Guide to the Human Genome
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Name: LOC100290340 Sequence: fasta or formatted (129aa) NCBI GI: 239752639
Description:

PREDICTED: hypothetical protein XP_002347643

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         11           2
 C cysteine            1.6          2           1
 D aspartate           3.9          5           1
 E glutamate           2.3          3           2
 F phenylalanine       3.1          4           1
 G glycine             7.0          9           3
 H histidine           3.9          5           2
 I isoleucine          3.9          5           1
 K lysine              0.8          1           1
 L leucine            13.2         17           2
 M methionine          2.3          3           1
 N asparagine          3.9          5           2
 P proline             7.0          9           1
 Q glutamine           1.6          2           1
 R arginine            3.9          5           1
 S serine              9.3         12           3
 T threonine           8.5         11           1
 V valine              8.5         11           1
 W tryptophan          2.3          3           1
 Y tyrosine            4.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347643 
LOC100293842          0.909   PREDICTED: similar to SLC29A4 protein 
LOC402269             0.860   PREDICTED: similar to SLC29A4 protein 
LOC100287294          0.860   PREDICTED: hypothetical protein XP_002342767 
LOC402269             0.860   PREDICTED: similar to SLC29A4 protein 
LOC728500             0.860   PREDICTED: similar to SLC29A4 protein 
SLC29A4               0.558   solute carrier family 29 (nucleoside transporters),...
SLC29A4               0.558   solute carrier family 29 (nucleoside transporters),...
SLC29A3               0.062   solute carrier family 29 (nucleoside transporters),...
SLC29A2               0.050   solute carrier family 29 (nucleoside transporters), ...
SLC29A1               0.045   equilibrative nucleoside transporter 1 
SLC29A1               0.045   equilibrative nucleoside transporter 1 
SLC29A1               0.045   equilibrative nucleoside transporter 1 
SLC29A1               0.045   equilibrative nucleoside transporter 1 
SLC29A1               0.045   equilibrative nucleoside transporter 1 
SSPO                  0.021   SCO-spondin 
LOC100292406          0.021   PREDICTED: hypothetical protein 
LOC100291258          0.021   PREDICTED: hypothetical protein XP_002346915 
LOC100288357          0.021   PREDICTED: hypothetical protein XP_002342745 
LOC100288357          0.021   PREDICTED: hypothetical protein 
HMCN1                 0.017   hemicentin 1 
KDM4D                 0.017   jumonji domain containing 2D 
MUC5AC                0.012   mucin 5AC 
MUC5B                 0.012   mucin 5, subtype B, tracheobronchial 
THSD4                 0.012   thrombospondin, type I, domain containing 4 
LEPR                  0.012   leptin receptor isoform 3 
LEPR                  0.012   leptin receptor isoform 2 
LEPR                  0.012   leptin receptor isoform 1 
ADAMTS18              0.008   ADAM metallopeptidase with thrombospondin type 1 mot...
THBS2                 0.008   thrombospondin 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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