Search of human proteins with 239750235

Search of human proteins with 239750235

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]
         (257 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]           519   e-147
gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo ...   519   e-147
gi|239755717 PREDICTED: hypothetical protein [Homo sapiens]           344   5e-95
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         47   2e-05
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]         47   2e-05
gi|148613878 acrosin precursor [Homo sapiens]                          47   2e-05
gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens]           46   3e-05
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas...    46   4e-05
gi|55953110 retinoblastoma protein-binding zinc finger protein i...    44   1e-04
gi|20336260 retinoblastoma protein-binding zinc finger protein i...    44   1e-04
gi|20336258 retinoblastoma protein-binding zinc finger protein i...    44   1e-04
gi|55750053 atrophin-1 [Homo sapiens]                                  44   2e-04
gi|55750041 atrophin-1 [Homo sapiens]                                  44   2e-04
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]    44   2e-04
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]    44   2e-04
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo...    43   2e-04
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo...    43   2e-04
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [...    42   7e-04
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               42   7e-04
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                41   9e-04
gi|239756825 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|239751326 PREDICTED: hypothetical protein XP_002347792 [Homo ...    41   0.001
gi|239745825 PREDICTED: hypothetical protein XP_002343558 [Homo ...    41   0.001
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        41   0.001
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H...    40   0.002
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho...    40   0.002
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom...    40   0.002
gi|150170670 piccolo isoform 2 [Homo sapiens]                          40   0.002
gi|150378539 piccolo isoform 1 [Homo sapiens]                          40   0.002
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]       40   0.002

>gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score =  519 bits (1336), Expect = e-147
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60
           MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR
Sbjct: 1   MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60

Query: 61  EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120
           EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL
Sbjct: 61  EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120

Query: 121 LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS 180
           LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS
Sbjct: 121 LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS 180

Query: 181 SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS 240
           SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS
Sbjct: 181 SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS 240

Query: 241 SSSSSFPALPLLPHTLK 257
           SSSSSFPALPLLPHTLK
Sbjct: 241 SSSSSFPALPLLPHTLK 257


>gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo
           sapiens]
          Length = 257

 Score =  519 bits (1336), Expect = e-147
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60
           MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR
Sbjct: 1   MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60

Query: 61  EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120
           EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL
Sbjct: 61  EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120

Query: 121 LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS 180
           LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS
Sbjct: 121 LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS 180

Query: 181 SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS 240
           SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS
Sbjct: 181 SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS 240

Query: 241 SSSSSFPALPLLPHTLK 257
           SSSSSFPALPLLPHTLK
Sbjct: 241 SSSSSFPALPLLPHTLK 257


>gi|239755717 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 187

 Score =  344 bits (882), Expect = 5e-95
 Identities = 185/257 (71%), Positives = 185/257 (71%), Gaps = 70/257 (27%)

Query: 1   MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60
           MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR
Sbjct: 1   MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60

Query: 61  EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120
           EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLL   
Sbjct: 61  EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLL--- 117

Query: 121 LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS 180
                        LLLL P                 FLLL L                  
Sbjct: 118 -------------LLLLTP-----------------FLLLXL------------------ 129

Query: 181 SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS 240
                              PPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS
Sbjct: 130 -------------------PPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS 170

Query: 241 SSSSSFPALPLLPHTLK 257
           SSSSSFPALPLLPHTLK
Sbjct: 171 SSSSSFPALPLLPHTLK 187


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 23/33 (69%), Positives = 25/33 (75%), Gaps = 4/33 (12%)

Query: 174 PSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPP 206
           P  +PSS+SS    SPS SPSSSSP PPPPPPP
Sbjct: 186 PPPAPSSASS----SPSPSPSSSSPSPPPPPPP 214



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 174 PSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPP 205
           P+  P+ SS+ S  SPS S SS SP PPPPPP
Sbjct: 184 PAPPPAPSSASSSPSPSPSSSSPSPPPPPPPP 215



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 19/34 (55%), Positives = 20/34 (58%)

Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSF 208
           S+S S S SPS SSPS  P    P PP PP P F
Sbjct: 192 SASSSPSPSPSSSSPSPPPPPPPPAPPAPPAPRF 225



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 176 SSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPS 207
           SS SSS SPS SS S SP    P P PP PP+
Sbjct: 191 SSASSSPSPSPSSSSPSPPPPPPPPAPPAPPA 222



 Score = 34.3 bits (77), Expect = 0.11
 Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 174 PSSSPSSSSSPSYSSPSSSPSSSSPLPP-PPPPP 206
           P +  S+SSSPS S  SSSPS   P PP  PP P
Sbjct: 187 PPAPSSASSSPSPSPSSSSPSPPPPPPPPAPPAP 220



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 21/63 (33%), Positives = 29/63 (46%)

Query: 155 PLFLLLPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSS 214
           P+ L +P  LP         + SP S+SS    +   +  +    P PPP PS +SSS S
Sbjct: 139 PIPLPVPSLLPRLRAWRTGKTVSPQSNSSRPTCARHLTLGTGDGGPAPPPAPSSASSSPS 198

Query: 215 SFP 217
             P
Sbjct: 199 PSP 201



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 6/39 (15%)

Query: 177 SPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
           S   +  P  S+PSS P      PP PP  S S SSSSS
Sbjct: 791 SSKKARPPKESAPSSGP------PPKPPVSSGSGSSSSS 823



 Score = 28.5 bits (62), Expect = 6.0
 Identities = 17/35 (48%), Positives = 19/35 (54%)

Query: 181 SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
           SS  +     S+PSS  P  PP    S SSSSSSS
Sbjct: 791 SSKKARPPKESAPSSGPPPKPPVSSGSGSSSSSSS 825


>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
          Length = 2968

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 38/72 (52%), Positives = 40/72 (55%), Gaps = 15/72 (20%)

Query: 174  PSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSF 233
            P+SS SSSSS S SS SSS SSSS         S SSSSSSS               SS 
Sbjct: 2612 PASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------SSS 2656

Query: 234  SSSTFSSSSSSS 245
            SSS+ SSSSSSS
Sbjct: 2657 SSSSSSSSSSSS 2668



 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 36/71 (50%), Positives = 40/71 (56%), Gaps = 15/71 (21%)

Query: 175  SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234
            ++SP+SSSS S SS SSS SSSS         S SSSSSSS               SS S
Sbjct: 2609 AASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------SSSS 2653

Query: 235  SSTFSSSSSSS 245
            SS+ SSSSSSS
Sbjct: 2654 SSSSSSSSSSS 2664



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 15/71 (21%)

Query: 175  SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234
            S++ S ++SP+ SS SSS SSSS         S SSSSSSS               SS S
Sbjct: 2603 SAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------SSSS 2647

Query: 235  SSTFSSSSSSS 245
            SS+ SSSSSSS
Sbjct: 2648 SSSSSSSSSSS 2658



 Score = 37.7 bits (86), Expect = 0.010
 Identities = 26/41 (63%), Positives = 26/41 (63%)

Query: 175  SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
            SSS SSSSS S SS SSS SSSS         S SSSSSSS
Sbjct: 2629 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2669



 Score = 37.7 bits (86), Expect = 0.010
 Identities = 26/41 (63%), Positives = 26/41 (63%)

Query: 175  SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
            SSS SSSSS S SS SSS SSSS         S SSSSSSS
Sbjct: 2630 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670



 Score = 37.7 bits (86), Expect = 0.010
 Identities = 26/41 (63%), Positives = 26/41 (63%)

Query: 175  SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
            SSS SSSSS S SS SSS SSSS         S SSSSSSS
Sbjct: 2631 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2671



 Score = 36.6 bits (83), Expect = 0.022
 Identities = 25/41 (60%), Positives = 26/41 (63%)

Query: 175  SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
            SSS SSSSS S SS SSS SSSS         S SSSSSS+
Sbjct: 2632 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 2672



 Score = 36.2 bits (82), Expect = 0.029
 Identities = 35/71 (49%), Positives = 35/71 (49%), Gaps = 23/71 (32%)

Query: 175  SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234
            SSS SSSSS S SS SSS SSSS         S SSSSSSS               SS S
Sbjct: 2633 SSSSSSSSSSSSSSSSSSSSSSS--------SSSSSSSSSS---------------SSSS 2669

Query: 235  SSTFSSSSSSS 245
            SST    SS S
Sbjct: 2670 SSTTDEDSSCS 2680



 Score = 32.0 bits (71), Expect = 0.54
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 9/48 (18%)

Query: 169  PLFLLPSSSPSSSSSP------SYSSPSSSPSSSSPLPPPPPPPSFSS 210
            PL L PSS+P S  SP         +P + P   +P  P P PP+F+S
Sbjct: 2361 PLALEPSSTPGSKKSPPEPVDKRAKAPKARP---APPQPSPAPPAFTS 2405



 Score = 32.0 bits (71), Expect = 0.54
 Identities = 22/43 (51%), Positives = 23/43 (53%)

Query: 175  SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
            SSS SSSSS S SS SSS SSSS         S  SS   + P
Sbjct: 2645 SSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAP 2687



 Score = 30.8 bits (68), Expect = 1.2
 Identities = 37/97 (38%), Positives = 38/97 (39%), Gaps = 41/97 (42%)

Query: 175  SSSPSSSSSPSYSSPSSSPSS--------------------------SSPLPPPPPPPSF 208
            SSS SSS S S SS SSS  S                          SS    P    S 
Sbjct: 2559 SSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSS 2618

Query: 209  SSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSSSSSSS 245
            SSSSSSS               SS SSS+ SSSSSSS
Sbjct: 2619 SSSSSSS---------------SSSSSSSSSSSSSSS 2640



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 175  SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
            SSS SSSSS S SS +   SS S      P P+   S+ ++ P
Sbjct: 2658 SSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALP 2700



 Score = 28.5 bits (62), Expect = 6.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 181  SSSPSYS---SPSSSPSSSSPLPPPPPP 205
            S  P+Y+   +PSS P+S  P  PPP P
Sbjct: 1016 SKPPAYAYPATPSSHPTSPPPASPPPTP 1043


>gi|148613878 acrosin precursor [Homo sapiens]
          Length = 421

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 24/71 (33%), Positives = 33/71 (46%)

Query: 173 LPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSS 232
           LP   P++   P  S P   P  +SPLPPPPPPP  + SS++  P  L        L+  
Sbjct: 335 LPPRPPAAQPRPPPSPPPPPPPPASPLPPPPPPPPPTPSSTTKLPQGLSFAKRLQQLIEV 394

Query: 233 FSSSTFSSSSS 243
               T+S   +
Sbjct: 395 LKGKTYSDGKN 405


>gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens]
          Length = 666

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 9/68 (13%)

Query: 178 PSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSST 237
           P   S P    P   P+ + PLPPPPPPP          P L LLPL  LLLL +   + 
Sbjct: 2   PPGGSGPG-GCPRRPPALAGPLPPPPPPP--------PPPLLPLLPLLLLLLLGAAEGAR 52

Query: 238 FSSSSSSS 245
            SSS S++
Sbjct: 53  VSSSLSTT 60


>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
           [Homo sapiens]
          Length = 355

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 24/71 (33%), Positives = 32/71 (45%)

Query: 173 LPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSS 232
           LP   P++   P  S P   P   SPLPPPPPPP  + SS++  P  L        L+  
Sbjct: 269 LPPRPPAAQPRPPPSPPPPPPPPPSPLPPPPPPPPPTPSSTTKLPQGLSFAKRLQQLIEV 328

Query: 233 FSSSTFSSSSS 243
               T+S   +
Sbjct: 329 LKGKTYSDGKN 339


>gi|55953110 retinoblastoma protein-binding zinc finger protein
           isoform c [Homo sapiens]
          Length = 1481

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 28/90 (31%)

Query: 174 PSSSPSSSSSPSYSSPSSSPS---SSSPLPP--------PPPPPSFSSSSSSSFPFLLLL 222
           P  SP S+++     P  SP+   S SP+PP         P PP+ SSSSS         
Sbjct: 805 PCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSS--------- 855

Query: 223 PLFFLLLLSSFSSSTFSSSSSSSFPALPLL 252
                   SS SSS+FSSSSSSS P+ P L
Sbjct: 856 --------SSSSSSSFSSSSSSSSPSPPPL 877



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 152 LLLPLFLLLPLFLPLFIPLFLLPSSSP---SSSSSPSYSSPSSSPSSSSPLPPPPPPPSF 208
           +L P     P  +P   PL    S  P   SSSSS S SS S S SSSS  P PPP  + 
Sbjct: 821 ILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAI 880

Query: 209 SSSSSSSFPFLLLLPL 224
           SS  SS       LP+
Sbjct: 881 SSVVSSGDNLEASLPM 896



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 21/100 (21%)

Query: 165 PLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLP-----------PPPPPPSFSSSSS 213
           P  +P   LP+ S S+S  P   SP S+ ++ SPLP           P PP     S++S
Sbjct: 786 PPLLPTVPLPAPSSSASPHPC-PSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAAS 844

Query: 214 SSFPFLLLLPLFFLLLLSSFSSSTFSSSSSSSFPALPLLP 253
              P          L  SS SSS+ SS SSSS  + P  P
Sbjct: 845 PGPP---------TLSSSSSSSSSSSSFSSSSSSSSPSPP 875



 Score = 31.6 bits (70), Expect = 0.71
 Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 155 PLFLLLPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSS 214
           PL +L P   P   P+  +     ++S  P   S SSS SSSS         SFSSSSSS
Sbjct: 818 PLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSS--------SSFSSSSSS 869

Query: 215 SFP 217
           S P
Sbjct: 870 SSP 872


>gi|20336260 retinoblastoma protein-binding zinc finger protein
            isoform b [Homo sapiens]
          Length = 1682

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 28/90 (31%)

Query: 174  PSSSPSSSSSPSYSSPSSSPS---SSSPLPP--------PPPPPSFSSSSSSSFPFLLLL 222
            P  SP S+++     P  SP+   S SP+PP         P PP+ SSSSS         
Sbjct: 1006 PCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSS--------- 1056

Query: 223  PLFFLLLLSSFSSSTFSSSSSSSFPALPLL 252
                    SS SSS+FSSSSSSS P+ P L
Sbjct: 1057 --------SSSSSSSFSSSSSSSSPSPPPL 1078



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 152  LLLPLFLLLPLFLPLFIPLFLLPSSSP---SSSSSPSYSSPSSSPSSSSPLPPPPPPPSF 208
            +L P     P  +P   PL    S  P   SSSSS S SS S S SSSS  P PPP  + 
Sbjct: 1022 ILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAI 1081

Query: 209  SSSSSSSFPFLLLLPL 224
            SS  SS       LP+
Sbjct: 1082 SSVVSSGDNLEASLPM 1097



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 21/100 (21%)

Query: 165  PLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLP-----------PPPPPPSFSSSSS 213
            P  +P   LP+ S S+S  P   SP S+ ++ SPLP           P PP     S++S
Sbjct: 987  PPLLPTVPLPAPSSSASPHPC-PSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAAS 1045

Query: 214  SSFPFLLLLPLFFLLLLSSFSSSTFSSSSSSSFPALPLLP 253
               P          L  SS SSS+ SS SSSS  + P  P
Sbjct: 1046 PGPP---------TLSSSSSSSSSSSSFSSSSSSSSPSPP 1076



 Score = 31.6 bits (70), Expect = 0.71
 Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 155  PLFLLLPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSS 214
            PL +L P   P   P+  +     ++S  P   S SSS SSSS         SFSSSSSS
Sbjct: 1019 PLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSS--------SSFSSSSSS 1070

Query: 215  SFP 217
            S P
Sbjct: 1071 SSP 1073


>gi|20336258 retinoblastoma protein-binding zinc finger protein
            isoform a [Homo sapiens]
          Length = 1718

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 28/90 (31%)

Query: 174  PSSSPSSSSSPSYSSPSSSPS---SSSPLPP--------PPPPPSFSSSSSSSFPFLLLL 222
            P  SP S+++     P  SP+   S SP+PP         P PP+ SSSSS         
Sbjct: 1006 PCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSS--------- 1056

Query: 223  PLFFLLLLSSFSSSTFSSSSSSSFPALPLL 252
                    SS SSS+FSSSSSSS P+ P L
Sbjct: 1057 --------SSSSSSSFSSSSSSSSPSPPPL 1078



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 152  LLLPLFLLLPLFLPLFIPLFLLPSSSP---SSSSSPSYSSPSSSPSSSSPLPPPPPPPSF 208
            +L P     P  +P   PL    S  P   SSSSS S SS S S SSSS  P PPP  + 
Sbjct: 1022 ILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAI 1081

Query: 209  SSSSSSSFPFLLLLPL 224
            SS  SS       LP+
Sbjct: 1082 SSVVSSGDNLEASLPM 1097



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 21/100 (21%)

Query: 165  PLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLP-----------PPPPPPSFSSSSS 213
            P  +P   LP+ S S+S  P   SP S+ ++ SPLP           P PP     S++S
Sbjct: 987  PPLLPTVPLPAPSSSASPHPC-PSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAAS 1045

Query: 214  SSFPFLLLLPLFFLLLLSSFSSSTFSSSSSSSFPALPLLP 253
               P          L  SS SSS+ SS SSSS  + P  P
Sbjct: 1046 PGPP---------TLSSSSSSSSSSSSFSSSSSSSSPSPP 1076



 Score = 31.6 bits (70), Expect = 0.71
 Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 155  PLFLLLPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSS 214
            PL +L P   P   P+  +     ++S  P   S SSS SSSS         SFSSSSSS
Sbjct: 1019 PLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSS--------SSFSSSSSS 1070

Query: 215  SFP 217
            S P
Sbjct: 1071 SSP 1073


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 18/82 (21%)

Query: 178 PSSSSSPSYS-SPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSS 236
           P     P+ + SP S P +SS  P PP    +SSSSSSS               ++ SSS
Sbjct: 344 PGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSS--------------AAASSSS 389

Query: 237 TFSSSSSSSFP---ALPLLPHT 255
           + SSSS+S FP   ALP  PH+
Sbjct: 390 SSSSSSASPFPASQALPSYPHS 411



 Score = 36.6 bits (83), Expect = 0.022
 Identities = 21/43 (48%), Positives = 25/43 (58%)

Query: 169 PLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSS 211
           P    P SS SSSS+ + SS SSS SS+SP P     PS+  S
Sbjct: 369 PPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHS 411



 Score = 32.3 bits (72), Expect = 0.42
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 165 PLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPP-----PPPPSFSSSS 212
           P+  P     SSS ++SSS S SS S+SP  +S   P      PPP S S S+
Sbjct: 370 PMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSN 422



 Score = 32.0 bits (71), Expect = 0.54
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 164 LPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPP 206
           LP +   F  P+S   S+  P Y+ PS    +     PPPPPP
Sbjct: 405 LPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPP 447



 Score = 31.2 bits (69), Expect = 0.93
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 175 SSSPSSSSSPSYSSPSSSPSSS-----SPLPPPPPPPSFSSSSSSS 215
           SSS SSSS+   S P S PS S     +P P PP P   +SS++ S
Sbjct: 570 SSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLS 615



 Score = 30.8 bits (68), Expect = 1.2
 Identities = 20/44 (45%), Positives = 22/44 (50%)

Query: 174 PSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
           P   P SSSS S ++ SSS SSSS    P P      S   SFP
Sbjct: 370 PMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFP 413



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 12/82 (14%)

Query: 175 SSSPSSSSSPS------YSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLL 228
           S  P+SSS+P+      YSS SSS +++S         S SSSS+S FP    LP +   
Sbjct: 358 SLPPASSSAPAPPMRFPYSSSSSSSAAASS------SSSSSSSSASPFPASQALPSYPHS 411

Query: 229 LLSSFSSSTFSSSSSSSFPALP 250
                S S  +     + P+LP
Sbjct: 412 FPPPTSLSVSNQPPKYTQPSLP 433



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 13/65 (20%)

Query: 183 SPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSSSS 242
           SPS  S    P   + LPPP    S+S +  +  P              S SS++ SS+S
Sbjct: 533 SPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPV-------------SSSSNSSSSTS 579

Query: 243 SSSFP 247
             S+P
Sbjct: 580 QGSYP 584


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 18/82 (21%)

Query: 178 PSSSSSPSYS-SPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSS 236
           P     P+ + SP S P +SS  P PP    +SSSSSSS               ++ SSS
Sbjct: 344 PGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSS--------------AAASSSS 389

Query: 237 TFSSSSSSSFP---ALPLLPHT 255
           + SSSS+S FP   ALP  PH+
Sbjct: 390 SSSSSSASPFPASQALPSYPHS 411



 Score = 36.6 bits (83), Expect = 0.022
 Identities = 21/43 (48%), Positives = 25/43 (58%)

Query: 169 PLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSS 211
           P    P SS SSSS+ + SS SSS SS+SP P     PS+  S
Sbjct: 369 PPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHS 411



 Score = 32.3 bits (72), Expect = 0.42
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 165 PLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPP-----PPPPSFSSSS 212
           P+  P     SSS ++SSS S SS S+SP  +S   P      PPP S S S+
Sbjct: 370 PMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSN 422



 Score = 32.0 bits (71), Expect = 0.54
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 164 LPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPP 206
           LP +   F  P+S   S+  P Y+ PS    +     PPPPPP
Sbjct: 405 LPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPP 447



 Score = 31.2 bits (69), Expect = 0.93
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 175 SSSPSSSSSPSYSSPSSSPSSS-----SPLPPPPPPPSFSSSSSSS 215
           SSS SSSS+   S P S PS S     +P P PP P   +SS++ S
Sbjct: 570 SSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLS 615



 Score = 30.8 bits (68), Expect = 1.2
 Identities = 20/44 (45%), Positives = 22/44 (50%)

Query: 174 PSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
           P   P SSSS S ++ SSS SSSS    P P      S   SFP
Sbjct: 370 PMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFP 413



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 12/82 (14%)

Query: 175 SSSPSSSSSPS------YSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLL 228
           S  P+SSS+P+      YSS SSS +++S         S SSSS+S FP    LP +   
Sbjct: 358 SLPPASSSAPAPPMRFPYSSSSSSSAAASS------SSSSSSSSASPFPASQALPSYPHS 411

Query: 229 LLSSFSSSTFSSSSSSSFPALP 250
                S S  +     + P+LP
Sbjct: 412 FPPPTSLSVSNQPPKYTQPSLP 433



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 13/65 (20%)

Query: 183 SPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSSSS 242
           SPS  S    P   + LPPP    S+S +  +  P              S SS++ SS+S
Sbjct: 533 SPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPV-------------SSSSNSSSSTS 579

Query: 243 SSSFP 247
             S+P
Sbjct: 580 QGSYP 584


>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
          Length = 1013

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 29/49 (59%), Positives = 31/49 (63%), Gaps = 6/49 (12%)

Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLP 223
           SSS SSSSS S SS SSS SSSS  PPP  PP      +SS P +L LP
Sbjct: 87  SSSSSSSSSSSSSSASSSSSSSSSSPPPASPP------ASSPPRVLELP 129



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 23/36 (63%), Positives = 24/36 (66%)

Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSS 210
           SSS SSSSS S SS +SS SSSS   PPP  P  SS
Sbjct: 86  SSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASS 121



 Score = 32.3 bits (72), Expect = 0.42
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 12/79 (15%)

Query: 172 LLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLS 231
           +L +SSP    +   S+P   P ++    P P   + +SSSSSS               S
Sbjct: 47  VLAASSPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSS------------SS 94

Query: 232 SFSSSTFSSSSSSSFPALP 250
           S SSS+ SSSSSSS  + P
Sbjct: 95  SSSSSSASSSSSSSSSSPP 113



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 27/78 (34%)

Query: 173 LPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSS 232
           LP ++  ++ +P+ ++ +SS SSSS           SSSSSS                SS
Sbjct: 67  LPPATGGAAPNPATTTAASSSSSSS-----------SSSSSS----------------SS 99

Query: 233 FSSSTFSSSSSSSFPALP 250
            +SS+ SSSSSS  PA P
Sbjct: 100 SASSSSSSSSSSPPPASP 117



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLP 223
           SSS SSSS P  S P+SSP     L P  P  +FS   +  +   L LP
Sbjct: 104 SSSSSSSSPPPASPPASSPPRVLEL-PGVPAAAFSDVLNFIYSARLALP 151



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 154 LPLFLLLPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPP 206
           L L+ LLP+      P       +P +  SP+ ++P+     +SP P PPP P
Sbjct: 412 LKLYRLLPMRAAKR-PYKTYSQGAPEAPLSPTLNTPAPVAMPASPPPGPPPAP 463



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 177 SPSSSSSPSYSSPSSSPSSSSPLPPPPPPPS 207
           SP+ ++    + P+S P    P P P PPPS
Sbjct: 440 SPTLNTPAPVAMPASPPPGPPPAPEPGPPPS 470


>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
          Length = 1013

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 29/49 (59%), Positives = 31/49 (63%), Gaps = 6/49 (12%)

Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLP 223
           SSS SSSSS S SS SSS SSSS  PPP  PP      +SS P +L LP
Sbjct: 87  SSSSSSSSSSSSSSASSSSSSSSSSPPPASPP------ASSPPRVLELP 129



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 23/36 (63%), Positives = 24/36 (66%)

Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSS 210
           SSS SSSSS S SS +SS SSSS   PPP  P  SS
Sbjct: 86  SSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASS 121



 Score = 32.3 bits (72), Expect = 0.42
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 12/79 (15%)

Query: 172 LLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLS 231
           +L +SSP    +   S+P   P ++    P P   + +SSSSSS               S
Sbjct: 47  VLAASSPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSS------------SS 94

Query: 232 SFSSSTFSSSSSSSFPALP 250
           S SSS+ SSSSSSS  + P
Sbjct: 95  SSSSSSASSSSSSSSSSPP 113



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 27/78 (34%)

Query: 173 LPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSS 232
           LP ++  ++ +P+ ++ +SS SSSS           SSSSSS                SS
Sbjct: 67  LPPATGGAAPNPATTTAASSSSSSS-----------SSSSSS----------------SS 99

Query: 233 FSSSTFSSSSSSSFPALP 250
            +SS+ SSSSSS  PA P
Sbjct: 100 SASSSSSSSSSSPPPASP 117



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLP 223
           SSS SSSS P  S P+SSP     L P  P  +FS   +  +   L LP
Sbjct: 104 SSSSSSSSPPPASPPASSPPRVLEL-PGVPAAAFSDVLNFIYSARLALP 151



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 154 LPLFLLLPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPP 206
           L L+ LLP+      P       +P +  SP+ ++P+     +SP P PPP P
Sbjct: 412 LKLYRLLPMRAAKR-PYKTYSQGAPEAPLSPTLNTPAPVAMPASPPPGPPPAP 463



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 177 SPSSSSSPSYSSPSSSPSSSSPLPPPPPPPS 207
           SP+ ++    + P+S P    P P P PPPS
Sbjct: 440 SPTLNTPAPVAMPASPPPGPPPAPEPGPPPS 470


>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
           sapiens]
          Length = 1059

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 31/69 (44%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 167 FIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPL----PPPPPPPSFSSSSSSSFPFLLLL 222
           F P   +PSSS SSSSS S SS SSS SSSS      P PP PP+F +     F      
Sbjct: 85  FKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAFGAPPPPLFDAAFPT 144

Query: 223 PLFFLLLLS 231
           P + ++ LS
Sbjct: 145 PQWGIVDLS 153



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 167 FIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFF 226
           F P+ L    + + ++ P    P   P      PP PPPP +     S+F     +P   
Sbjct: 42  FEPMELYGEHAKAVAALPCAPGPPPQP------PPQPPPPQYDYPPQSTFKPKAEVPSSS 95

Query: 227 LLLLSSFSSSTFSSSSSSS 245
               SS SSS+ SSSSSSS
Sbjct: 96  SSSSSSSSSSSSSSSSSSS 114



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 26/73 (35%)

Query: 178 PSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSST 237
           P S+  P    PSSS SSSS           SSSSSSS               SS SSS+
Sbjct: 81  PQSTFKPKAEVPSSSSSSSS-----------SSSSSSS---------------SSSSSSS 114

Query: 238 FSSSSSSSFPALP 250
            SS +    P LP
Sbjct: 115 SSSQAKKPDPPLP 127


>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
           sapiens]
          Length = 1059

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 31/69 (44%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 167 FIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPL----PPPPPPPSFSSSSSSSFPFLLLL 222
           F P   +PSSS SSSSS S SS SSS SSSS      P PP PP+F +     F      
Sbjct: 85  FKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAFGAPPPPLFDAAFPT 144

Query: 223 PLFFLLLLS 231
           P + ++ LS
Sbjct: 145 PQWGIVDLS 153



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 167 FIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFF 226
           F P+ L    + + ++ P    P   P      PP PPPP +     S+F     +P   
Sbjct: 42  FEPMELYGEHAKAVAALPCAPGPPPQP------PPQPPPPQYDYPPQSTFKPKAEVPSSS 95

Query: 227 LLLLSSFSSSTFSSSSSSS 245
               SS SSS+ SSSSSSS
Sbjct: 96  SSSSSSSSSSSSSSSSSSS 114



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 26/73 (35%)

Query: 178 PSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSST 237
           P S+  P    PSSS SSSS           SSSSSSS               SS SSS+
Sbjct: 81  PQSTFKPKAEVPSSSSSSSS-----------SSSSSSS---------------SSSSSSS 114

Query: 238 FSSSSSSSFPALP 250
            SS +    P LP
Sbjct: 115 SSSQAKKPDPPLP 127


>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
            sapiens]
          Length = 1584

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query: 173  LPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPP 206
            LP+ SP S   PS   P + P+   P PPPPPPP
Sbjct: 1388 LPARSPPSRQPPSGGPPEAPPAQPPPPPPPPPPP 1421



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 17/39 (43%), Positives = 20/39 (51%)

Query: 168  IPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPP 206
            I L   P +S  + S PS   PS  P  + P  PPPPPP
Sbjct: 1378 IHLSTAPEASLPARSPPSRQPPSGGPPEAPPAQPPPPPP 1416


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 17/97 (17%)

Query: 17   TLGPGTGPGTEWA----------GNEGLLGTVGEKGTEALRGKR--KGEVEGQTGREGKV 64
            +LGP   PG   A          G++G++G +G  G +  +G++   G+ EG  G  G  
Sbjct: 1289 SLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDR 1348

Query: 65   -----RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
                 RG++   GDP  P Q G + ++ K G    PG
Sbjct: 1349 GPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPG 1385



 Score = 35.8 bits (81), Expect = 0.038
 Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 19   GPGTGPGTEW-AGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGK--VRGEQSLHGDP 74
            GP   PG +  AG +G  G  G+ G     GKR    V G  G +G    +GE  L G  
Sbjct: 1442 GPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQL 1501

Query: 75   RRPHQRGTEAVKWKDGGLRDPG 96
              P +RGTE      G   +PG
Sbjct: 1502 GPPGKRGTEGRTGLPGNQGEPG 1523



 Score = 33.5 bits (75), Expect = 0.19
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 19   GPGTGPG-TEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRP 77
            GP   PG T   G EG  G  GEKG    +G +        G +G++ GE  + GDP  P
Sbjct: 1228 GPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAK--------GYQGQL-GEMGVPGDPGPP 1278

Query: 78   HQRGTEAVKWKDGGLRDPGQWTSEPE 103
               G +  +   G    PG+  ++ E
Sbjct: 1279 GTPGPKGSRGSLGPTGAPGRMGAQGE 1304



 Score = 33.1 bits (74), Expect = 0.24
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 18  LGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRP 77
           LGP   PG +  G +GL+G+VGE G +  +G++   V G +G  G  +G++   G P  P
Sbjct: 828 LGPIGYPGPK--GMKGLMGSVGEPGLKGDKGEQ--GVPGVSGDPG-FQGDKGSQGLPGFP 882

Query: 78  HQRG 81
             RG
Sbjct: 883 GARG 886



 Score = 32.3 bits (72), Expect = 0.42
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 17/95 (17%)

Query: 18   LGPGTGPGTEWAGNEGLLGTVGEKGTEALRGK-----RKGEVE--------GQTGREGKV 64
            +GP   PG E  G  G  G  G  G + ++G+     R G V         G  G  G V
Sbjct: 951  MGPPGAPGLE--GQPGRKGFPGRPGLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEPGIV 1008

Query: 65   --RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQ 97
              +G++ + G P  P  +G+       GG+  PG+
Sbjct: 1009 GEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGE 1043



 Score = 32.3 bits (72), Expect = 0.42
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 20   PGTGPGTEWAGNEGLLGTVGEKGTEALRGK--RKGE--VEGQTGREGK--VRGEQSLHGD 73
            PG   G    G  G  G  G +G   +RG   R+G    +G  G +G   ++G     G 
Sbjct: 1032 PGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGR 1091

Query: 74   PRRPHQRGTEAVKWKDGGLRDPG 96
            P RP Q+G    +   G    PG
Sbjct: 1092 PGRPGQQGVAGERGHLGSRGFPG 1114



 Score = 32.3 bits (72), Expect = 0.42
 Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 18   LGPGTGPGTEWA----GNEGLLGTVGEKGTEALRGKR-----KGEVEGQTGREGKVRGEQ 68
            LGP   PG +      G  GL G  G  G + L+G R      GE  G+ G+EG + GE 
Sbjct: 1170 LGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGDRGDPGPDGE-HGEKGQEG-LMGED 1227

Query: 69   SLHGDPRRPHQRGTEAVKWKDG 90
               G P     RG E    K G
Sbjct: 1228 GPPGPPGVTGVRGPEGKSGKQG 1249



 Score = 31.6 bits (70), Expect = 0.71
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 20   PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGK--VRGEQSLHGDPRRP 77
            PG        G+ G LGT GE+G    RG  +  +EG +G  G   ++G++   G     
Sbjct: 1158 PGLPGEAGMKGDLGPLGTPGEQGLIGQRG--EPGLEGDSGPMGPDGLKGDRGDPGPDGEH 1215

Query: 78   HQRGTEAVKWKDGGLRDPG 96
             ++G E +  +DG    PG
Sbjct: 1216 GEKGQEGLMGEDGPPGPPG 1234



 Score = 31.2 bits (69), Expect = 0.93
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 14/90 (15%)

Query: 19  GPGTGPGTE-WAGNEGLLGTVGEKGTEALRG-----------KRKGEVEGQTGREGKVRG 66
           GP   PG + + G +GL G VG+ G +  RG              GE  G  G  GK RG
Sbjct: 727 GPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGE-RGLPGVPGK-RG 784

Query: 67  EQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
           +  + G P    +RG   +    G L  PG
Sbjct: 785 KMGMPGFPGVFGERGPPGLDGNPGELGLPG 814



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 22/107 (20%)

Query: 165 PLFIPLFLLPSSSPSSSSSP------SYSSPSSSPSSSSPLPP-------------PPPP 205
           P   P    P S+P+ S  P        + P SSP    PL P               P 
Sbjct: 517 PRTAPAVPTPGSAPTGSKKPIGSEASKKAGPKSSPRKPVPLRPGKAARDVPLSDLTTRPS 576

Query: 206 PSFSSSSSSSFPFLLLLPLFFLLLL---SSFSSSTFSSSSSSSFPAL 249
           P     S  + P L+L P  FL      +S   S F  + S+ FP L
Sbjct: 577 PRQPQPSQQTTPALVLAPAQFLSSSPRPTSSGYSIFHLAGSTPFPLL 623



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 14/87 (16%)

Query: 20   PGTGPGTEWAGNEGLLGTVGEKGTEALRGK--RKGEVEGQTGREGK--VRGEQSLHGD-- 73
            PG      W G +G  G  G KG +   G   R+G V+G  G  G   V G Q L G   
Sbjct: 1384 PGHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRG-VQGLQGLPGPRGVVGRQGLEGIAG 1442

Query: 74   ----PRRPHQRGTEAVKWKDGGLRDPG 96
                P R  Q G +  +  DG   DPG
Sbjct: 1443 PDGLPGRDGQAGQQGEQGDDG---DPG 1466



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 30   GNEGLLGTVGEKGTEALRG-KRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTEAVKWK 88
            G+ G  G  G KG++   G K K    G  GR G V+G Q L G      ++G E +   
Sbjct: 1385 GHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRG-VQGLQGLPGPRGVVGRQGLEGIAGP 1443

Query: 89   DGGLRDPGQWTSEPEQ 104
            DG     GQ   + EQ
Sbjct: 1444 DGLPGRDGQAGQQGEQ 1459



 Score = 29.3 bits (64), Expect = 3.5
 Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 14/91 (15%)

Query: 19  GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPH 78
           GP   PG    GN GL G  G KG +   G   G  +   G +G + G   L G+P  P 
Sbjct: 652 GPRGPPGPY--GNPGLPGPPGAKGQKGDPGLSPG--KAHDGAKGDM-GLPGLSGNPGPPG 706

Query: 79  QRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
           ++G +           PG      EQ +P P
Sbjct: 707 RKGHKGY---------PGPAGHPGEQGQPGP 728



 Score = 28.5 bits (62), Expect = 6.0
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 178 PSSSSSPS-YSSPSSSPSSSSPLPPPPPPPS------FSSSSSSSFPFLLLLPLFFLLLL 230
           P+S   P+  S P+  P   +P  P PPPPS       +SSS    P L           
Sbjct: 409 PTSRPVPARVSRPAEKPIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHA 468

Query: 231 SSFSSSTFSSSSSSSFPALPLLP 253
           S  +S+  S+     F AL   P
Sbjct: 469 SKPASARTSTHKPPPFTALSSSP 491


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 41.2 bits (95), Expect = 9e-04
 Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 19  GPGTGPGTEWA----GNEGLLGTVGEKGTEALRGKR--KGEV--EGQTGREGKVRGEQSL 70
           GP   PG +      G  G  G  GE+G + L GK   +GE+  +G  GR G+ +GE  L
Sbjct: 747 GPTGPPGKDGPNGPPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGE-KGEAGL 805

Query: 71  HGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
            G P  P  RG +  + + G L  PG      E+ E  P
Sbjct: 806 PGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGP 844



 Score = 30.8 bits (68), Expect = 1.2
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 30  GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTEAVKWKD 89
           G +G +G +G  G    +G+ KG+V      +G+ +GE+   G P  P + G++ ++ + 
Sbjct: 496 GPKGDIGAIGPVGAPGPKGE-KGDVGIGPFGQGE-KGEKGSLGLPGPPGRDGSKGMRGEP 553

Query: 90  GGLRDPG 96
           G L +PG
Sbjct: 554 GELGEPG 560



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 12/85 (14%)

Query: 19   GPGTGPGTEWA----------GNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGKVR-G 66
            GP   PG+  A          G  G  G  GE+G+    G R      G  G  GK + G
Sbjct: 928  GPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDG 987

Query: 67   EQSLHGDPRRPHQRGTEAVKWKDGG 91
            E  L G P  P   GT+A   K  G
Sbjct: 988  EPGLRGSPGLPGPLGTKAACGKVRG 1012



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 26/65 (40%), Positives = 28/65 (43%), Gaps = 10/65 (15%)

Query: 19  GPGTGPGTEW-AGNEGLLGTVGEKGTEALRGKR-------KGEVEGQTGREGK--VRGEQ 68
           GP   PG     G  GL G  GEKGT   +G+R       K    GQ GR G   V G Q
Sbjct: 572 GPPGLPGPPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQ 631

Query: 69  SLHGD 73
              GD
Sbjct: 632 GEKGD 636



 Score = 28.5 bits (62), Expect = 6.0
 Identities = 31/82 (37%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 20  PGTGPGTEWAGNEGLLGTVGEKGTEALRGK--RKGEVEGQTGREGKVRGEQSLHGDPRRP 77
           PG        G  G  G+VG  G     GK   +GE +G  G EG   G     GDP  P
Sbjct: 918 PGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGE-KGAAGEEGS-PGPVGPRGDPGAP 975

Query: 78  HQRGTEAVKWKDG--GLR-DPG 96
              G    K KDG  GLR  PG
Sbjct: 976 GLPGPPG-KGKDGEPGLRGSPG 996


>gi|239756825 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234
           S + S+S++ S  S S++ SSS   P P   PSFS S+S SF  LL+L      L  SF+
Sbjct: 61  SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLS-----LAGSFT 115

Query: 235 SS 236
           SS
Sbjct: 116 SS 117


>gi|239751326 PREDICTED: hypothetical protein XP_002347792 [Homo
           sapiens]
          Length = 117

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234
           S + S+S++ S  S S++ SSS   P P   PSFS S+S SF  LL+L      L  SF+
Sbjct: 61  SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLS-----LAGSFT 115

Query: 235 SS 236
           SS
Sbjct: 116 SS 117


>gi|239745825 PREDICTED: hypothetical protein XP_002343558 [Homo
           sapiens]
          Length = 117

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234
           S + S+S++ S  S S++ SSS   P P   PSFS S+S SF  LL+L      L  SF+
Sbjct: 61  SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLS-----LAGSFT 115

Query: 235 SS 236
           SS
Sbjct: 116 SS 117


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 24/43 (55%), Positives = 26/43 (60%)

Query: 175  SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
            SSS SSSSS S SS SSS SSSSP P  P P +    +S   P
Sbjct: 2626 SSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKP 2668



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 27/43 (62%), Positives = 27/43 (62%)

Query: 175  SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
            SSS SSSSS S SS SSS SSSS         S SSSSSSS P
Sbjct: 2607 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSP 2649



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 43/111 (38%), Positives = 44/111 (39%), Gaps = 35/111 (31%)

Query: 175  SSSPSSSSSPSYSSPSSSPSSSSPLP-------------------------PPPPPP--- 206
            SSS SSSSS S S  SSS S  S LP                         PP P P   
Sbjct: 2544 SSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKR 2603

Query: 207  -------SFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSSSSSSSFPALP 250
                   S SSSSSSS               SS SSS+ SSSSSS  PA P
Sbjct: 2604 KRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKP 2654



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 37/78 (47%), Positives = 39/78 (50%), Gaps = 24/78 (30%)

Query: 176  SSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSS 235
            SS SSSSS S SS SSS SSSS         S SSSSSSS               SS SS
Sbjct: 2607 SSSSSSSSSSSSSSSSSSSSSS---------SSSSSSSSS---------------SSSSS 2642

Query: 236  STFSSSSSSSFPALPLLP 253
            S+ SSS S + P    LP
Sbjct: 2643 SSSSSSPSPAKPGPQALP 2660



 Score = 33.1 bits (74), Expect = 0.24
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 15/72 (20%)

Query: 174  PSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSF 233
            P    S    P  S+ +  PS+ + L P     S SSSSSSS               SS 
Sbjct: 2499 PGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSS---------------SSS 2543

Query: 234  SSSTFSSSSSSS 245
            SSS+ SSSSSSS
Sbjct: 2544 SSSSSSSSSSSS 2555



 Score = 32.7 bits (73), Expect = 0.32
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 169 PLFLLPSSSPSSSSSPSYSSPSSSP-----SSSSPLPPPPPPPSFSSSSSSSFP 217
           PL   P + PS +S     SP  SP     SSSS   PP P P+  S  +SS P
Sbjct: 385 PLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSP 438



 Score = 32.7 bits (73), Expect = 0.32
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 175  SSSPSSSSSPSYSSPSSSPSSSSPLPPPP 203
            SSS SSS SP+   P + P  +SP  PPP
Sbjct: 2642 SSSSSSSPSPAKPGPQALPKPASPKKPPP 2670



 Score = 32.3 bits (72), Expect = 0.42
 Identities = 22/46 (47%), Positives = 23/46 (50%)

Query: 172  LLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
            L P+    SSSS S SS SSS SSSS         S S S  SS P
Sbjct: 2524 LQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLP 2569



 Score = 30.8 bits (68), Expect = 1.2
 Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 173 LPSSSPSSSSSPSYSSP------SSSPSSSSPLPPPPPPPSFSSSSSS 214
           LP SS S SS PS          SSSP S  P P P      SSS +S
Sbjct: 412 LPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTS 459



 Score = 29.3 bits (64), Expect = 3.5
 Identities = 18/41 (43%), Positives = 19/41 (46%)

Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
           SSS SS  SP  +  S   SSS   P P P P      SSS
Sbjct: 416 SSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSS 456



 Score = 29.3 bits (64), Expect = 3.5
 Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 25/80 (31%)

Query: 174  PSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSF 233
            PS+  +   +    S SSS SSSS           SSSSSSS               SS 
Sbjct: 2518 PSALAALQPAKERRSSSSSSSSSSS----------SSSSSSS---------------SSS 2552

Query: 234  SSSTFSSSSSSSFPALPLLP 253
            SSS+ SSSS S   +LP+ P
Sbjct: 2553 SSSSGSSSSDSEGSSLPVQP 2572



 Score = 29.3 bits (64), Expect = 3.5
 Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 26/78 (33%)

Query: 173  LPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSS 232
            L +  P+     S SS SSS SSSS           SSSSSSS               SS
Sbjct: 2521 LAALQPAKERRSSSSSSSSSSSSSS-----------SSSSSSS---------------SS 2554

Query: 233  FSSSTFSSSSSSSFPALP 250
             S S+ S S  SS P  P
Sbjct: 2555 SSGSSSSDSEGSSLPVQP 2572


>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
           sapiens]
          Length = 828

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 19  GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE----VEGQTGREGKVRGEQSLHGDP 74
           GP   PG       G  G  GEKG    RG   G     ++G+ GR+G+ +GE +  G P
Sbjct: 505 GPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGE-KGEPADPGPP 563

Query: 75  RRPHQRGTEAVKWKDGGLRDPG 96
             P  RG   V   +G    PG
Sbjct: 564 GEPGPRGPRGVPGPEGEPGPPG 585



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 19  GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRR-- 76
           GP   PG  + G +G  G  G KG   L GK     +GQ G+ G++ G     GDP    
Sbjct: 298 GPKGVPG--FKGEKGEFGADGRKGAPGLAGKNG--TDGQKGKLGRI-GPPGCKGDPGNRG 352

Query: 77  ----PHQRGTEAVKWKDGGLRDPGQ 97
               P + G+   +   GG  DPG+
Sbjct: 353 PDGYPGEAGSPGERGDQGGKGDPGR 377



 Score = 36.6 bits (83), Expect = 0.022
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 20  PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGKVRGEQSLHGDPRRPH 78
           PG        G +G LG +G  G +   G R  +   G+ G  G+ RG+Q   GDP RP 
Sbjct: 321 PGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGE-RGDQGGKGDPGRPG 379

Query: 79  QRG 81
           +RG
Sbjct: 380 RRG 382



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 30  GNEGLLGTVGEKGTEALRGKR-KGEVEGQTGREG-KVRGEQSLHGDPRRPHQRGTEAVKW 87
           G  G  G+ G+ G    RG   +   +G  GR G    G +   G+   P  RG E  + 
Sbjct: 481 GEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRG 540

Query: 88  KDGGLRDPGQWTSEPEQTEPSP 109
             G   +PG+   + E  +P P
Sbjct: 541 DFGLKGEPGRKGEKGEPADPGP 562



 Score = 29.3 bits (64), Expect = 3.5
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 16/91 (17%)

Query: 20  PGTGPGTEWAGNEGLLGTVGEKGTEALRGKR--------------KGEVEGQTGREGKVR 65
           PG      + G +G  G +GE G    +G++              KG V G  G +G+  
Sbjct: 255 PGPSGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKG-VPGFKGEKGEF- 312

Query: 66  GEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
           G     G P    + GT+  K K G +  PG
Sbjct: 313 GADGRKGAPGLAGKNGTDGQKGKLGRIGPPG 343


>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
           sapiens]
          Length = 918

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 19  GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE----VEGQTGREGKVRGEQSLHGDP 74
           GP   PG       G  G  GEKG    RG   G     ++G+ GR+G+ +GE +  G P
Sbjct: 505 GPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGE-KGEPADPGPP 563

Query: 75  RRPHQRGTEAVKWKDGGLRDPG 96
             P  RG   V   +G    PG
Sbjct: 564 GEPGPRGPRGVPGPEGEPGPPG 585



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 19  GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRR-- 76
           GP   PG  + G +G  G  G KG   L GK     +GQ G+ G++ G     GDP    
Sbjct: 298 GPKGVPG--FKGEKGEFGADGRKGAPGLAGKNG--TDGQKGKLGRI-GPPGCKGDPGNRG 352

Query: 77  ----PHQRGTEAVKWKDGGLRDPGQ 97
               P + G+   +   GG  DPG+
Sbjct: 353 PDGYPGEAGSPGERGDQGGKGDPGR 377



 Score = 36.6 bits (83), Expect = 0.022
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 20  PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGKVRGEQSLHGDPRRPH 78
           PG        G +G LG +G  G +   G R  +   G+ G  G+ RG+Q   GDP RP 
Sbjct: 321 PGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGE-RGDQGGKGDPGRPG 379

Query: 79  QRG 81
           +RG
Sbjct: 380 RRG 382



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 30  GNEGLLGTVGEKGTEALRGKR-KGEVEGQTGREG-KVRGEQSLHGDPRRPHQRGTEAVKW 87
           G  G  G+ G+ G    RG   +   +G  GR G    G +   G+   P  RG E  + 
Sbjct: 481 GEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRG 540

Query: 88  KDGGLRDPGQWTSEPEQTEPSP 109
             G   +PG+   + E  +P P
Sbjct: 541 DFGLKGEPGRKGEKGEPADPGP 562



 Score = 29.3 bits (64), Expect = 3.5
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 16/91 (17%)

Query: 20  PGTGPGTEWAGNEGLLGTVGEKGTEALRGKR--------------KGEVEGQTGREGKVR 65
           PG      + G +G  G +GE G    +G++              KG V G  G +G+  
Sbjct: 255 PGPSGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKG-VPGFKGEKGEF- 312

Query: 66  GEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
           G     G P    + GT+  K K G +  PG
Sbjct: 313 GADGRKGAPGLAGKNGTDGQKGKLGRIGPPG 343


>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
           sapiens]
          Length = 1019

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 19  GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE----VEGQTGREGKVRGEQSLHGDP 74
           GP   PG       G  G  GEKG    RG   G     ++G+ GR+G+ +GE +  G P
Sbjct: 505 GPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGE-KGEPADPGPP 563

Query: 75  RRPHQRGTEAVKWKDGGLRDPG 96
             P  RG   V   +G    PG
Sbjct: 564 GEPGPRGPRGVPGPEGEPGPPG 585



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 19  GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRR-- 76
           GP   PG  + G +G  G  G KG   L GK     +GQ G+ G++ G     GDP    
Sbjct: 298 GPKGVPG--FKGEKGEFGADGRKGAPGLAGKNG--TDGQKGKLGRI-GPPGCKGDPGNRG 352

Query: 77  ----PHQRGTEAVKWKDGGLRDPGQ 97
               P + G+   +   GG  DPG+
Sbjct: 353 PDGYPGEAGSPGERGDQGGKGDPGR 377



 Score = 36.6 bits (83), Expect = 0.022
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 20  PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGKVRGEQSLHGDPRRPH 78
           PG        G +G LG +G  G +   G R  +   G+ G  G+ RG+Q   GDP RP 
Sbjct: 321 PGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGE-RGDQGGKGDPGRPG 379

Query: 79  QRG 81
           +RG
Sbjct: 380 RRG 382



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 30  GNEGLLGTVGEKGTEALRGKR-KGEVEGQTGREG-KVRGEQSLHGDPRRPHQRGTEAVKW 87
           G  G  G+ G+ G    RG   +   +G  GR G    G +   G+   P  RG E  + 
Sbjct: 481 GEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRG 540

Query: 88  KDGGLRDPGQWTSEPEQTEPSP 109
             G   +PG+   + E  +P P
Sbjct: 541 DFGLKGEPGRKGEKGEPADPGP 562



 Score = 29.3 bits (64), Expect = 3.5
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 16/91 (17%)

Query: 20  PGTGPGTEWAGNEGLLGTVGEKGTEALRGKR--------------KGEVEGQTGREGKVR 65
           PG      + G +G  G +GE G    +G++              KG V G  G +G+  
Sbjct: 255 PGPSGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKG-VPGFKGEKGEF- 312

Query: 66  GEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
           G     G P    + GT+  K K G +  PG
Sbjct: 313 GADGRKGAPGLAGKNGTDGQKGKLGRIGPPG 343


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 169  PLFLLPSSSPSSSSSPSYSSP----SSSPSSSSPLPPPPPPP 206
            P   LPS SPS SS P+   P    SS   S+ P PPPPPPP
Sbjct: 2372 PASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPP 2413



 Score = 29.3 bits (64), Expect = 3.5
 Identities = 14/41 (34%), Positives = 17/41 (41%)

Query: 177 SPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
           SP+  S+   + P S   S  PL PP   PS     S   P
Sbjct: 545 SPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQGLP 585



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 176  SSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
            SS     S  +S P+S+ SSS P P  P  PS S     S
Sbjct: 4641 SSVVEKGSHVHSGPTSAGSSSVPSPGQPGSPSVSKKKHGS 4680


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 169  PLFLLPSSSPSSSSSPSYSSP----SSSPSSSSPLPPPPPPP 206
            P   LPS SPS SS P+   P    SS   S+ P PPPPPPP
Sbjct: 2372 PASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPP 2413



 Score = 29.3 bits (64), Expect = 3.5
 Identities = 14/41 (34%), Positives = 17/41 (41%)

Query: 177 SPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
           SP+  S+   + P S   S  PL PP   PS     S   P
Sbjct: 545 SPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQGLP 585



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 176  SSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
            SS     S  +S P+S+ SSS P P  P  PS S     S
Sbjct: 4641 SSVVEKGSHVHSGPTSAGSSSVPSPGQPGSPSVSKKKHGS 4680


>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
          Length = 1243

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 32/85 (37%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 172 LLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPF-LLLLPLFFLLLL 230
           + P +SP    SPS  SP SS  SS+P P P   P   SSS+  FP  L   P   L   
Sbjct: 828 IFPITSPPCHPSPSPFSPISSQVSSNPSPHPTSSPLPFSSSTPEFPVPLSQCPWSSLPTT 887

Query: 231 SSFSSSTFSSSSSSSFPALPLLPHT 255
           S  + S   S  + S P  P  P T
Sbjct: 888 SPPTFSPTCSQVTLSSPFFPPCPST 912



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 168 IPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFL 227
           +PL   P SS  ++S P++S   S  + SSP  PP P       S+SSFP     PL  L
Sbjct: 874 VPLSQCPWSSLPTTSPPTFSPTCSQVTLSSPFFPPCP-------STSSFPSTTAAPLLSL 926

Query: 228 LLLSSFSSSTFSSSSSSSFPAL 249
               S +  T + S  S  P L
Sbjct: 927 ASAFSLAVMTVAQSLLSPSPGL 948


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,813,352
Number of Sequences: 37866
Number of extensions: 909939
Number of successful extensions: 34223
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 579
Number of HSP's that attempted gapping in prelim test: 17269
Number of HSP's gapped (non-prelim): 11945
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.