Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100133070 Sequence: fasta or formatted (497aa) NCBI GI: 239751619
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {497aa} PREDICTED: hypothetical protein
alt mRNA {497aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         56           3
 C cysteine            1.2          6           1
 D aspartate           4.4         22           1
 E glutamate           4.0         20           2
 F phenylalanine       3.6         18           1
 G glycine            14.7         73           3
 H histidine           4.6         23           1
 I isoleucine          2.2         11           1
 K lysine              1.4          7           1
 L leucine            12.7         63           3
 M methionine          0.4          2           1
 N asparagine          0.4          2           1
 P proline             6.8         34           3
 Q glutamine           8.9         44           3
 R arginine            5.8         29           1
 S serine              3.0         15           2
 T threonine           2.8         14           1
 V valine             10.5         52           2
 W tryptophan          0.8          4           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133070          1.000   PREDICTED: hypothetical protein 
LOC100133070          1.000   PREDICTED: hypothetical protein 
LOC100128440          0.010   PREDICTED: hypothetical protein 
LOC100128440          0.010   PREDICTED: hypothetical protein 
LOC100128440          0.010   PREDICTED: hypothetical protein 
LOC100292415          0.007   PREDICTED: hypothetical protein 
LOC100292866          0.007   PREDICTED: hypothetical protein 
LOC100288577          0.007   PREDICTED: hypothetical protein 
LOC100290853          0.007   PREDICTED: hypothetical protein XP_002348232 
LOC100288577          0.007   PREDICTED: hypothetical protein XP_002343267 
LOC100288457          0.007   PREDICTED: hypothetical protein XP_002342255 
ZNF45                 0.006   zinc finger protein 45 
HBA1                  0.006   alpha 1 globin 
LOC100293729          0.006   PREDICTED: hypothetical protein 
LOC100291350          0.006   PREDICTED: hypothetical protein XP_002347249 
LOC100288909          0.006   PREDICTED: hypothetical protein XP_002343114 
HBA2                  0.006   alpha 2 globin 
COL16A1               0.006   alpha 1 type XVI collagen precursor 
PCF11                 0.006   pre-mRNA cleavage complex II protein Pcf11 
LOC100292090          0.005   PREDICTED: hypothetical protein XP_002345529 
COL3A1                0.005   collagen type III alpha 1 preproprotein 
SVIL                  0.005   supervillin isoform 2 
ZNF628                0.005   zinc finger protein 628 
ZFP28                 0.004   zinc finger protein 28 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press