Guide to the Human Genome
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Name: OTUD7B Sequence: fasta or formatted (843aa) NCBI GI: 118026942
Description:

zinc finger protein Cezanne

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         54           2
 C cysteine            1.4         12           2
 D aspartate           4.9         41           2
 E glutamate           8.5         72           2
 F phenylalanine       2.8         24           1
 G glycine            10.3         87           5
 H histidine           2.7         23           1
 I isoleucine          2.5         21           1
 K lysine              5.9         50           4
 L leucine             9.1         77           2
 M methionine          2.3         19           1
 N asparagine          3.0         25           2
 P proline             7.9         67           3
 Q glutamine           4.2         35           2
 R arginine            6.4         54           3
 S serine              9.4         79           3
 T threonine           3.6         30           2
 V valine              4.9         41           3
 W tryptophan          1.5         13           2
 Y tyrosine            2.3         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein Cezanne 
OTUD7A                0.513   OTU domain containing 7A 
TNFAIP3               0.093   tumor necrosis factor, alpha-induced protein 3 
ZRANB1                0.056   zinc finger, RAN-binding domain containing 1 protei...
LOC100291825          0.019   PREDICTED: similar to hCG1982161 
LOC100290512          0.019   PREDICTED: hypothetical protein XP_002347561 
LOC100288637          0.019   PREDICTED: hypothetical protein XP_002343400 
SF3B4                 0.013   splicing factor 3b, subunit 4 
VCPIP1                0.012   valosin containing protein (p97)/p47 complex interac...
NBEAL2                0.011   neurobeachin-like 2 
GAS2L1                0.011   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.011   growth arrest-specific 2 like 1 isoform a 
DIAPH1                0.010   diaphanous 1 isoform 2 
DIAPH1                0.010   diaphanous 1 isoform 1 
IRS2                  0.010   insulin receptor substrate 2 
CHERP                 0.010   calcium homeostasis endoplasmic reticulum protein [...
COL11A1               0.010   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.010   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.010   alpha 1 type XI collagen isoform A preproprotein [Ho...
ZFAND5                0.009   zinc finger, AN1-type domain 5 
ZFAND5                0.009   zinc finger, AN1-type domain 5 
ZFAND5                0.009   zinc finger, AN1-type domain 5 
CDV3                  0.009   carnitine deficiency-associated gene expressed in v...
CDV3                  0.009   carnitine deficiency-associated gene expressed in ven...
ZFAND6                0.009   zinc finger, AN1-type domain 6 
NKAP                  0.009   NFKB activating protein 
LOC100127891          0.009   PREDICTED: hypothetical protein 
SF1                   0.009   splicing factor 1 isoform 2 
ANXA7                 0.009   annexin VII isoform 2 
PNN                   0.009   pinin, desmosome associated protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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