Guide to the Human Genome
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Name: LOC100128440 Sequence: fasta or formatted (200aa) NCBI GI: 169211438
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {200aa} PREDICTED: hypothetical protein
alt mRNA {200aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         22           2
 C cysteine            4.0          8           1
 D aspartate           0.5          1           1
 E glutamate           3.0          6           1
 F phenylalanine       1.0          2           1
 G glycine            14.0         28           3
 H histidine           1.0          2           1
 I isoleucine          1.5          3           1
 K lysine              1.0          2           1
 L leucine            11.0         22           3
 M methionine          1.0          2           1
 N asparagine          0.5          1           1
 P proline            16.0         32           3
 Q glutamine           3.5          7           2
 R arginine           15.5         31           2
 S serine              7.0         14           2
 T threonine           3.0          6           1
 V valine              3.5          7           1
 W tryptophan          1.5          3           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128440          1.000   PREDICTED: hypothetical protein 
LOC100128440          1.000   PREDICTED: hypothetical protein 
LOC100291220          0.073   PREDICTED: hypothetical protein XP_002347633 
LOC100287224          0.073   PREDICTED: hypothetical protein XP_002343483 
LOC100292865          0.055   PREDICTED: hypothetical protein 
LOC100291061          0.043   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.043   PREDICTED: hypothetical protein XP_002343855 
LOC100292589          0.038   PREDICTED: hypothetical protein 
LOC100290121          0.038   PREDICTED: hypothetical protein XP_002346879 
LOC100289406          0.038   PREDICTED: hypothetical protein XP_002342721 
SFPQ                  0.038   splicing factor proline/glutamine rich (polypyrimidin...
ADAMTS13              0.038   ADAM metallopeptidase with thrombospondin type 1 mot...
LOC100287063          0.038   PREDICTED: hypothetical protein 
LOC100130360          0.038   PREDICTED: hypothetical protein 
LOC100292934          0.035   PREDICTED: hypothetical protein 
LOC100287256          0.035   PREDICTED: hypothetical protein 
LOC100287256          0.035   PREDICTED: hypothetical protein XP_002342497 
SYN1                  0.035   synapsin I isoform Ia 
SYN1                  0.035   synapsin I isoform Ib 
TMEM88B               0.035   PREDICTED: hypothetical protein LOC643965 
LOC400236             0.035   PREDICTED: hypothetical protein 
LOC400236             0.035   PREDICTED: hypothetical protein 
NSD1                  0.033   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.033   nuclear receptor binding SET domain protein 1 isofor...
TMEM88B               0.030   hypothetical protein LOC643965 
LOC100293496          0.030   PREDICTED: hypothetical protein 
LOC645321             0.030   PREDICTED: hypothetical protein 
LOC100127930          0.030   PREDICTED: hypothetical protein 
LOC645321             0.030   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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