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Search of human proteins with 239752392
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo
sapiens]
(189 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo ... 395 e-110
gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo ... 395 e-110
gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo ... 43 2e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 42 4e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 42 4e-04
gi|166706868 synaptopodin 2-like isoform a [Homo sapiens] 41 7e-04
gi|50301232 synaptopodin 2-like isoform b [Homo sapiens] 41 7e-04
gi|186928825 dermokine isoform 3 precursor [Homo sapiens] 40 0.001
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 40 0.001
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 40 0.002
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|239754516 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ... 39 0.003
gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo ... 39 0.003
gi|239508758 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|186928827 dermokine isoform 5 precursor [Homo sapiens] 39 0.003
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 39 0.003
gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo s... 39 0.003
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 39 0.003
gi|223633935 hypothetical protein LOC254427 [Homo sapiens] 38 0.005
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 38 0.005
gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo ... 38 0.005
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 38 0.005
gi|126090909 engrailed homeobox 1 [Homo sapiens] 38 0.006
gi|239756028 PREDICTED: hypothetical protein [Homo sapiens] 38 0.006
gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens] 38 0.006
gi|29469071 Rho GTPase-activating protein isoform 2 [Homo sapiens] 38 0.006
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 38 0.006
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ... 37 0.008
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 37 0.008
>gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo
sapiens]
Length = 189
Score = 395 bits (1015), Expect = e-110
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MPTQPPPGSGEVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESS 60
MPTQPPPGSGEVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESS
Sbjct: 1 MPTQPPPGSGEVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESS 60
Query: 61 QKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQ 120
QKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQ
Sbjct: 61 QKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQ 120
Query: 121 SQPNRWLQTARPTHAPAPARPGRQSKRRSRTGFPGRGRGAARKARRLTARLKLLLPLAIR 180
SQPNRWLQTARPTHAPAPARPGRQSKRRSRTGFPGRGRGAARKARRLTARLKLLLPLAIR
Sbjct: 121 SQPNRWLQTARPTHAPAPARPGRQSKRRSRTGFPGRGRGAARKARRLTARLKLLLPLAIR 180
Query: 181 FCQSRCWCR 189
FCQSRCWCR
Sbjct: 181 FCQSRCWCR 189
>gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo
sapiens]
Length = 189
Score = 395 bits (1015), Expect = e-110
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MPTQPPPGSGEVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESS 60
MPTQPPPGSGEVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESS
Sbjct: 1 MPTQPPPGSGEVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESS 60
Query: 61 QKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQ 120
QKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQ
Sbjct: 61 QKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQ 120
Query: 121 SQPNRWLQTARPTHAPAPARPGRQSKRRSRTGFPGRGRGAARKARRLTARLKLLLPLAIR 180
SQPNRWLQTARPTHAPAPARPGRQSKRRSRTGFPGRGRGAARKARRLTARLKLLLPLAIR
Sbjct: 121 SQPNRWLQTARPTHAPAPARPGRQSKRRSRTGFPGRGRGAARKARRLTARLKLLLPLAIR 180
Query: 181 FCQSRCWCR 189
FCQSRCWCR
Sbjct: 181 FCQSRCWCR 189
>gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo
sapiens]
Length = 271
Score = 42.7 bits (99), Expect = 2e-04
Identities = 44/134 (32%), Positives = 57/134 (42%), Gaps = 22/134 (16%)
Query: 44 RPTASSQPAGAWHSESSQKGTACP-----LAL-GRGGARGGGQ----RKSRSGARAPGQP 93
R A +QP G +E + G+A LAL G G+RG G + S R+PG P
Sbjct: 22 RENARAQPRG--RAEEDKLGSAAAWKVAELALPGGSGSRGEGPTPSLKPSAQCVRSPGVP 79
Query: 94 AE-AGLSASPEKTRPEGRAE------RGRAVVWQSQPNRWLQTARPTHAPAPARPGRQSK 146
GL +P+ P A RG + +S+P R RP P PA P R
Sbjct: 80 RSLGGLCRAPDPALPVSVAVPPCPACRGPQSISRSRPRR---AVRPRPGPWPAAPSRGPV 136
Query: 147 RRSRTGFPGRGRGA 160
R R PGR G+
Sbjct: 137 RSCRGPRPGRALGS 150
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 41.6 bits (96), Expect = 4e-04
Identities = 50/163 (30%), Positives = 62/163 (38%), Gaps = 27/163 (16%)
Query: 5 PPPGSGEVRQSPSGNGALVPTGQG-CRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKG 63
P PG G RQ P P GQ G P P+ P+ +S P +SQ
Sbjct: 468 PQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAP----QQPASQ-- 521
Query: 64 TACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEG--RAERGRAVVWQS 121
A P G+G R+SR A PG P A ASP R G +A R +V +
Sbjct: 522 -AAPPTQGQG-------RQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPA 573
Query: 122 QPNR-------WLQTARPTHAPAPARPGRQSKRRS---RTGFP 154
P + P P PA P RQ+ + RTG P
Sbjct: 574 PPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPP 616
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 41.6 bits (96), Expect = 4e-04
Identities = 50/163 (30%), Positives = 62/163 (38%), Gaps = 27/163 (16%)
Query: 5 PPPGSGEVRQSPSGNGALVPTGQG-CRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKG 63
P PG G RQ P P GQ G P P+ P+ +S P +SQ
Sbjct: 468 PQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAP----QQPASQ-- 521
Query: 64 TACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEG--RAERGRAVVWQS 121
A P G+G R+SR A PG P A ASP R G +A R +V +
Sbjct: 522 -AAPPTQGQG-------RQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPA 573
Query: 122 QPNR-------WLQTARPTHAPAPARPGRQSKRRS---RTGFP 154
P + P P PA P RQ+ + RTG P
Sbjct: 574 PPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPP 616
>gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]
Length = 977
Score = 40.8 bits (94), Expect = 7e-04
Identities = 42/147 (28%), Positives = 57/147 (38%), Gaps = 6/147 (4%)
Query: 33 NLPIQGYSPEGRPTASSQPAGAWHSESSQKGTACPLALGRGGARGGGQRKSRSGAR--AP 90
N + G SP P SSQ S +S + P++ R G + S AP
Sbjct: 496 NDSLGGLSPAPPPFLSSQGPTPLPSFTSGVPSHAPVSGSPSTPRSSGPVTATSSLYIPAP 555
Query: 91 GQPAEAGLSASPEKTRPEGRAERGRAVVWQSQPNRWLQTARP-THAPAPARPGRQSKRRS 149
+P G + P P A A ++ S P R +ARP AP P P S R
Sbjct: 556 SRPVTPGGAPEPPAP-PSAAAMTSTASIFLSAPLR--PSARPEAPAPGPGAPEPPSAREQ 612
Query: 150 RTGFPGRGRGAARKARRLTARLKLLLP 176
R P G ++ARR R ++ P
Sbjct: 613 RISVPAARTGILQEARRRGTRKQMFRP 639
>gi|50301232 synaptopodin 2-like isoform b [Homo sapiens]
Length = 753
Score = 40.8 bits (94), Expect = 7e-04
Identities = 42/147 (28%), Positives = 57/147 (38%), Gaps = 6/147 (4%)
Query: 33 NLPIQGYSPEGRPTASSQPAGAWHSESSQKGTACPLALGRGGARGGGQRKSRSGAR--AP 90
N + G SP P SSQ S +S + P++ R G + S AP
Sbjct: 272 NDSLGGLSPAPPPFLSSQGPTPLPSFTSGVPSHAPVSGSPSTPRSSGPVTATSSLYIPAP 331
Query: 91 GQPAEAGLSASPEKTRPEGRAERGRAVVWQSQPNRWLQTARP-THAPAPARPGRQSKRRS 149
+P G + P P A A ++ S P R +ARP AP P P S R
Sbjct: 332 SRPVTPGGAPEPPAP-PSAAAMTSTASIFLSAPLR--PSARPEAPAPGPGAPEPPSAREQ 388
Query: 150 RTGFPGRGRGAARKARRLTARLKLLLP 176
R P G ++ARR R ++ P
Sbjct: 389 RISVPAARTGILQEARRRGTRKQMFRP 415
>gi|186928825 dermokine isoform 3 precursor [Homo sapiens]
Length = 416
Score = 40.4 bits (93), Expect = 0.001
Identities = 41/171 (23%), Positives = 60/171 (35%), Gaps = 19/171 (11%)
Query: 7 PGSGEVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKGTAC 66
PG G VR S G P P G SS G S+S G+
Sbjct: 215 PGYGSVRASNQNEGCTNPP---------------PSGSGGGSSNSGGGSGSQSGSSGSGS 259
Query: 67 PLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERG-RAVVWQSQPNR 125
G + GG S SG + G + G S + +R + +E + S N
Sbjct: 260 NGDNNNGSSSGGSSSGSSSGGSSGG--SSGGSSGNSGGSRGDSGSESSWGSSTGSSSGNH 317
Query: 126 WLQTARPTHAPAPARPGRQSKRRSRTGFPG-RGRGAARKARRLTARLKLLL 175
H P +PG +++ +G G RG+G + R ++ LL
Sbjct: 318 GGSGGGNGHKPGCEKPGNEARGSGESGIQGFRGQGVSSNMREISKEGNRLL 368
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 40.0 bits (92), Expect = 0.001
Identities = 50/175 (28%), Positives = 70/175 (40%), Gaps = 18/175 (10%)
Query: 7 PGSGEVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPT----ASSQPAGAWHSESSQK 62
PG R +P+ + PT Q P +PEG A S GA + +
Sbjct: 412 PGGRAARPTPAASAT--PTAQPLPQPPAP---RAPEGDDFLSLHAESDGEGALQVDLGEP 466
Query: 63 GTACPLALGRGGA-----RGGGQRKSRSGARAPGQ-PAEAGLSASPEKTRPEGRAERGRA 116
A P A R G + QR+ R R+P PA A +A+ TR + R ER R+
Sbjct: 467 APAPPAADSRWGGLDLRRKILTQRRERYRQRSPSPAPAPAPAAAAGPPTRKKSRRERKRS 526
Query: 117 VVWQSQPNRWLQTARPTHAPAPARPGRQSKRRSRTGFPG-RGRGAARKARRLTAR 170
+++ + PAPA P K RSR PG +AR+ R +R
Sbjct: 527 --GEAKEAASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSR 579
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 39.7 bits (91), Expect = 0.002
Identities = 45/163 (27%), Positives = 58/163 (35%), Gaps = 22/163 (13%)
Query: 4 QPPPGSGEVRQSPSGNGALVPTG-------QGCRGRNLPIQGYSPEGRPTASSQPAGAWH 56
Q PPG + SP G G + P G G RG P G + +P
Sbjct: 380 QGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEP----- 434
Query: 57 SESSQKGTACPLA-LGRGGARGGGQRKSRSGA-RAPGQPAEAGL-SASPEKTRPEGRAER 113
++ KG P G G G K G +PG+P GL A+ E+ P R
Sbjct: 435 GKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPA 494
Query: 114 G-RAVVWQSQPNRWLQTARPTHAPAPARPGRQSKRRSRTGFPG 155
G + + P A AP PA P + R G PG
Sbjct: 495 GPNGIPGEKGP------AGERGAPGPAGPRGAAGEPGRDGVPG 531
Score = 36.2 bits (82), Expect = 0.017
Identities = 37/114 (32%), Positives = 43/114 (37%), Gaps = 18/114 (15%)
Query: 6 PPGSGEVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKGTA 65
PPG +P NG P G+G RG G EG P + P G S G
Sbjct: 805 PPGPAGFPGAPGQNGE--PGGKGERGA----PGEKGEGGPPGVAGPPGG----SGPAGPP 854
Query: 66 CPLAL-GRGGARGGGQRKSRSGAR-------APGQPAEAGLSASPEKTRPEGRA 111
P + G G+ GG GAR + G P G S SP K P G A
Sbjct: 855 GPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPA 908
Score = 35.8 bits (81), Expect = 0.023
Identities = 51/163 (31%), Positives = 64/163 (39%), Gaps = 27/163 (16%)
Query: 6 PPGSGEVRQSPSGNGALVPTGQ-GCRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKGT 64
PPG R SP G +G+ G G + P+G P + AG + +
Sbjct: 961 PPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGT-AGEPGRDGNPGSD 1019
Query: 65 ACPLALGRGGARGG-GQRKSRSGARAPGQPAEAGLSASPEKTRPEGRA-ERGRAVVWQSQ 122
P GR G+ GG G R APG P G P P G++ +RG +S
Sbjct: 1020 GLP---GRDGSPGGKGDRGENGSPGAPGAPGHPG---PPGPVGPAGKSGDRG-----ESG 1068
Query: 123 PNRWLQTARPTHAPAPA----RPGRQSKRRSRTGFPGRGRGAA 161
P A P AP PA PG Q R + G G RGAA
Sbjct: 1069 P------AGPAGAPGPAGSRGAPGPQGPRGDK-GETGE-RGAA 1103
Score = 34.7 bits (78), Expect = 0.050
Identities = 39/123 (31%), Positives = 47/123 (38%), Gaps = 19/123 (15%)
Query: 6 PPGSGEVRQSPSGNGALVPTGQ-------GCRGRNLPIQGYS----PEGRPTASSQPAGA 54
PPG+ SP G + P G G RG P QG++ P G P + P G
Sbjct: 337 PPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGP-QGHAGAQGPPGPPGINGSPGG- 394
Query: 55 WHSESSQKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAG-LSASPEKTRPEGRAER 113
+ P A G GARG +G APG AG + K P R ER
Sbjct: 395 ---KGEMGPAGIPGAPGLMGARGPPGPAGANG--APGLRGGAGEPGKNGAKGEPGPRGER 449
Query: 114 GRA 116
G A
Sbjct: 450 GEA 452
Score = 30.8 bits (68), Expect = 0.73
Identities = 43/155 (27%), Positives = 49/155 (31%), Gaps = 10/155 (6%)
Query: 7 PGSGEVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKGTAC 66
PG R P G G QG G+N P G PT G Q
Sbjct: 590 PGKNGERGGPGGPGP-----QGPPGKNGETGPQGPPG-PTGPGGDKGDTGPPGPQGLQGL 643
Query: 67 PLALGRGGARGG-GQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERG--RAVVWQSQP 123
P G G G G+ + A APG P G + +P + P G A R P
Sbjct: 644 PGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGP 703
Query: 124 NRWLQTARPTHAP-APARPGRQSKRRSRTGFPGRG 157
A P P A PG Q R G G
Sbjct: 704 EGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPG 738
Score = 30.0 bits (66), Expect = 1.2
Identities = 50/194 (25%), Positives = 61/194 (31%), Gaps = 41/194 (21%)
Query: 6 PPG------SGEVRQSPSGNGALVPTGQ---GCRGRNLPIQGYSPEGRPTASSQPAG--- 53
PPG +G SP + V +G G G P P G P S P
Sbjct: 137 PPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGS 196
Query: 54 -AWHSESSQKGTACPLAL-GRGGARGGGQRKSRSGARA-PGQPAEAGLSASPEKTRPEG- 109
+ + G A P G GA G + G PG+P E GL P P G
Sbjct: 197 PGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGI 256
Query: 110 ------RAERGRAVVWQSQPNRWLQTARP-----------THAPAPARPGRQSKRRSRTG 152
+ RG + + +T P AP P P R R G
Sbjct: 257 PGFPGMKGHRG----FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPG 312
Query: 153 FPG----RGRGAAR 162
PG RG AR
Sbjct: 313 LPGAAGARGNDGAR 326
Score = 29.6 bits (65), Expect = 1.6
Identities = 43/151 (28%), Positives = 54/151 (35%), Gaps = 13/151 (8%)
Query: 7 PGSGEVRQSPSGNGALVPTGQ-GCRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKGTA 65
PG+ P G + P G+ G RG + P P G P PAG+ + Q
Sbjct: 1040 PGAPGAPGHPGPPGPVGPAGKSGDRGESGPA---GPAGAPG----PAGSRGAPGPQGPRG 1092
Query: 66 CPLALGRGGARG-GGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQSQPN 124
G GA G G R APG P AG + P G RG V P
Sbjct: 1093 DKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAG--PRG-PVGPSGPPG 1149
Query: 125 RWLQTARPTHAPAPARPGRQSKRRSRTGFPG 155
+ + P P G + +R S G PG
Sbjct: 1150 KDGTSGHPGPIGPPGPRGNRGERGSE-GSPG 1179
Score = 28.9 bits (63), Expect = 2.8
Identities = 31/102 (30%), Positives = 36/102 (35%), Gaps = 9/102 (8%)
Query: 2 PTQPPPGSGEVRQ-SPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESS 60
PT P G+ P G L TG G G N P+G A P G ++
Sbjct: 622 PTGPGGDKGDTGPPGPQGLQGLPGTG-GPPGENGKPGEPGPKGDAGAPGAPGGK--GDAG 678
Query: 61 QKGTACPLALG-----RGGARGGGQRKSRSGARAPGQPAEAG 97
G P L RGGA G + A PG P AG
Sbjct: 679 APGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAG 720
Score = 28.5 bits (62), Expect = 3.6
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 43/167 (25%)
Query: 6 PPGSGEVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKGTA 65
PPG G GA P G +QG E S P G + G
Sbjct: 700 PPGP------EGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKG---DKGEPGGPG 750
Query: 66 CPLALGRGGARG----------GGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGR 115
G+ G RG GQ + APG P AG SP ERG
Sbjct: 751 ADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSP--------GERG- 801
Query: 116 AVVWQSQPNRWLQTARPTHAPAPARPGRQSK--RRSRTGFPG-RGRG 159
+T P A P PG+ + + G PG +G G
Sbjct: 802 ------------ETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEG 836
Score = 28.1 bits (61), Expect = 4.7
Identities = 24/89 (26%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 15 SPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKGTACPLALGRGG 74
+P G+ P GQ QG P P G + P +G G
Sbjct: 1114 NPGAPGSPGPAGQ---------QGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPG 1164
Query: 75 ARGG-GQRKSRSGARAPGQPAEAGLSASP 102
RG G+R S PGQP G +P
Sbjct: 1165 PRGNRGERGSEGSPGHPGQPGPPGPPGAP 1193
Score = 27.7 bits (60), Expect = 6.1
Identities = 32/98 (32%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 7 PGSGEVRQSPSGNGALVPTGQ-GCRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKGTA 65
PG R NG TG G +G N G E P GA ++G
Sbjct: 260 PGMKGHRGFDGRNGEKGETGAPGLKGEN----GLPGENGAPGPMGPRGA----PGERGR- 310
Query: 66 CPLALGRGGARGG-GQRKSRSGARAPGQPAEAGLSASP 102
P G GARG G R S PG P AG SP
Sbjct: 311 -PGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSP 347
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 39.3 bits (90), Expect = 0.002
Identities = 34/92 (36%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 72 RGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQSQPNRWLQTAR 131
+GG GGGQ + R +RAPG A + SP R GRA QS
Sbjct: 9 QGGGGGGGQGRHRHSSRAPGTRTPATPARSPRPPLCAPRPAPGRA---QSPVPAAGAVPS 65
Query: 132 PTHAPAPARPGRQSKRRSRTGFPG-RGRGAAR 162
P A PARP R T PG RGR R
Sbjct: 66 PPAAAHPARPA----LRGETPAPGRRGRATTR 93
>gi|239754516 PREDICTED: hypothetical protein [Homo sapiens]
Length = 334
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 59 SSQKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVV 118
S G C ++ G RG G R++ GA A G+ + S P T GR ERGR V
Sbjct: 17 SDTAGVTCRVSSQDGDRRGLG-REAAPGAPAEGEKEKGKNSRRPRPTCSRGRTERGR--V 73
Query: 119 WQSQPNRWLQTARPTHAPAPA 139
+ ++ P H P PA
Sbjct: 74 ERGADHQERPAGAPAHRPVPA 94
>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
sapiens]
Length = 334
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 59 SSQKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVV 118
S G C ++ G RG G R++ GA A G+ + S P T GR ERGR V
Sbjct: 17 SDTAGVTCRVSSQDGDRRGLG-REAAPGAPAEGEKEKGKNSRRPRPTCSRGRTERGR--V 73
Query: 119 WQSQPNRWLQTARPTHAPAPA 139
+ ++ P H P PA
Sbjct: 74 ERGADHQERPAGAPAHRPVPA 94
>gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo
sapiens]
Length = 329
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 59 SSQKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVV 118
S G C ++ G RG G R++ GA A G+ + S P T GR ERGR V
Sbjct: 12 SDTAGVTCRVSSQDGDRRGLG-REAAPGAPAEGEKEKGKNSRRPRPTCSRGRTERGR--V 68
Query: 119 WQSQPNRWLQTARPTHAPAPA 139
+ ++ P H P PA
Sbjct: 69 ERGADHQERPAGAPAHRPVPA 89
>gi|239508758 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 59 SSQKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVV 118
S G C ++ G RG G R++ GA A G+ + S P T GR ERGR V
Sbjct: 12 SDTAGVTCRVSSQDGDRRGLG-REAAPGAPAEGEKEKGKNSRRPRPTCSRGRTERGR--V 68
Query: 119 WQSQPNRWLQTARPTHAPAPA 139
+ ++ P H P PA
Sbjct: 69 ERGADHQERPAGAPAHRPVPA 89
>gi|186928827 dermokine isoform 5 precursor [Homo sapiens]
Length = 398
Score = 38.9 bits (89), Expect = 0.003
Identities = 39/161 (24%), Positives = 56/161 (34%), Gaps = 19/161 (11%)
Query: 7 PGSGEVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKGTAC 66
PG G VR S G P P G SS G S+S G+
Sbjct: 215 PGYGSVRASNQNEGCTNPP---------------PSGSGGGSSNSGGGSGSQSGSSGSGS 259
Query: 67 PLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERG-RAVVWQSQPNR 125
G + GG S SG + G + G S + +R + +E + S N
Sbjct: 260 NGDNNNGSSSGGSSSGSSSGGSSGG--SSGGSSGNSGGSRGDSGSESSWGSSTGSSSGNH 317
Query: 126 WLQTARPTHAPAPARPGRQSKRRSRTGFPG-RGRGAARKAR 165
H P +PG +++ +G G RG+G + R
Sbjct: 318 GGSGGGNGHKPGCEKPGNEARGSGESGIQGFRGQGVSSNMR 358
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 38.5 bits (88), Expect = 0.003
Identities = 40/159 (25%), Positives = 60/159 (37%), Gaps = 17/159 (10%)
Query: 14 QSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPT------ASSQPAGAWHSESSQKGTACP 67
+ PSG+ L + + P GR + S + G W E+ + P
Sbjct: 869 RDPSGSAGLDARRPWAGSQEAELSREGPYGRESDHHAREGSLEQPGFWEGEAERGKAGDP 928
Query: 68 LALGRGGARGGGQRKSRSGA---RAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQSQPN 124
R R GG R+SRSG+ A G+ P + PE +AER +++
Sbjct: 929 HR--RHVHRQGGSRESRSGSPRTGADGEHRRHRAHRRPGEEGPEDKAER------RARHR 980
Query: 125 RWLQTARPTHAPAPARPGRQSKRRSRTGFPGRGRGAARK 163
+ AR G + +RR R G P G AR+
Sbjct: 981 EGSRPARGGEGEGEGPDGGERRRRHRHGAPATYEGDARR 1019
Score = 27.7 bits (60), Expect = 6.1
Identities = 32/143 (22%), Positives = 46/143 (32%), Gaps = 15/143 (10%)
Query: 24 PTGQGCRGRNLPIQ----GYSPEGRPTASSQPAGAWHSESSQKGTACPLALGRGGARGGG 79
PTG GR+ ++ G + P A W + P G RG
Sbjct: 2355 PTGGHSSGRSPRMERRVPGPARSESPRACRHGGARWPASGPHVSEGPPGPRHHGYYRGSD 2414
Query: 80 QRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQSQPNRWLQTARPTHAPAPA 139
++ G+ A AG +P R GR+ +T R + PA A
Sbjct: 2415 YDEADGPGSGGGEEAMAGAYDAPPPVRHASSGATGRSP----------RTPRAS-GPACA 2463
Query: 140 RPGRQSKRRSRTGFPGRGRGAAR 162
P R +R +P G R
Sbjct: 2464 SPSRHGRRLPNGYYPAHGLARPR 2486
>gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo
sapiens]
Length = 2261
Score = 38.5 bits (88), Expect = 0.003
Identities = 40/159 (25%), Positives = 60/159 (37%), Gaps = 17/159 (10%)
Query: 14 QSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPT------ASSQPAGAWHSESSQKGTACP 67
+ PSG+ L + + P GR + S + G W E+ + P
Sbjct: 870 RDPSGSAGLDARRPWAGSQEAELSREGPYGRESDHHAREGSLEQPGFWEGEAERGKAGDP 929
Query: 68 LALGRGGARGGGQRKSRSGA---RAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQSQPN 124
R R GG R+SRSG+ A G+ P + PE +AER +++
Sbjct: 930 HR--RHVHRQGGSRESRSGSPRTGADGEHRRHRAHRRPGEEGPEDKAER------RARHR 981
Query: 125 RWLQTARPTHAPAPARPGRQSKRRSRTGFPGRGRGAARK 163
+ AR G + +RR R G P G AR+
Sbjct: 982 EGSRPARGGEGEGEGPDGGERRRRHRHGAPATYEGDARR 1020
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 38.5 bits (88), Expect = 0.003
Identities = 45/175 (25%), Positives = 61/175 (34%), Gaps = 23/175 (13%)
Query: 5 PPPGSGEVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPT----------ASSQPAGA 54
P P G SP NG GR P +SP +P+ A++ P
Sbjct: 300 PSPSGGSGWGSPQRNGGSGQRSGAHGGR--PGSAHSPPDKPSSPSPRVRDKAAAAAPTPP 357
Query: 55 WHSESSQKGTACPLALGRGG-ARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAER 113
+ S + P + GRGG A GG R+ R R + A + RP R
Sbjct: 358 ARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPR 417
Query: 114 GRAVVWQSQPNRWLQTARPTHAPAPAR--PGRQSKRRSRTGFPGRGRGAARKARR 166
G +R L AR + R PG + S G G G+ A + R
Sbjct: 418 G--------SSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPR 464
>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
Length = 435
Score = 38.1 bits (87), Expect = 0.005
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 12/135 (8%)
Query: 47 ASSQPAGAWHSESSQKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEA-GLSASPE-- 103
A + PA E + G + P + RG G R+G +AP PA A G ++ E
Sbjct: 293 AGAFPAAGDAGEGAPGGGSSPERVARGRGLPGPAESLRAGGQAPRGPALANGFPSAHEAL 352
Query: 104 KTRPEGRAERGRAVVWQSQPNRWLQTARPTHAPAPARPGRQSKRRSRTGFPG-------- 155
K+ P A G+++ ++ P AR + P P +P R P
Sbjct: 353 KSAPSSFAPAGKSLCFRPGPALPSTRARQSF-PGPRQPNGAQDWRRADSLPRPQGITVQF 411
Query: 156 RGRGAARKARRLTAR 170
GRG++ +ARR R
Sbjct: 412 AGRGSSEEARREALR 426
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 38.1 bits (87), Expect = 0.005
Identities = 39/130 (30%), Positives = 51/130 (39%), Gaps = 11/130 (8%)
Query: 35 PIQGYSPEGRPTASSQPAGAWHSESSQKGTACPLALGRGGARGGGQRKSRSGARAPGQPA 94
P QG +P P + AGA S++ C GR RS PG P
Sbjct: 9 PHQGGTPRPLPAS----AGAQGSQARSGLRLCRTTQGRPAGGASPPPSPRSRPEGPGPPR 64
Query: 95 EAGLSASPEKTRPEGRAERGRAVVWQSQPNRWLQTARP-THAPAPARPGRQSKRRSRTGF 153
A+P RP+G + A +Q +R LQ A P APA A R R+ G
Sbjct: 65 ----PATPSARRPQGLSAGVSA--GPAQRSRPLQLAGPRDRAPARALHARTRMGRAARGP 118
Query: 154 PGRGRGAARK 163
P RG ++
Sbjct: 119 PAPSRGPLKR 128
Score = 32.3 bits (72), Expect = 0.25
Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 72 RGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQSQPNRWLQTAR 131
RG +GG R + A A G A +GL R +GR S P +R
Sbjct: 7 RGPHQGGTPRPLPASAGAQGSQARSGLRLC--------RTTQGRPAGGASPPPS--PRSR 56
Query: 132 PTHAPAPARPGRQSKRRSRTGFPGRGRGAARKARRL 167
P P P RP S RR + G G A+++R L
Sbjct: 57 P-EGPGPPRPATPSARRPQGLSAGVSAGPAQRSRPL 91
>gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo
sapiens]
Length = 190
Score = 38.1 bits (87), Expect = 0.005
Identities = 36/115 (31%), Positives = 47/115 (40%), Gaps = 12/115 (10%)
Query: 70 LGRGGARGGGQRKSRSG---ARAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQS----- 121
LGRGG G GQ G A + + E+G SP R G A RGR
Sbjct: 25 LGRGGGAGPGQSGPGHGQGTATSWARTGESGAGPSPAWRRCAGEASRGRQRARSGPPKSP 84
Query: 122 -QPNRWLQTARPTHAPAPARPGRQSKRRSRTGFPGRGRGAARKARRLTARLKLLL 175
+P+ L+ AR A A R+ R+ G+P R + RL+LLL
Sbjct: 85 RRPDAQLRAARTQRARAQTPQLRREDARAGDGWPRREEDDVPPEEK---RLRLLL 136
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 38.1 bits (87), Expect = 0.005
Identities = 39/130 (30%), Positives = 51/130 (39%), Gaps = 11/130 (8%)
Query: 35 PIQGYSPEGRPTASSQPAGAWHSESSQKGTACPLALGRGGARGGGQRKSRSGARAPGQPA 94
P QG +P P + AGA S++ C GR RS PG P
Sbjct: 9 PHQGGTPRPLPAS----AGAQGSQARSGLRLCRTTQGRPAGGASPPPSPRSRPEGPGPPR 64
Query: 95 EAGLSASPEKTRPEGRAERGRAVVWQSQPNRWLQTARP-THAPAPARPGRQSKRRSRTGF 153
A+P RP+G + A +Q +R LQ A P APA A R R+ G
Sbjct: 65 ----PATPSARRPQGLSAGVSA--GPAQRSRPLQLAGPRDRAPARALHARTRMGRAARGP 118
Query: 154 PGRGRGAARK 163
P RG ++
Sbjct: 119 PAPSRGPLKR 128
Score = 32.3 bits (72), Expect = 0.25
Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 72 RGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQSQPNRWLQTAR 131
RG +GG R + A A G A +GL R +GR S P +R
Sbjct: 7 RGPHQGGTPRPLPASAGAQGSQARSGLRLC--------RTTQGRPAGGASPPPS--PRSR 56
Query: 132 PTHAPAPARPGRQSKRRSRTGFPGRGRGAARKARRL 167
P P P RP S RR + G G A+++R L
Sbjct: 57 P-EGPGPPRPATPSARRPQGLSAGVSAGPAQRSRPL 91
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 37.7 bits (86), Expect = 0.006
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 6/137 (4%)
Query: 38 GYSPEGRPTASSQPAGAWHSESSQKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAG 97
G S G P A++ A A + ++ A P G GG+ GG G + P A
Sbjct: 191 GASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGNPAI 250
Query: 98 LSASPEKTRPEGRAERGRAVVWQSQPNRWLQTARPTHAPAPARPGRQSKRRSRTGFPGRG 157
L P + + + +VW + W+ R + P+ R+ K++ R
Sbjct: 251 LLMGSANGGPVVKTDSQQPLVWPA----WVYCTRYSDRPSSGPRTRKLKKKKNEKEDKRP 306
Query: 158 RGA--ARKARRLTARLK 172
R A A + +RL A +
Sbjct: 307 RTAFTAEQLQRLKAEFQ 323
Score = 27.3 bits (59), Expect = 8.0
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 4 QPPPG---SGEVRQSPSGNGALV-PTGQGCRGRNL--PIQGYSPEGRPTASSQPAGAWHS 57
QPPP + R G G + GQ GR+ P+ +P + A
Sbjct: 121 QPPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPP 180
Query: 58 ESSQKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKT 105
+ SQ P A G G ++ G + + A A A A +A P T
Sbjct: 181 DGSQ-----PAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDT 223
>gi|239756028 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 37.7 bits (86), Expect = 0.006
Identities = 34/96 (35%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 33 NLPIQGYSPE--GRPTASSQPAGAWHSESSQKGTACPLALGRGGARGGGQRKSRSGARAP 90
+LP G SP+ G P + +G W S + +G A P A+G ARGG S+S
Sbjct: 96 SLPRGGASPQCDGGPKSQGGKSG-WLSVPASRGVAPPGAMGILRARGGRGTGSQS----- 149
Query: 91 GQPAEAGLSASPEKTRPEGRAERGRAVVWQSQPNRW 126
P A L P RA GR V +S P RW
Sbjct: 150 --PLPASLGVPPPPAMGVQRARGGRGVGSESPP-RW 182
>gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens]
Length = 2087
Score = 37.7 bits (86), Expect = 0.006
Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 2 PTQPPPGSGEVRQSPSGNGALVPTGQGCRGRN-----LPIQGYSPEGRPTASSQPAGAWH 56
P PPP Q P T G + +P+ PE P A PA A+
Sbjct: 1305 PLPPPPSQRSAEQPPVVGQVQAATNIGLNNSHKVQGVVPVPERPPE--PRAMDDPASAFI 1362
Query: 57 SESSQKGTACPLALGRGGARGGGQRKSRSGARAP 90
S+S CP+A + G K R GAR P
Sbjct: 1363 SDSGAAAAQCPMAT---AVQPGLPEKVRDGARVP 1393
>gi|29469071 Rho GTPase-activating protein isoform 2 [Homo sapiens]
Length = 1738
Score = 37.7 bits (86), Expect = 0.006
Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 2 PTQPPPGSGEVRQSPSGNGALVPTGQGCRGRN-----LPIQGYSPEGRPTASSQPAGAWH 56
P PPP Q P T G + +P+ PE P A PA A+
Sbjct: 956 PLPPPPSQRSAEQPPVVGQVQAATNIGLNNSHKVQGVVPVPERPPE--PRAMDDPASAFI 1013
Query: 57 SESSQKGTACPLALGRGGARGGGQRKSRSGARAP 90
S+S CP+A + G K R GAR P
Sbjct: 1014 SDSGAAAAQCPMAT---AVQPGLPEKVRDGARVP 1044
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 37.7 bits (86), Expect = 0.006
Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 32/192 (16%)
Query: 5 PPPGSG-EVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKG 63
P PGS E+ SP+ G+ R ++ ++P R S PA A S +
Sbjct: 445 PAPGSHREISSSPTSKNR--SHGRAKRDKS---HSHTPSRRMGRSRSPATAKRGRSRSR- 498
Query: 64 TACPLALGRGGARGGGQRKSRSGAR--APGQPAEAGLSASPEK-----TRPEGRAERGRA 116
P G +R R+SRS R P G S SP++ +R R R R+
Sbjct: 499 --TPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRS 556
Query: 117 VVWQSQPNRWLQTARPTHAPAPARPGRQ---------------SKRRSRTGFPG-RGRGA 160
+R T + + PAR GR ++RRSR+ P RGR
Sbjct: 557 ARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSR 616
Query: 161 ARKARRLTARLK 172
+R R +R +
Sbjct: 617 SRTPARRRSRTR 628
Score = 37.7 bits (86), Expect = 0.006
Identities = 46/156 (29%), Positives = 61/156 (39%), Gaps = 36/156 (23%)
Query: 25 TGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKGTACPLALGRGGARGGGQRKSR 84
+G +GR G SPEG + S P H S+ R G+R + K++
Sbjct: 1638 SGSSSKGR-----GPSPEGSSSTESSPE---HPPKSR--------TARRGSRSSPEPKTK 1681
Query: 85 SGARAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQSQPNRWLQTARPTH-------APA 137
S R P P +SPE TR + R R+ S P +T P H +P
Sbjct: 1682 S--RTP--PRRRSSRSSPELTRKARLSRRSRSA--SSSPETRSRTP-PRHRRSPSVSSPE 1734
Query: 138 PARPGRQSKRRSRTGFP------GRGRGAARKARRL 167
PA R S+RR P RGR + K R L
Sbjct: 1735 PAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGL 1770
Score = 34.3 bits (77), Expect = 0.066
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 29/142 (20%)
Query: 43 GRPTASSQPAGAWHSESSQKGTACPLALGRGGARGG---GQRKSRSGARAPGQPAEAGLS 99
GR + +P + + ++G + GR +R G+ +SR+ PA G S
Sbjct: 532 GRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRT-------PARRGRS 584
Query: 100 ASPEKTRPEGRAERGRAVVWQSQPNRWLQTARPTHAPAPARPGRQ-----SKRRSRTGFP 154
S P R R R T R + + PAR GR ++RRSRT P
Sbjct: 585 RS---RTPARRRSRSRT-----------PTRRRSRSRTPARRGRSRSRTPARRRSRTRSP 630
Query: 155 GRGRGAARKARRLTARLKLLLP 176
R R +R R + R + P
Sbjct: 631 VRRRSRSRSPARRSGRSRSRTP 652
Score = 33.5 bits (75), Expect = 0.11
Identities = 47/158 (29%), Positives = 64/158 (40%), Gaps = 25/158 (15%)
Query: 30 RGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKGTACPLALGRGGARGGGQRKSRSGARA 89
R RN +G S R S + A S + P GR +R +R+SRS R
Sbjct: 544 RSRNTQRRGRSRSARRGRSHSRSPATRGRSRSR---TPARRGRSRSRTPARRRSRS--RT 598
Query: 90 PGQ-------PAEAGLSASPEKTRPEGRAERGRAVVWQSQPNRW-LQTARPTHAPAPARP 141
P + PA G S S P R R R+ V + +R + + + + PAR
Sbjct: 599 PTRRRSRSRTPARRGRSRS---RTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655
Query: 142 GRQSKR------RSRTGFPGRGRGAARK---ARRLTAR 170
GR R RSR+ P R G +R ARR +R
Sbjct: 656 GRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSR 693
Score = 31.6 bits (70), Expect = 0.43
Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 30/164 (18%)
Query: 14 QSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKGTACPLALGRG 73
+SP+ G RGR+ + +P R + S P + + P GR
Sbjct: 565 RSPATRGRSRSRTPARRGRS---RSRTPARRRSRSRTPT------RRRSRSRTPARRGRS 615
Query: 74 GARGGGQRKSR--------SGARAPGQPAEAGLSASPEK---TRPEGRAERGRAVVWQSQ 122
+R +R+SR S +R+P + + S +P + +R A RGR+
Sbjct: 616 RSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRS------ 669
Query: 123 PNRWLQTARPTHAPAPARPGRQSKRRSRTGFPGRGRGAARKARR 166
R AR + P R+ + RSRT P RGR +R R
Sbjct: 670 --RSRTPARRSGRSRSRTPARRGRSRSRT--PRRGRSRSRSLVR 709
Score = 30.8 bits (68), Expect = 0.73
Identities = 40/140 (28%), Positives = 53/140 (37%), Gaps = 23/140 (16%)
Query: 21 ALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQKGTACPLALGRGGARGGGQ 80
A P GQ R + P P S+ S S+ T PL R +R G
Sbjct: 1529 ARTPLGQRSRSGSSQELDVKPSASPQERSESDS---SPDSKAKTRTPL---RQRSRSGSS 1582
Query: 81 RKSRSGARAPGQPAEAGLSAS-PEKTRPEGRAERGRAVVWQSQPNRWLQTARPTHAPAPA 139
+ S +R + + +G S +K R RA+ G S P APAP
Sbjct: 1583 PEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGS----DSSPE--------PKAPAP- 1629
Query: 140 RPGRQSKRRSRTGFPGRGRG 159
R RRSR+G +GRG
Sbjct: 1630 ---RALPRRSRSGSSSKGRG 1646
>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
sapiens]
Length = 306
Score = 37.4 bits (85), Expect = 0.008
Identities = 43/159 (27%), Positives = 59/159 (37%), Gaps = 25/159 (15%)
Query: 4 QPPPGSGEVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQK- 62
+P G+G+ R S S + A QG + R E A+ P + H +K
Sbjct: 95 RPAGGTGQRRGSRSSSSA---DQQGAQDR---------EEEAAAAPAPTSSGHRTEKRKP 142
Query: 63 -GTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQS 121
C A G G RG G S RA + EA +A+P T R E+ + + Q
Sbjct: 143 QQPQCRPAAGTGQRRGSGCSPSADQQRAQDREEEA--TAAPVPTSSGHRTEKRKRLQLQC 200
Query: 122 QPNRWLQTARPTHAPAPARPGRQSKRRSRTGFPGRGRGA 160
Q P R R S R G G+ RG+
Sbjct: 201 Q---------PAGGTGQRRGSRSSPSRQPAGGTGQRRGS 230
Score = 34.3 bits (77), Expect = 0.066
Identities = 38/138 (27%), Positives = 49/138 (35%), Gaps = 14/138 (10%)
Query: 26 GQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESSQK--GTACPLALGRGGARGGGQRKS 83
G GC + E TA+ P + H +K C A G G RG S
Sbjct: 158 GSGCSPSADQQRAQDREEEATAAPVPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSRSSPS 217
Query: 84 RSGARAPGQPAEAGLSASPEKTRPEGRAERGRAVVWQSQPNRWLQTARPTHAPAPARPGR 143
R A GQ + S S ++ R + R E +QP R RP R G
Sbjct: 218 RQPAGGTGQRRGSRSSPSADQQRAQDREEEA------AQPQR-----RPAGGTGQRR-GT 265
Query: 144 QSKRRSRTGFPGRGRGAA 161
+ TG G+ RG A
Sbjct: 266 AAAPVPTTGGTGQRRGTA 283
Score = 27.7 bits (60), Expect = 6.1
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 17/105 (16%)
Query: 61 QKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASP-------EKTRPEGRAER 113
Q+ C A G G RG G S A + EA + +P EK +P+ R
Sbjct: 36 QQQPQCQPAGGTGQRRGSGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRR 95
Query: 114 GRAVVWQSQPNRWLQTA----------RPTHAPAPARPGRQSKRR 148
Q + +R +A APAP G ++++R
Sbjct: 96 PAGGTGQRRGSRSSSSADQQGAQDREEEAAAAPAPTSSGHRTEKR 140
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 37.4 bits (85), Expect = 0.008
Identities = 44/166 (26%), Positives = 59/166 (35%), Gaps = 13/166 (7%)
Query: 1 MPTQPPPGSGEVRQSPSGNGALVPTGQGCRGRNLPIQGYSPEGRPTASSQPAGAWHSESS 60
+P +PP G V + P R LP++ + P R AW S
Sbjct: 59 LPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQP 118
Query: 61 QK----GTACPLALGRGGARG--GGQRKSRSGARA-PGQPAEAGLSASPEKTRPEGRAER 113
G + LAL G A G QR SG R+ PG P SP G +R
Sbjct: 119 APRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPG------SPRGGGTVGPGDR 172
Query: 114 GRAVVWQSQPNRWLQTARPTHAPAPARPGRQSKRRSRTGFPGRGRG 159
G A +P R ++ A A A + +S G P +G
Sbjct: 173 GPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQG 218
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,099,890
Number of Sequences: 37866
Number of extensions: 629060
Number of successful extensions: 5560
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 667
Number of HSP's that attempted gapping in prelim test: 4657
Number of HSP's gapped (non-prelim): 1492
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.