL
Sbjct: 39 PMLVNTLVDYYLETSSQPALHILTTLQEPHDKMDTDVVVL 78
>gi|9966793 leucine zipper transcription factor-like 1 [Homo
sapiens]
Length = 299
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 9 EQKRILGERLFPLIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKVVEAVAVLQA 68
E+ I P++ P LA G E N E+L + E E L S++ +QA
Sbjct: 118 EKAEITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRL--KTIEIQA 175
Query: 69 HRAKEAAQKAVNSATAVQLFKIDQE 93
A + K + +QL + +Q+
Sbjct: 176 TNALDEKSKLEKALQDLQLDQGNQK 200
>gi|4507285 syntaxin 10 [Homo sapiens]
Length = 249
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 9 EQKRILGERLFPLIQAMHPTLAGKITGMWLETDNSELLHMLESPESLHSKVVEAVAVLQA 68
+++++ ER+ +Q M + +LE +N E+L + + S +++A AV
Sbjct: 86 QERKVFVERMREAVQEMKDHMVSPTAVAFLERNNREILAGKPAAQKSPSDLLDASAVSAT 145
Query: 69 HRAKEAAQ 76
R E Q
Sbjct: 146 SRYIEEQQ 153
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.126 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,189,361
Number of Sequences: 37866
Number of extensions: 106058
Number of successful extensions: 346
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 27
length of query: 94
length of database: 18,247,518
effective HSP length: 65
effective length of query: 29
effective length of database: 15,786,228
effective search space: 457800612
effective search space used: 457800612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.