Guide to the Human Genome
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Name: LOC730163 Sequence: fasta or formatted (130aa) NCBI GI: 239746733
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {130aa} PREDICTED: hypothetical protein
alt prot {130aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         16           3
 C cysteine            2.3          3           1
 D aspartate           0.8          1           1
 E glutamate           6.2          8           2
 F phenylalanine       0.8          1           1
 G glycine             8.5         11           1
 H histidine           1.5          2           1
 I isoleucine          0.0          0           0
 K lysine              4.6          6           1
 L leucine            11.5         15           2
 M methionine          4.6          6           2
 N asparagine          0.0          0           0
 P proline            10.8         14           2
 Q glutamine          12.3         16           2
 R arginine            5.4          7           1
 S serine              6.9          9           1
 T threonine           3.8          5           1
 V valine              3.8          5           1
 W tryptophan          3.8          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730163             0.976   PREDICTED: hypothetical protein 
LOC730163             0.976   PREDICTED: hypothetical protein 
LOC100128559          0.183   PREDICTED: hypothetical protein 
LOC100128559          0.183   PREDICTED: hypothetical protein 
LOC100128559          0.183   PREDICTED: hypothetical protein 
LOC100129214          0.081   PREDICTED: hypothetical protein 
LOC100129214          0.081   PREDICTED: hypothetical protein 
LOC100129214          0.081   PREDICTED: hypothetical protein 
LOC100133065          0.028   PREDICTED: hypothetical protein 
LOC100287326          0.028   PREDICTED: hypothetical protein XP_002343352 
WDR33                 0.024   WD repeat domain 33 isoform 1 
COL5A2                0.020   alpha 2 type V collagen preproprotein 
TTC34                 0.020   PREDICTED: tetratricopeptide repeat domain 34 [Homo...
PIK3R5                0.020   phosphoinositide-3-kinase, regulatory subunit 5 [Ho...
PIK3R5                0.020   phosphoinositide-3-kinase, regulatory subunit 5 [Ho...
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.020   PREDICTED: hypothetical protein LOC80164 
CAPRIN2               0.020   C1q domain containing 1 isoform 1 
CAPRIN2               0.020   C1q domain containing 1 isoform 3 
CAPRIN2               0.020   C1q domain containing 1 isoform 2 
ETV5                  0.020   ets variant gene 5 (ets-related molecule) 
BAT3                  0.016   HLA-B associated transcript-3 isoform b 
BAT3                  0.016   HLA-B associated transcript-3 isoform b 
BAT3                  0.016   HLA-B associated transcript-3 isoform b 
KIF6                  0.016   kinesin family member 6 
ARID1B                0.016   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
LOC100293869          0.012   PREDICTED: hypothetical protein 
LOC100291040          0.012   PREDICTED: hypothetical protein XP_002347839 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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