Guide to the Human Genome
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Name: HES4 Sequence: fasta or formatted (221aa) NCBI GI: 10863967
Description:

hairy and enhancer of split 4 isoform 2

Referenced in:

Notch Pathway
Helix-Loop-Helix Transcription Factors

Other entries for this name:
alt prot [247aa] hairy and enhancer of split 4 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.8         35           2
 C cysteine            1.4          3           1
 D aspartate           2.7          6           1
 E glutamate           5.0         11           1
 F phenylalanine       1.4          3           1
 G glycine             7.2         16           2
 H histidine           2.3          5           1
 I isoleucine          1.4          3           1
 K lysine              4.5         10           1
 L leucine            13.1         29           2
 M methionine          1.8          4           1
 N asparagine          0.9          2           1
 P proline            12.7         28           2
 Q glutamine           1.8          4           1
 R arginine           11.3         25           3
 S serine              8.1         18           2
 T threonine           2.7          6           1
 V valine              4.1          9           1
 W tryptophan          0.9          2           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hairy and enhancer of split 4 isoform 2 
HES4                  0.966   hairy and enhancer of split 4 isoform 1 
HES1                  0.506   hairy and enhancer of split 1 
HES2                  0.228   hairy and enhancer of split homolog 2 
HES7                  0.173   hairy and enhancer of split 7 
HEYL                  0.163   hairy/enhancer-of-split related with YRPW motif-like ...
HEY1                  0.158   hairy/enhancer-of-split related with YRPW motif 1 i...
HES6                  0.153   hairy and enhancer of split 6 isoform b 
HES6                  0.153   hairy and enhancer of split 6 isoform a 
HEY1                  0.151   hairy/enhancer-of-split related with YRPW motif 1 i...
HEY2                  0.149   hairy/enhancer-of-split related with YRPW motif 2 [Ho...
HES5                  0.132   hairy and enhancer of split 5 
HES3                  0.129   hairy and enhancer of split 3 
BHLHE41               0.091   basic helix-loop-helix domain containing, class B, 3...
BHLHE40               0.084   basic helix-loop-helix family, member e40 
HELT                  0.070   HES/HEY-like transcription factor 
BEST2                 0.036   vitelliform macular dystrophy 2-like 1 
MNT                   0.034   MAX binding protein 
GMIP                  0.034   GEM interacting protein 
PRPF40B               0.034   Huntingtin interacting protein C isoform 2 
PRPF40B               0.034   Huntingtin interacting protein C isoform 1 
SMARCA4               0.031   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.031   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.031   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.031   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.031   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.031   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.031   SWI/SNF-related matrix-associated actin-dependent re...
HOXA4                 0.031   homeobox A4 
DNM1                  0.031   dynamin 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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