Guide to the Human Genome
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Name: LOC652191 Sequence: fasta or formatted (105aa) NCBI GI: 239744738
Description:

PREDICTED: similar to microtubule-associated proteins 1A/1B light chain 3

Referenced in:

Tubulins and Microtubules

Other entries for this name:
alt mRNA [105aa] PREDICTED: similar to microtubule-associated protein 1 light chai...
alt mRNA [105aa] PREDICTED: similar to microtubule-associated protein 1 light chai...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.9          3           1
 C cysteine            2.9          3           2
 D aspartate           3.8          4           1
 E glutamate           8.6          9           1
 F phenylalanine       6.7          7           2
 G glycine             4.8          5           1
 H histidine           1.0          1           1
 I isoleucine          1.9          2           2
 K lysine              9.5         10           1
 L leucine            10.5         11           2
 M methionine          2.9          3           1
 N asparagine          4.8          5           1
 P proline             3.8          4           1
 Q glutamine           3.8          4           1
 R arginine            3.8          4           1
 S serine              7.6          8           1
 T threonine           7.6          8           1
 V valine              8.6          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            4.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to microtubule-associated protei... 
LOC652191             1.000   PREDICTED: similar to microtubule-associated protei...
LOC652191             1.000   PREDICTED: similar to microtubule-associated protei...
MAP1LC3B              0.683   microtubule-associated proteins 1A/1B light chain 3 ...
MAP1LC3B2             0.661   microtubule-associated protein 1 light chain 3 beta...
LOC392288             0.614   PREDICTED: similar to microtubule-associated protei...
LOC392288             0.614   PREDICTED: similar to microtubule-associated protei...
LOC392288             0.614   PREDICTED: similar to microtubule-associated protei...
MAP1LC3A              0.577   microtubule-associated protein 1 light chain 3 alpha...
MAP1LC3A              0.577   microtubule-associated protein 1 light chain 3 alpha...
MAP1LC3C              0.349   microtubule-associated protein 1 light chain 3 gamma...
GABARAPL2             0.185   GABA(A) receptor-associated protein-like 2 
GABARAPL1             0.138   GABA(A) receptor-associated protein like 1 
GABARAP               0.127   GABA(A) receptor-associated protein 
AMIGO1                0.042   AMIGO protein 
NR2E1                 0.021   nuclear receptor subfamily 2, group E, member 1 [Homo...
ATG12                 0.016   APG12 autophagy 12-like 
RBM44                 0.011   RNA binding motif protein 44 
MCTP1                 0.011   multiple C2 domains, transmembrane 1 isoform S [Homo...
MCTP1                 0.011   multiple C2 domains, transmembrane 1 isoform L [Hom...
PLXND1                0.011   plexin D1 
OGFOD1                0.005   2-oxoglutarate and iron-dependent oxygenase domain c...
LRP1                  0.005   low density lipoprotein-related protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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