Search of human proteins with 117606330

Search of human proteins with 117606330

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|117606330 RNA (guanine-9-) methyltransferase domain
containing 3 [Homo sapiens]
         (316 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|117606330 RNA (guanine-9-) methyltransferase domain containin...   642   0.0  
gi|197927265 RNA (guanine-9-) methyltransferase domain containin...   122   3e-28
gi|197927261 RNA (guanine-9-) methyltransferase domain containin...   122   3e-28
gi|22748659 RNA (guanine-9-) methyltransferase domain containing...   122   3e-28
gi|117647226 RNA (guanine-9-) methyltransferase domain containin...    96   3e-20
gi|19557702 surfeit 6 [Homo sapiens]                                   32   0.57 
gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens]          32   0.74 
gi|13376854 UBX domain protein 6 [Homo sapiens]                        32   0.96 
gi|42560244 peptidylprolyl isomerase G [Homo sapiens]                  31   1.6  
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot...    30   2.1  
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot...    30   2.1  
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot...    30   2.1  
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot...    30   2.1  
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot...    30   2.1  
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote...    30   2.1  
gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo...    30   2.1  
gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo...    30   2.1  
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi...    30   2.1  
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap...    30   2.1  
gi|30794372 polybromo 1 isoform 1 [Homo sapiens]                       30   2.8  
gi|93102371 polybromo 1 isoform 2 [Homo sapiens]                       30   2.8  
gi|41281917 polybromo 1 isoform 4 [Homo sapiens]                       30   2.8  
gi|5031815 lysyl-tRNA synthetase isoform 2 [Homo sapiens]              30   3.7  
gi|32967605 bromodomain adjacent to zinc finger domain, 1A isofo...    30   3.7  
gi|32967603 bromodomain adjacent to zinc finger domain, 1A isofo...    30   3.7  
gi|93204861 protein phosphatase 1, regulatory (inhibitor) subuni...    30   3.7  
gi|31657119 carboxypeptidase 2, cytosolic [Homo sapiens]               29   4.8  
gi|156142178 coiled-coil domain containing 59 [Homo sapiens]           29   4.8  
gi|21687020 ecotropic viral integration site 5-like isoform 2 [H...    29   6.2  
gi|5729790 CCCTC-binding factor [Homo sapiens]                         29   6.2  

>gi|117606330 RNA (guanine-9-) methyltransferase domain containing 3
           [Homo sapiens]
          Length = 316

 Score =  642 bits (1656), Expect = 0.0
 Identities = 316/316 (100%), Positives = 316/316 (100%)

Query: 1   MDWKLEGSTQKVESPVLQGQEGILEETGEDGLPEGFQLLQIDAEGECQEGEILATGSTAW 60
           MDWKLEGSTQKVESPVLQGQEGILEETGEDGLPEGFQLLQIDAEGECQEGEILATGSTAW
Sbjct: 1   MDWKLEGSTQKVESPVLQGQEGILEETGEDGLPEGFQLLQIDAEGECQEGEILATGSTAW 60

Query: 61  CSKNVQRKQRHWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRALTKDKLLEA 120
           CSKNVQRKQRHWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRALTKDKLLEA
Sbjct: 61  CSKNVQRKQRHWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRALTKDKLLEA 120

Query: 121 KHSGPRLCIDLSMTHYMSKKELSRLAGQIRRLYGSNKKADRPFWICLTGFTTDSPLYEEC 180
           KHSGPRLCIDLSMTHYMSKKELSRLAGQIRRLYGSNKKADRPFWICLTGFTTDSPLYEEC
Sbjct: 121 KHSGPRLCIDLSMTHYMSKKELSRLAGQIRRLYGSNKKADRPFWICLTGFTTDSPLYEEC 180

Query: 181 VRMNDGFSSYLLDITEEDCFSLFPLETLVYLTPDSEHALEDVDLNKVYILGGLVDESIQK 240
           VRMNDGFSSYLLDITEEDCFSLFPLETLVYLTPDSEHALEDVDLNKVYILGGLVDESIQK
Sbjct: 181 VRMNDGFSSYLLDITEEDCFSLFPLETLVYLTPDSEHALEDVDLNKVYILGGLVDESIQK 240

Query: 241 KVTFQKAREYSVKTARLPIQEYMVRNQNGKNYHSEILAINQVFDILSTYLETHNWPEALK 300
           KVTFQKAREYSVKTARLPIQEYMVRNQNGKNYHSEILAINQVFDILSTYLETHNWPEALK
Sbjct: 241 KVTFQKAREYSVKTARLPIQEYMVRNQNGKNYHSEILAINQVFDILSTYLETHNWPEALK 300

Query: 301 KGVSSGKGYILRNSVE 316
           KGVSSGKGYILRNSVE
Sbjct: 301 KGVSSGKGYILRNSVE 316


>gi|197927265 RNA (guanine-9-) methyltransferase domain containing 2
           [Homo sapiens]
          Length = 339

 Score =  122 bits (307), Expect = 3e-28
 Identities = 79/246 (32%), Positives = 127/246 (51%), Gaps = 19/246 (7%)

Query: 68  KQRHWEKIVAAKKSKRKQEKERRKANRA--ENPGICPQHSKRFLRALTKDKLLEAKHSGP 125
           KQ+ WE+    +K KRK++++R+K  R     P       KR  R        +  HS  
Sbjct: 50  KQKQWEEQRELRKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRR--------DVVHSTL 101

Query: 126 RLCIDLSMTHYMSKKELSRLAGQIRRLYGSNKKADRPFWICLTGFTTDSPLYEECVRMND 185
           RL ID S  H M  K++ +L  QI+R Y  N++A  P    LT       L +     + 
Sbjct: 102 RLIIDCSFDHLMVLKDIKKLHKQIQRCYAENRRALHPVQFYLTSH--GGQLKKNMDENDK 159

Query: 186 GFSSYL-LDITEEDCFSLFPLETLVYLTPDSEHALEDVDLNKVYILGGLVDESIQKKVTF 244
           G+ ++  + I  E    L   E L+YLT DS + L+++D +K Y++GGLVD +  K +T+
Sbjct: 160 GWVNWKDIHIKPEHYSELIKKEDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTY 219

Query: 245 QKAREYSVKTARLPIQEYMVRNQNGKNYHSEILAINQVFDILSTYLETHNWPEALKKGVS 304
           ++A +Y +  A+LP+  ++  N        ++LA+N VF+I+  YLET +W EA    + 
Sbjct: 220 KQASDYGINHAQLPLGNFVKMNSR------KVLAVNHVFEIILEYLETRDWQEAFFTILP 273

Query: 305 SGKGYI 310
             KG +
Sbjct: 274 QRKGAV 279


>gi|197927261 RNA (guanine-9-) methyltransferase domain containing 2
           [Homo sapiens]
          Length = 339

 Score =  122 bits (307), Expect = 3e-28
 Identities = 79/246 (32%), Positives = 127/246 (51%), Gaps = 19/246 (7%)

Query: 68  KQRHWEKIVAAKKSKRKQEKERRKANRA--ENPGICPQHSKRFLRALTKDKLLEAKHSGP 125
           KQ+ WE+    +K KRK++++R+K  R     P       KR  R        +  HS  
Sbjct: 50  KQKQWEEQRELRKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRR--------DVVHSTL 101

Query: 126 RLCIDLSMTHYMSKKELSRLAGQIRRLYGSNKKADRPFWICLTGFTTDSPLYEECVRMND 185
           RL ID S  H M  K++ +L  QI+R Y  N++A  P    LT       L +     + 
Sbjct: 102 RLIIDCSFDHLMVLKDIKKLHKQIQRCYAENRRALHPVQFYLTSH--GGQLKKNMDENDK 159

Query: 186 GFSSYL-LDITEEDCFSLFPLETLVYLTPDSEHALEDVDLNKVYILGGLVDESIQKKVTF 244
           G+ ++  + I  E    L   E L+YLT DS + L+++D +K Y++GGLVD +  K +T+
Sbjct: 160 GWVNWKDIHIKPEHYSELIKKEDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTY 219

Query: 245 QKAREYSVKTARLPIQEYMVRNQNGKNYHSEILAINQVFDILSTYLETHNWPEALKKGVS 304
           ++A +Y +  A+LP+  ++  N        ++LA+N VF+I+  YLET +W EA    + 
Sbjct: 220 KQASDYGINHAQLPLGNFVKMNSR------KVLAVNHVFEIILEYLETRDWQEAFFTILP 273

Query: 305 SGKGYI 310
             KG +
Sbjct: 274 QRKGAV 279


>gi|22748659 RNA (guanine-9-) methyltransferase domain containing 2
           [Homo sapiens]
          Length = 339

 Score =  122 bits (307), Expect = 3e-28
 Identities = 79/246 (32%), Positives = 127/246 (51%), Gaps = 19/246 (7%)

Query: 68  KQRHWEKIVAAKKSKRKQEKERRKANRA--ENPGICPQHSKRFLRALTKDKLLEAKHSGP 125
           KQ+ WE+    +K KRK++++R+K  R     P       KR  R        +  HS  
Sbjct: 50  KQKQWEEQRELRKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRR--------DVVHSTL 101

Query: 126 RLCIDLSMTHYMSKKELSRLAGQIRRLYGSNKKADRPFWICLTGFTTDSPLYEECVRMND 185
           RL ID S  H M  K++ +L  QI+R Y  N++A  P    LT       L +     + 
Sbjct: 102 RLIIDCSFDHLMVLKDIKKLHKQIQRCYAENRRALHPVQFYLTSH--GGQLKKNMDENDK 159

Query: 186 GFSSYL-LDITEEDCFSLFPLETLVYLTPDSEHALEDVDLNKVYILGGLVDESIQKKVTF 244
           G+ ++  + I  E    L   E L+YLT DS + L+++D +K Y++GGLVD +  K +T+
Sbjct: 160 GWVNWKDIHIKPEHYSELIKKEDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTY 219

Query: 245 QKAREYSVKTARLPIQEYMVRNQNGKNYHSEILAINQVFDILSTYLETHNWPEALKKGVS 304
           ++A +Y +  A+LP+  ++  N        ++LA+N VF+I+  YLET +W EA    + 
Sbjct: 220 KQASDYGINHAQLPLGNFVKMNSR------KVLAVNHVFEIILEYLETRDWQEAFFTILP 273

Query: 305 SGKGYI 310
             KG +
Sbjct: 274 QRKGAV 279


>gi|117647226 RNA (guanine-9-) methyltransferase domain containing 1
           [Homo sapiens]
          Length = 403

 Score = 96.3 bits (238), Expect = 3e-20
 Identities = 70/237 (29%), Positives = 110/237 (46%), Gaps = 21/237 (8%)

Query: 80  KSKRKQEKERRKANRAENPGIC--------PQHSKRFLRALTKD-------KLLEAKHSG 124
           K  R+ +KE + A R E   I          Q +  FLR   ++       K  +A   G
Sbjct: 143 KKARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFLFLRLWDRNMDIAMGWKGAQAMQFG 202

Query: 125 PRLCIDLSMTHYMSKKELSRLAGQIRRLYGSNKKADRPFWICLTGFTTDSPLYEECV-RM 183
             L  D++  +YM +KEL     Q+    G N++   PF I       D  L+ E V R 
Sbjct: 203 QPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRY 262

Query: 184 NDGFSSYLLDITEEDCFSLFPLETLVYLTPDSEHALEDVDLNKVYILGGLVDESIQKKVT 243
            + +   LL  TE+    LFP ++++YLT DS + +     +KVY++G  VD+S+Q   +
Sbjct: 263 QEKWDKLLLTSTEKSHVDLFPKDSIIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTS 322

Query: 244 FQKAREYSVKTARLPIQEYMVRNQNGKNYHSEILAINQVFDILSTYLETHNWPEALK 300
             KA+  ++ T  LP+ +Y+      KN     L ++Q+  IL       NW EAL+
Sbjct: 323 LAKAKRLNLATECLPLDKYLQWEIGNKN-----LTLDQMIRILLCLKNNGNWQEALQ 374


>gi|19557702 surfeit 6 [Homo sapiens]
          Length = 361

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 63  KNVQRKQRHWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRALTKDKLL 118
           K   ++QR WEK  A    K +Q ++RR+ N         +  +R LRA  K ++L
Sbjct: 298 KRRAQRQRRWEKRTAGVVEKMQQRQDRRRQNLRRKK--AARAERRLLRARKKGRIL 351


>gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens]
          Length = 1621

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 19/113 (16%)

Query: 192 LDITEEDCFSLFPLETLVYLTPDSEHA--LEDVDLNKVYILGGLVDESIQKKVTFQKARE 249
           L +   D + +FPL   +    ++ H   +E+ ++N +  + GL     Q K ++  A  
Sbjct: 489 LGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGL-----QYKKSYDDAE- 542

Query: 250 YSVKTARLPIQEYMVRNQNGKNYHSEILAINQVFDILSTYLETHNWPEALKKG 302
            S+KT R   +  ++ +Q+    H + L IN +          HNWP  LK G
Sbjct: 543 -SLKTLRYG-KIMIMTDQDQDGSHIKGLLINFIH---------HNWPSLLKHG 584


>gi|13376854 UBX domain protein 6 [Homo sapiens]
          Length = 441

 Score = 31.6 bits (70), Expect = 0.96
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 11  KVESPVLQGQEGILEETGEDGLPEGFQLLQIDAEGECQEGEILATGSTAWCSKNVQRKQR 70
           K+++ V Q +   LE T E     GFQ + + A+ +    E      T       Q  +R
Sbjct: 198 KLQNKVFQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFYVLSETTLAQP--QSLER 255

Query: 71  HWEKIVAAKKSKRKQEKERR 90
           H E+++AA+  + K +++RR
Sbjct: 256 HKEQLLAAEPVRAKLDRQRR 275


>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
          Length = 754

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 42  DAEGECQEGEILATGSTAWCSKNVQRKQRHWEKIVAAKKSKRKQEKERRKA---NRAENP 98
           D+  + Q     +   +A   K+ +RK++H +     KK K+K++K ++ A   + AEN 
Sbjct: 205 DSSSDSQSSSDSSDSESATEEKSKKRKKKHRKNSRKHKKEKKKRKKSKKSASSESEAENL 264

Query: 99  GICPQHSKR 107
              PQ + R
Sbjct: 265 EAQPQSTVR 273


>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 6 [Homo sapiens]
          Length = 305

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 68  KQRHWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRALTKDKLLE 119
           ++RH  +  +  KSK  +  E+ +  R+ +P     H  R  R +TKD ++E
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179


>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 2 [Homo sapiens]
          Length = 305

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 68  KQRHWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRALTKDKLLE 119
           ++RH  +  +  KSK  +  E+ +  R+ +P     H  R  R +TKD ++E
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179


>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 68  KQRHWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRALTKDKLLE 119
           ++RH  +  +  KSK  +  E+ +  R+ +P     H  R  R +TKD ++E
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179


>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 68  KQRHWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRALTKDKLLE 119
           ++RH  +  +  KSK  +  E+ +  R+ +P     H  R  R +TKD ++E
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179


>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 68  KQRHWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRALTKDKLLE 119
           ++RH  +  +  KSK  +  E+ +  R+ +P     H  R  R +TKD ++E
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179


>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 3 [Homo sapiens]
          Length = 305

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 68  KQRHWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRALTKDKLLE 119
           ++RH  +  +  KSK  +  E+ +  R+ +P     H  R  R +TKD ++E
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179


>gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo
           sapiens]
          Length = 1272

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 12/31 (38%), Positives = 23/31 (74%)

Query: 66  QRKQRHWEKIVAAKKSKRKQEKERRKANRAE 96
           +RK++  EK+ A ++SK+K+E+E++K    E
Sbjct: 71  ERKKKDEEKVKAEEESKKKEEEEKKKHQEEE 101


>gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo
           sapiens]
          Length = 1272

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 12/31 (38%), Positives = 23/31 (74%)

Query: 66  QRKQRHWEKIVAAKKSKRKQEKERRKANRAE 96
           +RK++  EK+ A ++SK+K+E+E++K    E
Sbjct: 71  ERKKKDEEKVKAEEESKKKEEEEKKKHQEEE 101


>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 68  KQRHWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRALTKDKLLE 119
           ++RH  +  +  KSK  +  E+ +  R+ +P     H  R  R +TKD ++E
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179


>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 68  KQRHWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRALTKDKLLE 119
           ++RH  +  +  KSK  +  E+ +  R+ +P     H  R  R +TKD ++E
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179


>gi|30794372 polybromo 1 isoform 1 [Homo sapiens]
          Length = 1602

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 47  CQEGEILATGSTAWCSKNVQR---KQRHWEKIVAAKKSKRKQEKERRKANRAEN 97
           C+ GEIL + + ++ +K++     K+R  +     ++ K K+E+E+R+A ++E+
Sbjct: 848 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSED 901


>gi|93102371 polybromo 1 isoform 2 [Homo sapiens]
          Length = 1582

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 47  CQEGEILATGSTAWCSKNVQR---KQRHWEKIVAAKKSKRKQEKERRKANRAEN 97
           C+ GEIL + + ++ +K++     K+R  +     ++ K K+E+E+R+A ++E+
Sbjct: 880 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSED 933


>gi|41281917 polybromo 1 isoform 4 [Homo sapiens]
          Length = 1582

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 47  CQEGEILATGSTAWCSKNVQR---KQRHWEKIVAAKKSKRKQEKERRKANRAEN 97
           C+ GEIL + + ++ +K++     K+R  +     ++ K K+E+E+R+A ++E+
Sbjct: 880 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSED 933


>gi|5031815 lysyl-tRNA synthetase isoform 2 [Homo sapiens]
          Length = 597

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 15/107 (14%)

Query: 48  QEGEILATGSTAWCSKNVQRKQRHWEKIVAAKKSKRKQEKERR-------KANRAENPGI 100
           Q  E+   GS    SKN  +++   EK VA K++K+K+  E++         N   + G+
Sbjct: 5   QAAEVKVDGSEPKLSKNELKRRLKAEKKVAEKEAKQKELSEKQLSQATAAATNHTTDNGV 64

Query: 101 CP--------QHSKRFLRALTKDKLLEAKHSGPRLCIDLSMTHYMSK 139
            P        Q+ K   +A+ + K+        +  +D+S+T ++ K
Sbjct: 65  GPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQK 111


>gi|32967605 bromodomain adjacent to zinc finger domain, 1A isoform
           b [Homo sapiens]
          Length = 1524

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 13/47 (27%), Positives = 27/47 (57%)

Query: 66  QRKQRHWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRAL 112
           ++K+   +KIV  ++ K+K+EKER K  R +      +  ++++  L
Sbjct: 346 EKKREELKKIVEEERLKKKEEKERLKVEREKEREKLREEKRKYVEYL 392


>gi|32967603 bromodomain adjacent to zinc finger domain, 1A isoform
           a [Homo sapiens]
          Length = 1556

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 13/47 (27%), Positives = 27/47 (57%)

Query: 66  QRKQRHWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRAL 112
           ++K+   +KIV  ++ K+K+EKER K  R +      +  ++++  L
Sbjct: 346 EKKREELKKIVEEERLKKKEEKERLKVEREKEREKLREEKRKYVEYL 392


>gi|93204861 protein phosphatase 1, regulatory (inhibitor) subunit 9A
            [Homo sapiens]
          Length = 1098

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 35   GFQLLQIDAEGECQEGEILATGSTAWCSKNVQRKQRHWEK--IVAAKKSKRKQEKERRKA 92
            G QLLQ+D        ++ A G TA   + V +K+    K  +  A+K++ K EK+R K 
Sbjct: 1016 GEQLLQLDGN------KLKALGMTASQDRAVVKKKLKEMKMSLEKARKAQEKMEKQREKL 1069

Query: 93   NRAE 96
             R E
Sbjct: 1070 RRKE 1073


>gi|31657119 carboxypeptidase 2, cytosolic [Homo sapiens]
          Length = 902

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 193 DITEEDCFSLFPLETLVYLTPDSEHALEDVDLNKVYILGGLVDESIQKKVTFQKAREYSV 252
           D+  E  +S   L  +   T  S+ +L D        L  + DE  QKK  F+K ++ S+
Sbjct: 698 DVDLEGSWSDISLSDIESSTSGSDSSLSD---GLPVHLANIADELTQKKKMFKKKKKKSL 754

Query: 253 KTARLPIQEYMVRN 266
           +T +   ++Y  +N
Sbjct: 755 QTRKQRNEQYQKKN 768


>gi|156142178 coiled-coil domain containing 59 [Homo sapiens]
          Length = 241

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 14/93 (15%)

Query: 9   TQKVESPVLQGQEGILEETGEDGLPEGFQLLQIDAEGECQEGEILATGSTAWCSKNV--- 65
           +++V  P+L+ Q  I E   ED         Q   E +C    I    S     KN    
Sbjct: 116 SEQVHQPLLEEQCSIDEPLFEDQC----SFDQPQPEEQC----IKTVNSFTIPKKNKKKT 167

Query: 66  --QRKQRHWEKIVAAKKSKRKQEKERRKANRAE 96
             Q+ Q  +E+I  AK++ +KQE ERRK  R E
Sbjct: 168 SNQKAQEEYEQI-QAKRAAKKQEFERRKQEREE 199


>gi|21687020 ecotropic viral integration site 5-like isoform 2 [Homo
           sapiens]
          Length = 794

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 63/261 (24%), Positives = 106/261 (40%), Gaps = 45/261 (17%)

Query: 11  KVESPVLQGQEGILEETGEDGLPEGFQLLQIDAEGECQEGEILATGSTAWCSKNVQRKQR 70
           +V   +LQ  +  L +   +G+ + FQ +       C +  +L     A+  K   +K +
Sbjct: 306 RVGLALLQVNQAELMQLDMEGMSQYFQRVIPHQFDSCPDKLVLK----AYQVKYNPKKMK 361

Query: 71  HWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRALTKDKLLEAKHSGPRLCID 130
             EK  AA KSK  +E+   K  R EN     +  K+ +  L K ++  A+         
Sbjct: 362 RLEKEYAAMKSKEMEEQIEIKRLRTEN-----RLLKQRIETLEKGQVTRAQE-------- 408

Query: 131 LSMTHYMSKKELSRLAGQIRRLYGSNKKADRPFWICLTGFTTDSPLYE--ECVRMNDGFS 188
            +  +Y+ K+EL+ +  Q        +KA           +T   L E  E  R+ + F 
Sbjct: 409 -AEENYVIKRELAVVRQQCSSAAEDLQKAQ----------STIRQLQEQQENPRLTEDFV 457

Query: 189 SYLLDITEEDCFSLFPLETLVYLTPDSEHALEDVDLNKVYILGGLVDES----IQKKVTF 244
           S+L   TE +   L   ETL  L    +  L+    N       L DE+    +Q+++  
Sbjct: 458 SHL--ETELEQSRLRETETLGALREMQDKVLDMEKRN-----SSLPDENNVAQLQEELKA 510

Query: 245 QKARE----YSVKTARLPIQE 261
            K RE     S +  +L +QE
Sbjct: 511 LKVREGQAVASTRELKLQLQE 531


>gi|5729790 CCCTC-binding factor [Homo sapiens]
          Length = 727

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 11/62 (17%)

Query: 32  LPEGFQLLQIDAEGE---CQEGEILATGSTAWCSKNVQRKQRHWEKIVAAKKSKRKQEKE 88
           LPEGFQ++++ A GE    ++GE+      +W        Q+  +    AKK+K+ ++ +
Sbjct: 160 LPEGFQVVKVGANGEVETLEQGELPPQEDPSW--------QKDPDYQPPAKKTKKTKKSK 211

Query: 89  RR 90
            R
Sbjct: 212 LR 213


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,024,982
Number of Sequences: 37866
Number of extensions: 536214
Number of successful extensions: 2392
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2346
Number of HSP's gapped (non-prelim): 49
length of query: 316
length of database: 18,247,518
effective HSP length: 102
effective length of query: 214
effective length of database: 14,385,186
effective search space: 3078429804
effective search space used: 3078429804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.