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Search of human proteins with 239752210
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752210 PREDICTED: hypothetical protein [Homo sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757723 PREDICTED: hypothetical protein [Homo sapiens] 270 2e-73
gi|239752210 PREDICTED: hypothetical protein [Homo sapiens] 270 2e-73
gi|239746733 PREDICTED: hypothetical protein [Homo sapiens] 265 6e-72
gi|169212153 PREDICTED: hypothetical protein [Homo sapiens] 73 6e-14
gi|169211716 PREDICTED: hypothetical protein [Homo sapiens] 73 6e-14
gi|169211169 PREDICTED: hypothetical protein [Homo sapiens] 73 6e-14
gi|169194706 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-05
gi|169201915 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-05
gi|169191953 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-05
gi|169162130 PREDICTED: tetratricopeptide repeat domain 34 [Homo... 32 0.19
gi|169208422 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|239745055 PREDICTED: hypothetical protein XP_002343352 [Homo ... 32 0.19
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 30 0.41
gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Ho... 30 0.54
gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Ho... 30 0.54
gi|239756916 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo ... 30 0.54
gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo ... 30 0.54
gi|50428933 C1q domain containing 1 isoform 1 [Homo sapiens] 30 0.54
gi|50428931 C1q domain containing 1 isoform 3 [Homo sapiens] 30 0.54
gi|23503235 C1q domain containing 1 isoform 2 [Homo sapiens] 30 0.54
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 30 0.54
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 30 0.71
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 29 1.2
gi|157502184 kinesin family member 6 [Homo sapiens] 28 1.6
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 28 1.6
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 28 1.6
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 28 1.6
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 28 1.6
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 28 1.6
>gi|239757723 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 270 bits (691), Expect = 2e-73
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW 60
MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW
Sbjct: 1 MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW 60
Query: 61 LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP 120
LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP
Sbjct: 61 LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP 120
Query: 121 AEVMTEECGL 130
AEVMTEECGL
Sbjct: 121 AEVMTEECGL 130
>gi|239752210 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 270 bits (691), Expect = 2e-73
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW 60
MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW
Sbjct: 1 MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW 60
Query: 61 LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP 120
LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP
Sbjct: 61 LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP 120
Query: 121 AEVMTEECGL 130
AEVMTEECGL
Sbjct: 121 AEVMTEECGL 130
>gi|239746733 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 265 bits (678), Expect = 6e-72
Identities = 128/130 (98%), Positives = 128/130 (98%)
Query: 1 MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW 60
MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQ PKPW
Sbjct: 1 MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQPPKPW 60
Query: 61 LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP 120
LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ EGP
Sbjct: 61 LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQTEGP 120
Query: 121 AEVMTEECGL 130
AEVMTEECGL
Sbjct: 121 AEVMTEECGL 130
>gi|169212153 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 73.2 bits (178), Expect = 6e-14
Identities = 45/86 (52%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 23 ARAACSMEKAKARDKRETRPFQVGVRASWML-LQLPKPWLQTQASLCSQGPEGQVGAPPS 81
A+AA SME A DK E PFQV + LQLPK L+ + S C+ G + + GAPPS
Sbjct: 106 AKAAHSMEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHS-CALGSQEKAGAPPS 164
Query: 82 QAQLQLPKPWLQTQASLHSWGPRKAP 107
QAQL+ KP LQTQA LHSWG + P
Sbjct: 165 QAQLEPFKPQLQTQAPLHSWGLGRPP 190
>gi|169211716 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 73.2 bits (178), Expect = 6e-14
Identities = 45/86 (52%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 23 ARAACSMEKAKARDKRETRPFQVGVRASWML-LQLPKPWLQTQASLCSQGPEGQVGAPPS 81
A+AA SME A DK E PFQV + LQLPK L+ + S C+ G + + GAPPS
Sbjct: 106 AKAAHSMEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHS-CALGSQEKAGAPPS 164
Query: 82 QAQLQLPKPWLQTQASLHSWGPRKAP 107
QAQL+ KP LQTQA LHSWG + P
Sbjct: 165 QAQLEPFKPQLQTQAPLHSWGLGRPP 190
>gi|169211169 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 73.2 bits (178), Expect = 6e-14
Identities = 45/86 (52%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 23 ARAACSMEKAKARDKRETRPFQVGVRASWML-LQLPKPWLQTQASLCSQGPEGQVGAPPS 81
A+AA SME A DK E PFQV + LQLPK L+ + S C+ G + + GAPPS
Sbjct: 106 AKAAHSMEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHS-CALGSQEKAGAPPS 164
Query: 82 QAQLQLPKPWLQTQASLHSWGPRKAP 107
QAQL+ KP LQTQA LHSWG + P
Sbjct: 165 QAQLEPFKPQLQTQAPLHSWGLGRPP 190
>gi|169194706 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 45.4 bits (106), Expect = 1e-05
Identities = 39/96 (40%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 29 MEKAKARDKRETRPFQVGVRASWMLLQLP---KPWLQTQASLCSQGPEGQVGAPPSQAQL 85
ME A DK E PFQV ++ QLP + TQA LCS AP
Sbjct: 1 MEPVGAGDKHEPCPFQVDGVGAYQA-QLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGIT 59
Query: 86 QLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGPA 121
WLQ QASLHS G RKAP +Q E PA
Sbjct: 60 VATLLWLQIQASLHSQGSRKAPFPPRAQ----EAPA 91
>gi|169201915 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 45.4 bits (106), Expect = 1e-05
Identities = 39/96 (40%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 29 MEKAKARDKRETRPFQVGVRASWMLLQLP---KPWLQTQASLCSQGPEGQVGAPPSQAQL 85
ME A DK E PFQV ++ QLP + TQA LCS AP
Sbjct: 1 MEPVGAGDKHEPCPFQVDGVGAYQA-QLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGIT 59
Query: 86 QLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGPA 121
WLQ QASLHS G RKAP +Q E PA
Sbjct: 60 VATLLWLQIQASLHSQGSRKAPFPPRAQ----EAPA 91
>gi|169191953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 45.4 bits (106), Expect = 1e-05
Identities = 39/96 (40%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 29 MEKAKARDKRETRPFQVGVRASWMLLQLP---KPWLQTQASLCSQGPEGQVGAPPSQAQL 85
ME A DK E PFQV ++ QLP + TQA LCS AP
Sbjct: 1 MEPVGAGDKHEPCPFQVDGVGAYQA-QLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGIT 59
Query: 86 QLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGPA 121
WLQ QASLHS G RKAP +Q E PA
Sbjct: 60 VATLLWLQIQASLHSQGSRKAPFPPRAQ----EAPA 91
>gi|169162130 PREDICTED: tetratricopeptide repeat domain 34 [Homo
sapiens]
Length = 901
Score = 31.6 bits (70), Expect = 0.19
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 42 PFQVGVRASWMLLQLPKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSW 101
PF G R + +PW Q S + G+P S LP P + T+ L W
Sbjct: 12 PFLCGWRHAAPAATCTEPWSQAHGSPTHPNHTCEAGSPSSSTAPDLP-PCVPTELLLSPW 70
Query: 102 GPRKAPLVAGSQGPQKE 118
R + GSQ ++
Sbjct: 71 PTRSDHINGGSQAGSEQ 87
>gi|169208422 PREDICTED: hypothetical protein [Homo sapiens]
Length = 100
Score = 31.6 bits (70), Expect = 0.19
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 55 QLPKPWLQTQASLCSQG--PEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGS 112
Q P+ W S+ + G EGQ G P Q LP PW Q S PRK + GS
Sbjct: 39 QSPETW-----SVAASGHPAEGQAGGP----QWWLPGPWTQGATGFASPLPRKHRRLWGS 89
Query: 113 QGP 115
GP
Sbjct: 90 GGP 92
>gi|239745055 PREDICTED: hypothetical protein XP_002343352 [Homo
sapiens]
Length = 100
Score = 31.6 bits (70), Expect = 0.19
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 55 QLPKPWLQTQASLCSQG--PEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGS 112
Q P+ W S+ + G EGQ G P Q LP PW Q S PRK + GS
Sbjct: 39 QSPETW-----SVAASGHPAEGQAGGP----QWWLPGPWTQGATGFASPLPRKHRRLWGS 89
Query: 113 QGP 115
GP
Sbjct: 90 GGP 92
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 30.4 bits (67), Expect = 0.41
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 70 QGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ 116
+GP+G+VGAP S+ + P ++ GPR P G GPQ
Sbjct: 308 EGPKGEVGAPGSKGEAGPTGP----MGAMGPLGPRGMPGERGRLGPQ 350
Score = 27.3 bits (59), Expect = 3.5
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 14/53 (26%)
Query: 69 SQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQG-PQKEGP 120
+QGP G G P S ++ P GP AP AG G P KEGP
Sbjct: 901 TQGPPGATGFPGSAGRVGPP-------------GPAGAPGPAGPLGEPGKEGP 940
>gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Homo
sapiens]
Length = 880
Score = 30.0 bits (66), Expect = 0.54
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 61 LQTQASLCSQGPEGQVGAPPSQAQLQ--LPKPWLQTQASLHSW-------GPRKAPLVAG 111
L+ SLCS P + +PPS+AQ LP+P L TQ L SW R+ P ++G
Sbjct: 453 LRRAGSLCS--PLDEPVSPPSRAQRSRSLPQPKLGTQ--LPSWLLAPASRPQRRRPFLSG 508
Query: 112 SQGPQ 116
+ P+
Sbjct: 509 DEDPK 513
>gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Homo
sapiens]
Length = 880
Score = 30.0 bits (66), Expect = 0.54
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 61 LQTQASLCSQGPEGQVGAPPSQAQLQ--LPKPWLQTQASLHSW-------GPRKAPLVAG 111
L+ SLCS P + +PPS+AQ LP+P L TQ L SW R+ P ++G
Sbjct: 453 LRRAGSLCS--PLDEPVSPPSRAQRSRSLPQPKLGTQ--LPSWLLAPASRPQRRRPFLSG 508
Query: 112 SQGPQ 116
+ P+
Sbjct: 509 DEDPK 513
>gi|239756916 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 30.0 bits (66), Expect = 0.54
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 56 LPKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKP 90
LP P + SLCS G Q G P +Q QL+ P+P
Sbjct: 47 LPGPCSEPPTSLCSLGSLSQFGKPGAQLQLR-PRP 80
>gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo
sapiens]
Length = 490
Score = 30.0 bits (66), Expect = 0.54
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 56 LPKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKP 90
LP P + SLCS G Q G P +Q QL+ P+P
Sbjct: 47 LPGPCSEPPTSLCSLGSLSQFGKPGAQLQLR-PRP 80
>gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo
sapiens]
Length = 522
Score = 30.0 bits (66), Expect = 0.54
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 56 LPKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKP 90
LP P + SLCS G Q G P +Q QL+ P+P
Sbjct: 47 LPGPCSEPPTSLCSLGSLSQFGKPGAQLQLR-PRP 80
>gi|50428933 C1q domain containing 1 isoform 1 [Homo sapiens]
Length = 1127
Score = 30.0 bits (66), Expect = 0.54
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 13 PSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPWLQTQAS------ 66
PS+W Q ++A E+ K ++ + P Q+ + Q PK W + S
Sbjct: 469 PSQWKQDTPKSKAGYVQEEQKKQETPKLWPVQL-QKEQDPKKQTPKSWTPSMQSEQNTTK 527
Query: 67 -----LCSQGPEGQVGAPPS---QAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQ 113
+C + Q P S + Q Q+Q S SWG A L+ Q
Sbjct: 528 SWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQISPKSWGVATASLIPNDQ 582
>gi|50428931 C1q domain containing 1 isoform 3 [Homo sapiens]
Length = 793
Score = 30.0 bits (66), Expect = 0.54
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 13 PSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPWLQTQAS------ 66
PS+W Q ++A E+ K ++ + P Q+ + Q PK W + S
Sbjct: 136 PSQWKQDTPKSKAGYVQEEQKKQETPKLWPVQL-QKEQDPKKQTPKSWTPSMQSEQNTTK 194
Query: 67 -----LCSQGPEGQVGAPPS---QAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQ 113
+C + Q P S + Q Q+Q S SWG A L+ Q
Sbjct: 195 SWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQISPKSWGVATASLIPNDQ 249
>gi|23503235 C1q domain containing 1 isoform 2 [Homo sapiens]
Length = 1077
Score = 30.0 bits (66), Expect = 0.54
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 13 PSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPWLQTQAS------ 66
PS+W Q ++A E+ K ++ + P Q+ + Q PK W + S
Sbjct: 469 PSQWKQDTPKSKAGYVQEEQKKQETPKLWPVQL-QKEQDPKKQTPKSWTPSMQSEQNTTK 527
Query: 67 -----LCSQGPEGQVGAPPS---QAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQ 113
+C + Q P S + Q Q+Q S SWG A L+ Q
Sbjct: 528 SWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQISPKSWGVATASLIPNDQ 582
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 30.0 bits (66), Expect = 0.54
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 71 GPEGQVG--APPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP 120
GP+G +G PP +Q P Q H G + P G QGP +GP
Sbjct: 724 GPQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGP 775
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 29.6 bits (65), Expect = 0.71
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 55 QLPKPWLQTQASLCSQGPEGQVGAPPSQAQ----LQLPKPWLQTQASLHSWGPRKAPLVA 110
QL KP L + + GPE + APP + + L P P+ + H G R P
Sbjct: 275 QLTKPGLWSTLHGDAWGPERKGSAPPERQEQRHSLPHPYPYPAPAYTAHPPGHRLVPAAP 334
Query: 111 GSQGPQKEG 119
GP+ G
Sbjct: 335 PGPGPRPPG 343
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 28.9 bits (63), Expect = 1.2
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 47 VRASWMLLQLPKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKA 106
++ +W L Q+ P + SLC Q P+ G PP P +SL S P A
Sbjct: 88 LQTNWHLPQMSSPPSAARHSLCLQ-PDS--GGPPELG--SSPPVLCSNSSSLGSSTPTGA 142
Query: 107 PLVAGSQGPQKEGPAE 122
G G Q PAE
Sbjct: 143 ACAPGDYGRQALSPAE 158
>gi|157502184 kinesin family member 6 [Homo sapiens]
Length = 814
Score = 28.5 bits (62), Expect = 1.6
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 22/135 (16%)
Query: 6 GHLEQLLPSRWLQQLGMA----------------RAACSMEKAKARDKR---ETRPFQVG 46
GHL++ + R +QQ+ + + +E+ K R K + +V
Sbjct: 604 GHLKEEITQRHIQQVALGISENMAVPLMPDQQEEKLRSQLEEEKRRYKTMFTRLKALKVE 663
Query: 47 VRASWMLLQLPKPWLQTQASL--CSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPR 104
+ +L+ K LQ + + + QV +P + L KP+LQT S H W
Sbjct: 664 IEHLQLLMDKAKVKLQKEFEVWWAEEATNLQVNSPAVNS-LDHTKPFLQTSDSQHEWSQL 722
Query: 105 KAPLVAGSQGPQKEG 119
+ +G Q +G
Sbjct: 723 LSNKSSGGWEVQDQG 737
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 28.5 bits (62), Expect = 1.6
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 71 GPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ----KEGPAEVMTE 126
GP G G P + ++ LP P GPR P G GPQ K+GP V E
Sbjct: 473 GPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 528
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 28.5 bits (62), Expect = 1.6
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 71 GPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ----KEGPAEVMTE 126
GP G G P + ++ LP P GPR P G GPQ K+GP V E
Sbjct: 422 GPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 477
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 28.5 bits (62), Expect = 1.6
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 71 GPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ----KEGPAEVMTE 126
GP G G P + ++ LP P GPR P G GPQ K+GP V E
Sbjct: 411 GPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 466
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 28.5 bits (62), Expect = 1.6
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 71 GPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ----KEGPAEVMTE 126
GP G G P + ++ LP P GPR P G GPQ K+GP V E
Sbjct: 413 GPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 468
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 28.5 bits (62), Expect = 1.6
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 71 GPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ----KEGPAEVMTE 126
GP G G P + ++ LP P GPR P G GPQ K+GP V E
Sbjct: 416 GPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 471
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.128 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,062,698
Number of Sequences: 37866
Number of extensions: 285710
Number of successful extensions: 1145
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1075
Number of HSP's gapped (non-prelim): 116
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.