Guide to the Human Genome
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Name: OGFOD1 Sequence: fasta or formatted (542aa) NCBI GI: 94536836
Description:

2-oxoglutarate and iron-dependent oxygenase domain containing 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5         19           1
 C cysteine            1.5          8           1
 D aspartate           5.7         31           2
 E glutamate          12.2         66           2
 F phenylalanine       5.9         32           2
 G glycine             4.1         22           2
 H histidine           3.7         20           1
 I isoleucine          5.2         28           1
 K lysine              7.4         40           2
 L leucine             9.4         51           3
 M methionine          2.2         12           1
 N asparagine          3.7         20           2
 P proline             6.5         35           2
 Q glutamine           3.5         19           2
 R arginine            4.1         22           2
 S serine              8.3         45           2
 T threonine           4.4         24           2
 V valine              3.9         21           1
 W tryptophan          1.8         10           1
 Y tyrosine            3.1         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   2-oxoglutarate and iron-dependent oxygenase domain c... 
FAM13B                0.010   hypothetical protein LOC51306 isoform 2 
FAM13B                0.010   hypothetical protein LOC51306 isoform 1 
CCDC136               0.010   coiled-coil domain containing 136 
IPO7                  0.010   importin 7 
TAOK2                 0.009   TAO kinase 2 isoform 1 
TAOK2                 0.009   TAO kinase 2 isoform 2 
UBTF                  0.009   upstream binding transcription factor, RNA polymera...
UBTF                  0.009   upstream binding transcription factor, RNA polymera...
UBTF                  0.009   upstream binding transcription factor, RNA polymerase...
NEDD4L                0.008   neural precursor cell expressed, developmentally dow...
NEDD4L                0.008   neural precursor cell expressed, developmentally do...
NEDD4L                0.008   neural precursor cell expressed, developmentally do...
NEDD4L                0.008   neural precursor cell expressed, developmentally do...
FAM13B                0.008   hypothetical protein LOC51306 isoform 3 
TTC18                 0.007   tetratricopeptide repeat domain 18 
CDC2L2                0.007   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.007   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.007   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.007   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.007   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.007   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.007   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.007   cell division cycle 2-like 1 (PITSLRE proteins) isof...
TSPYL2                0.007   TSPY-like 2 
GTF2F1                0.007   general transcription factor IIF, polypeptide 1, 74...
AGBL2                 0.007   carboxypeptidase 2, cytosolic 
CHGA                  0.006   chromogranin A precursor 
SYNE2                 0.006   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.006   spectrin repeat containing, nuclear envelope 2 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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