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Search of human proteins with 239750436
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750436 PREDICTED: similar to microtubule-associated
protein 1 light chain 3 beta [Homo sapiens]
(105 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755918 PREDICTED: similar to microtubule-associated protei... 214 9e-57
gi|239750436 PREDICTED: similar to microtubule-associated protei... 214 9e-57
gi|239744738 PREDICTED: similar to microtubule-associated protei... 214 9e-57
gi|12383056 microtubule-associated proteins 1A/1B light chain 3 ... 154 2e-38
gi|148277548 microtubule-associated protein 1 light chain 3 beta... 150 2e-37
gi|169183885 PREDICTED: similar to microtubule-associated protei... 141 1e-34
gi|169179756 PREDICTED: similar to microtubule-associated protei... 141 1e-34
gi|169180155 PREDICTED: similar to microtubule-associated protei... 141 1e-34
gi|31563518 microtubule-associated protein 1 light chain 3 alpha... 134 2e-32
gi|14210522 microtubule-associated protein 1 light chain 3 alpha... 134 2e-32
gi|51972260 microtubule-associated protein 1 light chain 3 gamma... 91 3e-19
gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo sapi... 60 4e-10
gi|13899219 GABA(A) receptor-associated protein like 1 [Homo sap... 51 2e-07
gi|6005764 GABA(A) receptor-associated protein [Homo sapiens] 49 1e-06
gi|153791466 AMIGO protein [Homo sapiens] 33 0.063
gi|4507537 nuclear receptor subfamily 2, group E, member 1 [Homo... 29 0.69
gi|38261969 APG12 autophagy 12-like [Homo sapiens] 28 2.0
gi|207028821 RNA binding motif protein 44 [Homo sapiens] 27 2.6
gi|50582996 multiple C2 domains, transmembrane 1 isoform S [Homo... 27 2.6
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom... 27 2.6
gi|157694524 plexin D1 [Homo sapiens] 27 4.5
gi|94536836 2-oxoglutarate and iron-dependent oxygenase domain c... 26 5.9
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 26 7.7
>gi|239755918 PREDICTED: similar to microtubule-associated protein 1
light chain 3 beta [Homo sapiens]
Length = 105
Score = 214 bits (546), Expect = 9e-57
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60
MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL
Sbjct: 1 MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60
Query: 61 VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105
VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN
Sbjct: 61 VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105
>gi|239750436 PREDICTED: similar to microtubule-associated protein 1
light chain 3 beta [Homo sapiens]
Length = 105
Score = 214 bits (546), Expect = 9e-57
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60
MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL
Sbjct: 1 MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60
Query: 61 VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105
VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN
Sbjct: 61 VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105
>gi|239744738 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 105
Score = 214 bits (546), Expect = 9e-57
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60
MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL
Sbjct: 1 MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60
Query: 61 VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105
VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN
Sbjct: 61 VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105
>gi|12383056 microtubule-associated proteins 1A/1B light chain 3
[Homo sapiens]
Length = 125
Score = 154 bits (388), Expect = 2e-38
Identities = 86/125 (68%), Positives = 91/125 (72%), Gaps = 22/125 (17%)
Query: 1 MLSEKTFKQCCTFK----------------------RYQGEKELPVLDKTKFLVPDHVNM 38
M SEKTFKQ TF+ RY+GEK+LPVLDKTKFLVPDHVNM
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 39 SELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFG 98
SEL KII+R L+LNANQAFFLLVNG S VSVSTP SEVYE EKDEDGFLY VYASQE FG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
Query: 99 RKLSV 103
KLSV
Sbjct: 121 MKLSV 125
>gi|148277548 microtubule-associated protein 1 light chain 3 beta 2
[Homo sapiens]
Length = 125
Score = 150 bits (379), Expect = 2e-37
Identities = 85/125 (68%), Positives = 90/125 (72%), Gaps = 22/125 (17%)
Query: 1 MLSEKTFKQCCTFK----------------------RYQGEKELPVLDKTKFLVPDHVNM 38
M SEKTFKQ TF+ RY+GEK+LPVLDKTKFLVPDHVNM
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 39 SELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFG 98
SEL KII+R L+LNANQAFFLLVNG S VSVSTP SEVYE EKDEDGFLY V ASQE FG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
Query: 99 RKLSV 103
KLSV
Sbjct: 121 MKLSV 125
>gi|169183885 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 157
Score = 141 bits (355), Expect = 1e-34
Identities = 81/124 (65%), Positives = 88/124 (70%), Gaps = 23/124 (18%)
Query: 3 SEKTFKQCCTFK---------------------RYQGEKELPVLDKTKFLVPD--HVNMS 39
+EKTFKQ TF+ RYQGEK+LPVLDKTKFLVPD VNMS
Sbjct: 34 AEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMS 93
Query: 40 ELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGR 99
EL KII+R L+LNANQAF L+VNG S VSVSTP SEVYE EKDEDGFLY VYASQE +G
Sbjct: 94 ELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYGM 153
Query: 100 KLSV 103
KLSV
Sbjct: 154 KLSV 157
>gi|169179756 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 377
Score = 141 bits (355), Expect = 1e-34
Identities = 81/124 (65%), Positives = 88/124 (70%), Gaps = 23/124 (18%)
Query: 3 SEKTFKQCCTFK---------------------RYQGEKELPVLDKTKFLVPD--HVNMS 39
+EKTFKQ TF+ RYQGEK+LPVLDKTKFLVPD VNMS
Sbjct: 254 AEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMS 313
Query: 40 ELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGR 99
EL KII+R L+LNANQAF L+VNG S VSVSTP SEVYE EKDEDGFLY VYASQE +G
Sbjct: 314 ELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYGM 373
Query: 100 KLSV 103
KLSV
Sbjct: 374 KLSV 377
>gi|169180155 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 377
Score = 141 bits (355), Expect = 1e-34
Identities = 81/124 (65%), Positives = 88/124 (70%), Gaps = 23/124 (18%)
Query: 3 SEKTFKQCCTFK---------------------RYQGEKELPVLDKTKFLVPD--HVNMS 39
+EKTFKQ TF+ RYQGEK+LPVLDKTKFLVPD VNMS
Sbjct: 254 AEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMS 313
Query: 40 ELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGR 99
EL KII+R L+LNANQAF L+VNG S VSVSTP SEVYE EKDEDGFLY VYASQE +G
Sbjct: 314 ELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYGM 373
Query: 100 KLSV 103
KLSV
Sbjct: 374 KLSV 377
>gi|31563518 microtubule-associated protein 1 light chain 3 alpha
isoform b [Homo sapiens]
Length = 125
Score = 134 bits (336), Expect = 2e-32
Identities = 66/85 (77%), Positives = 74/85 (87%)
Query: 14 KRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT 73
+RY+GEK+LPVLDKTKFLVPDHVNMSEL KII+R L+LN QAFFLLVN S VSVSTP
Sbjct: 40 ERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPI 99
Query: 74 SEVYEGEKDEDGFLYTVYASQEMFG 98
+++YE EKDEDGFLY VYASQE FG
Sbjct: 100 ADIYEQEKDEDGFLYMVYASQETFG 124
>gi|14210522 microtubule-associated protein 1 light chain 3 alpha
isoform a [Homo sapiens]
Length = 121
Score = 134 bits (336), Expect = 2e-32
Identities = 66/85 (77%), Positives = 74/85 (87%)
Query: 14 KRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT 73
+RY+GEK+LPVLDKTKFLVPDHVNMSEL KII+R L+LN QAFFLLVN S VSVSTP
Sbjct: 36 ERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPI 95
Query: 74 SEVYEGEKDEDGFLYTVYASQEMFG 98
+++YE EKDEDGFLY VYASQE FG
Sbjct: 96 ADIYEQEKDEDGFLYMVYASQETFG 120
>gi|51972260 microtubule-associated protein 1 light chain 3 gamma
[Homo sapiens]
Length = 147
Score = 90.5 bits (223), Expect = 3e-19
Identities = 45/85 (52%), Positives = 57/85 (67%)
Query: 14 KRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT 73
+RY E LP LDKTKFLVP + M++ II+ + L A +AF+LLVN S VS+S
Sbjct: 42 ERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATM 101
Query: 74 SEVYEGEKDEDGFLYTVYASQEMFG 98
+E+Y KDEDGF+Y YASQE FG
Sbjct: 102 AEIYRDYKDEDGFVYMTYASQETFG 126
>gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo
sapiens]
Length = 117
Score = 60.1 bits (144), Expect = 4e-10
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 25 LDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT-SEVYEGEKDE 83
+DK K+LVP + +++ II++ ++L + +A FL V+ TV S+ T ++YE EKDE
Sbjct: 44 IDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVD--KTVPQSSLTMGQLYEKEKDE 101
Query: 84 DGFLYTVYASQEMFG 98
DGFLY Y+ + FG
Sbjct: 102 DGFLYVAYSGENTFG 116
>gi|13899219 GABA(A) receptor-associated protein like 1 [Homo
sapiens]
Length = 117
Score = 51.2 bits (121), Expect = 2e-07
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 22 LPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEK 81
+P LDK K+LVP + + + +I++ + L A F VN + S ++YE
Sbjct: 41 VPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNH 99
Query: 82 DEDGFLYTVYASQEMFGR 99
+ED FLY Y+ + ++G+
Sbjct: 100 EEDYFLYVAYSDESVYGK 117
>gi|6005764 GABA(A) receptor-associated protein [Homo sapiens]
Length = 117
Score = 48.5 bits (114), Expect = 1e-06
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 25 LDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTS----EVYEGE 80
LDK K+LVP + + + +I++ + L A A F VN +V PTS ++Y+
Sbjct: 44 LDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVN-----NVIPPTSATMGQLYQEH 98
Query: 81 KDEDGFLYTVYASQEMFG 98
+ED FLY Y+ + ++G
Sbjct: 99 HEEDFFLYIAYSDESVYG 116
>gi|153791466 AMIGO protein [Homo sapiens]
Length = 493
Score = 32.7 bits (73), Expect = 0.063
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 66 TVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSV 103
TVSVS S +++ + EDG +YT YA E F LSV
Sbjct: 317 TVSVSKDGSLLFQQVQVEDGGVYTCYAMGETFNETLSV 354
>gi|4507537 nuclear receptor subfamily 2, group E, member 1 [Homo
sapiens]
Length = 385
Score = 29.3 bits (64), Expect = 0.69
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 45 IKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDG 85
+K+CL +N N+ GP T ++ + + G K+E+G
Sbjct: 75 LKKCLEVNMNKDAVQHERGPRTSTIRKQVALYFRGHKEENG 115
>gi|38261969 APG12 autophagy 12-like [Homo sapiens]
Length = 187
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 21 ELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGE 80
+ P++ K+ V + L IK+ L+L A++ F+ VN S +YE
Sbjct: 111 DTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYEC- 169
Query: 81 KDEDGFLYTVYASQEMFG 98
DG L Y + +G
Sbjct: 170 FGSDGKLVLHYCKSQAWG 187
>gi|207028821 RNA binding motif protein 44 [Homo sapiens]
Length = 1052
Score = 27.3 bits (59), Expect = 2.6
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 3 SEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVN 62
S++ K+ C K+ + K LP +F+ P+ +N+ TKIIKR L+ + ++N
Sbjct: 961 SDQGVKKNC--KQIESAKLLPDTP-VQFIPPNTLNLRSFTKIIKRLAELHPEVSRDHIIN 1017
Query: 63 GPSTVSV 69
V +
Sbjct: 1018 ALQEVRI 1024
>gi|50582996 multiple C2 domains, transmembrane 1 isoform S [Homo
sapiens]
Length = 778
Score = 27.3 bits (59), Expect = 2.6
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 57 FFLLVNGPSTVSVSTPTSEVYEGEKDED----------GFLYTVYASQEM 96
+FL+++G T ++ E E++ED GF+ +YA QE+
Sbjct: 617 YFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEV 666
>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
sapiens]
Length = 999
Score = 27.3 bits (59), Expect = 2.6
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 57 FFLLVNGPSTVSVSTPTSEVYEGEKDED----------GFLYTVYASQEM 96
+FL+++G T ++ E E++ED GF+ +YA QE+
Sbjct: 838 YFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEV 887
>gi|157694524 plexin D1 [Homo sapiens]
Length = 1925
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 47 RCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQ 94
R L++N N++ ++ TV+ P V + + + G+LY + + Q
Sbjct: 493 RLLKINLNESMQVVSRRVVTVAYGEPVHHVMQFDPADSGYLYLMTSHQ 540
>gi|94536836 2-oxoglutarate and iron-dependent oxygenase domain
containing 1 [Homo sapiens]
Length = 542
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 39 SELTKIIKRCLRLNANQAFFLLVN 62
S+L +I+K C++L ++A FLL++
Sbjct: 335 SKLPEILKECMKLFRSEALFLLLS 358
>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
Length = 4544
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 60 LVNGPSTVSVSTPTSEVYEGEKDED 84
+ NG V + PT ++YEG + +D
Sbjct: 4459 MTNGAMNVEIGNPTYKMYEGGEPDD 4483
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,741,860
Number of Sequences: 37866
Number of extensions: 130449
Number of successful extensions: 338
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 23
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.