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Search of human proteins with 239748738
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748738 PREDICTED: hypothetical protein XP_002346786 [Homo
sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748738 PREDICTED: hypothetical protein XP_002346786 [Homo ... 257 1e-69
gi|239742785 PREDICTED: hypothetical protein XP_002342651 [Homo ... 257 1e-69
gi|239754211 PREDICTED: hypothetical protein XP_002345911 [Homo ... 154 1e-38
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 35 0.010
gi|110735441 ADAM metallopeptidase with thrombospondin type 1 mo... 35 0.013
gi|169166960 PREDICTED: hypothetical protein [Homo sapiens] 35 0.018
gi|169166769 PREDICTED: hypothetical protein [Homo sapiens] 35 0.018
gi|169166416 PREDICTED: hypothetical protein [Homo sapiens] 35 0.018
gi|239753515 PREDICTED: hypothetical protein [Homo sapiens] 34 0.030
gi|239748147 PREDICTED: hypothetical protein XP_002346538 [Homo ... 34 0.030
gi|239742045 PREDICTED: hypothetical protein XP_002342378 [Homo ... 34 0.030
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 34 0.030
gi|55956786 spindle assembly associated Sfi1 homolog isoform a [... 34 0.030
gi|55956784 spindle assembly associated Sfi1 homolog isoform b [... 34 0.030
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 33 0.039
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ... 33 0.039
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 33 0.039
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 33 0.051
gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens] 33 0.051
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 33 0.051
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 33 0.051
gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo s... 33 0.051
gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo... 33 0.051
gi|31542779 tripartite motif family-like 1 [Homo sapiens] 33 0.067
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.067
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 32 0.087
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 32 0.087
gi|239758017 PREDICTED: similar to pseudoautosomal GTP-binding p... 32 0.11
gi|26051273 voltage-gated potassium channel, subfamily H, member... 32 0.15
gi|157266326 oculocutaneous albinism II [Homo sapiens] 32 0.15
>gi|239748738 PREDICTED: hypothetical protein XP_002346786 [Homo
sapiens]
Length = 121
Score = 257 bits (657), Expect = 1e-69
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MQLNAIHSHFGRGYRGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGR 60
MQLNAIHSHFGRGYRGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGR
Sbjct: 1 MQLNAIHSHFGRGYRGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGR 60
Query: 61 VAAGSAHALRPSASWNRRHPRRPSPLGAGSGSRDECPRRRCPALARRLSDHGLSRRRGRQ 120
VAAGSAHALRPSASWNRRHPRRPSPLGAGSGSRDECPRRRCPALARRLSDHGLSRRRGRQ
Sbjct: 61 VAAGSAHALRPSASWNRRHPRRPSPLGAGSGSRDECPRRRCPALARRLSDHGLSRRRGRQ 120
Query: 121 P 121
P
Sbjct: 121 P 121
>gi|239742785 PREDICTED: hypothetical protein XP_002342651 [Homo
sapiens]
Length = 121
Score = 257 bits (657), Expect = 1e-69
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MQLNAIHSHFGRGYRGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGR 60
MQLNAIHSHFGRGYRGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGR
Sbjct: 1 MQLNAIHSHFGRGYRGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGR 60
Query: 61 VAAGSAHALRPSASWNRRHPRRPSPLGAGSGSRDECPRRRCPALARRLSDHGLSRRRGRQ 120
VAAGSAHALRPSASWNRRHPRRPSPLGAGSGSRDECPRRRCPALARRLSDHGLSRRRGRQ
Sbjct: 61 VAAGSAHALRPSASWNRRHPRRPSPLGAGSGSRDECPRRRCPALARRLSDHGLSRRRGRQ 120
Query: 121 P 121
P
Sbjct: 121 P 121
>gi|239754211 PREDICTED: hypothetical protein XP_002345911 [Homo
sapiens]
Length = 131
Score = 154 bits (390), Expect = 1e-38
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 1 MQLNAIHSHFGRGYRGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGR 60
MQLNAIHSHFGRGYRGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGR
Sbjct: 1 MQLNAIHSHFGRGYRGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGR 60
Query: 61 VAAGSAHALRPSA 73
VAAGSAHALRPSA
Sbjct: 61 VAAGSAHALRPSA 73
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 35.4 bits (80), Expect = 0.010
Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 14/118 (11%)
Query: 7 HSHFGRGYRGGRHYPNAAAGPARGTWIPGFSAERSS---RRRNTPRPPSTATMVTGRVAA 63
H G R RH P+ +A P+ P + +S RRR +P PP T + A
Sbjct: 511 HVKNGEVGRRRRHSPSRSASPS-----PRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAP 565
Query: 64 GSAHALRPSASWNRRHPRRPSPLGAGSGSRDECPRRRCPALARRLSDHGLSRRRGRQP 121
P+ RR P P R PRR P + RR S +RR P
Sbjct: 566 PPRRRRTPTPPPRRRTPSPP------PRRRSPSPRRYSPPIQRRYSPSPPPKRRTASP 617
Score = 25.8 bits (55), Expect = 8.2
Identities = 28/84 (33%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 34 PGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSASWNRRHPRRPSPLGAGSGSR 93
P + SR R R PS H R S S++ R RRPSP S R
Sbjct: 276 PRSRSRSKSRSRTRSRSPS-------HTRPRRRHRSR-SRSYSPR--RRPSPRRRPSPRR 325
Query: 94 DECPRRRCPALARRLSDHGLSRRR 117
PRR P R S + RRR
Sbjct: 326 RTPPRRMPPPPRHRRSRSPVRRRR 349
>gi|110735441 ADAM metallopeptidase with thrombospondin type 1 motif,
16 preproprotein [Homo sapiens]
Length = 1224
Score = 35.0 bits (79), Expect = 0.013
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 18 RHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSAS 74
RH P AAAGP+RG+W ++ ++ + S + GR A+G +PSAS
Sbjct: 1116 RHPPFAAAGPSRGSWFASPWSQCTASCGGGVQTRSVQCLAGGRPASGCLLHQKPSAS 1172
>gi|169166960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 34.7 bits (78), Expect = 0.018
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 15 RGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSAS 74
R R P A P R TW P R+ +R +PP T + + A A R +
Sbjct: 124 RSRRSAPTLGARPRRPTWPP-----RAQLKRGDQQPPPTPSPASQPRGARRARTRRRT-- 176
Query: 75 WNRRHPRRPSPLGAGSGSRDE 95
N R S G GSG +DE
Sbjct: 177 -NEESSRLQSQEGDGSGGKDE 196
>gi|169166769 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 34.7 bits (78), Expect = 0.018
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 15 RGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSAS 74
R R P A P R TW P R+ +R +PP T + + A A R +
Sbjct: 124 RSRRSAPTLGARPRRPTWPP-----RAQLKRGDQQPPPTPSPASQPRGARRARTRRRT-- 176
Query: 75 WNRRHPRRPSPLGAGSGSRDE 95
N R S G GSG +DE
Sbjct: 177 -NEESSRLQSQEGDGSGGKDE 196
>gi|169166416 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 34.7 bits (78), Expect = 0.018
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 15 RGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSAS 74
R R P A P R TW P R+ +R +PP T + + A A R +
Sbjct: 124 RSRRSAPTLGARPRRPTWPP-----RAQLKRGDQQPPPTPSPASQPRGARRARTRRRT-- 176
Query: 75 WNRRHPRRPSPLGAGSGSRDE 95
N R S G GSG +DE
Sbjct: 177 -NEESSRLQSQEGDGSGGKDE 196
>gi|239753515 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 33.9 bits (76), Expect = 0.030
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 24 AAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSASWNRRHPRRP 83
A G G+W PG + R+ P S + TG ++ + S + R+ P
Sbjct: 56 ATGTKPGSWEPG-----AVRKGREYMPLSDGLITTGGPSS------KASTTAARKLPGAS 104
Query: 84 SPLGAGSGSRDECPR 98
SP+GAG+ + ECPR
Sbjct: 105 SPIGAGAAASLECPR 119
>gi|239748147 PREDICTED: hypothetical protein XP_002346538 [Homo
sapiens]
Length = 176
Score = 33.9 bits (76), Expect = 0.030
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 24 AAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSASWNRRHPRRP 83
A G G+W PG + R+ P S + TG ++ + S + R+ P
Sbjct: 56 ATGTKPGSWEPG-----AVRKGREYMPLSDGLITTGGPSS------KASTTAARKLPGAS 104
Query: 84 SPLGAGSGSRDECPR 98
SP+GAG+ + ECPR
Sbjct: 105 SPIGAGAAASLECPR 119
>gi|239742045 PREDICTED: hypothetical protein XP_002342378 [Homo
sapiens]
Length = 176
Score = 33.9 bits (76), Expect = 0.030
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 24 AAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSASWNRRHPRRP 83
A G G+W PG + R+ P S + TG ++ + S + R+ P
Sbjct: 56 ATGTKPGSWEPG-----AVRKGREYMPLSDGLITTGGPSS------KASTTAARKLPGAS 104
Query: 84 SPLGAGSGSRDECPR 98
SP+GAG+ + ECPR
Sbjct: 105 SPIGAGAAASLECPR 119
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 33.9 bits (76), Expect = 0.030
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 48 PRPP---STATMVTGRVAAGSAHALRPSASWNRRHPRRP-SPLGAGS-GSRDECP 97
PRP S+A + G A G A A RP S R HP P SP G G+ G D P
Sbjct: 120 PRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGP 174
>gi|55956786 spindle assembly associated Sfi1 homolog isoform a [Homo
sapiens]
Length = 1242
Score = 33.9 bits (76), Expect = 0.030
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 15 RGGRHYPNAAAGPAR-----GTWIPGFSAERSSRRRNTPRPPSTATM-VTGRVAAGSAHA 68
RGG+ P AA P+R G + +A T RP ++ + GR+AA HA
Sbjct: 937 RGGKPQPLAAIAPSRKVTFEGPLLNRIAAGAGDGTLETKRPQASRPLGALGRLAAEEPHA 996
Query: 69 LRPSASWN-RRHPRRP 83
L + + + R+ PRRP
Sbjct: 997 LELNTAHSARKQPRRP 1012
>gi|55956784 spindle assembly associated Sfi1 homolog isoform b
[Homo sapiens]
Length = 1211
Score = 33.9 bits (76), Expect = 0.030
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 15 RGGRHYPNAAAGPAR-----GTWIPGFSAERSSRRRNTPRPPSTATM-VTGRVAAGSAHA 68
RGG+ P AA P+R G + +A T RP ++ + GR+AA HA
Sbjct: 906 RGGKPQPLAAIAPSRKVTFEGPLLNRIAAGAGDGTLETKRPQASRPLGALGRLAAEEPHA 965
Query: 69 LRPSASWN-RRHPRRP 83
L + + + R+ PRRP
Sbjct: 966 LELNTAHSARKQPRRP 981
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 33.5 bits (75), Expect = 0.039
Identities = 39/122 (31%), Positives = 49/122 (40%), Gaps = 19/122 (15%)
Query: 11 GRGYRGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAA-GSAHAL 69
G+G R G +AA R S + S P PPS A + R++A GS H
Sbjct: 116 GQGRRAGARMRSAAPASPRARAARAISNQSSP----PPPPPSRARSRSLRLSAPGSRHDA 171
Query: 70 RPSASWNRRHPRRPSPLGAGSGSRD------ECPRRR---CPAL-ARRLSDHGLSRRRGR 119
++ NR ++ LG G G EC RR C L ARR D G RG
Sbjct: 172 EKASERNRLRRKKRLVLGRGGGGECAHAHEWECARRMRRGCRTLTARRPLDSG----RGL 227
Query: 120 QP 121
P
Sbjct: 228 SP 229
Score = 30.0 bits (66), Expect = 0.43
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 48 PRPPSTATMVTGRVAAGSAHALRPSASWNRRHPRRP---SPLGAGSGSRDEC-PRRRCPA 103
P PP+ ++ RVAAG H L SAS +R R P P G G R R PA
Sbjct: 74 PPPPAAPHVLGARVAAGPTHRL--SASHSRVSSRGPVGTKPKRPGQGRRAGARMRSAAPA 131
Query: 104 LARRLSDHGLSRRRGRQP 121
R + +S + P
Sbjct: 132 SPRARAARAISNQSSPPP 149
>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
sapiens]
Length = 274
Score = 33.5 bits (75), Expect = 0.039
Identities = 39/122 (31%), Positives = 49/122 (40%), Gaps = 19/122 (15%)
Query: 11 GRGYRGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAA-GSAHAL 69
G+G R G +AA R S + S P PPS A + R++A GS H
Sbjct: 116 GQGRRAGARMRSAAPASPRARAARAISNQSSP----PPPPPSRARSRSLRLSAPGSRHDA 171
Query: 70 RPSASWNRRHPRRPSPLGAGSGSRD------ECPRRR---CPAL-ARRLSDHGLSRRRGR 119
++ NR ++ LG G G EC RR C L ARR D G RG
Sbjct: 172 EKASERNRLRRKKRLVLGRGGGGECAHAHEWECARRMRRGCRTLTARRPLDSG----RGL 227
Query: 120 QP 121
P
Sbjct: 228 SP 229
Score = 30.0 bits (66), Expect = 0.43
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 48 PRPPSTATMVTGRVAAGSAHALRPSASWNRRHPRRP---SPLGAGSGSRDEC-PRRRCPA 103
P PP+ ++ RVAAG H L SAS +R R P P G G R R PA
Sbjct: 74 PPPPAAPHVLGARVAAGPTHRL--SASHSRVSSRGPVGTKPKRPGQGRRAGARMRSAAPA 131
Query: 104 LARRLSDHGLSRRRGRQP 121
R + +S + P
Sbjct: 132 SPRARAARAISNQSSPPP 149
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 33.5 bits (75), Expect = 0.039
Identities = 33/94 (35%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 25 AGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSA------HALRPSASWNRR 78
AGP R +I G P PP AT V + ++ SA HA S S R
Sbjct: 803 AGPKRPVFILG-----------EPDPPPAATPVMPKPSSLSADTAALSHARLRSNSIGAR 851
Query: 79 HPRRPSPLGAGSGSRDECPRRRCPALARRLSDHG 112
H P PL AG G R PR P +R S G
Sbjct: 852 HST-PRPLDAGRGRRLGGPRDPAPEKSRASSSGG 884
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 33.1 bits (74), Expect = 0.051
Identities = 29/87 (33%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 12 RGYRGGRHYPNAAA-GPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGS----A 66
RG RGGR A GP R A R+ R P PPS A + G+
Sbjct: 133 RGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPG 192
Query: 67 HALRPSASWNRRHPRRPSPLGAGSGSR 93
P SW RR P GA G R
Sbjct: 193 GPAGPRESWARR--TSSPPRGAAGGGR 217
>gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]
Length = 753
Score = 33.1 bits (74), Expect = 0.051
Identities = 33/112 (29%), Positives = 41/112 (36%), Gaps = 17/112 (15%)
Query: 20 YPNAAAGPARGTWIPGFSAERSSRRRNTPR------------PPSTATMVTGRVAAGSAH 67
+P AA GPARGT G +R +R R R PPS T G A
Sbjct: 232 HPWAAEGPARGTPSVGSLWKRRARGRQLNRPWGRARLALQGAPPSRGTSAATAACTGRAR 291
Query: 68 ALR----PSASW-NRRHPRRPSPLGAGSGSRDECPRRRCPALARRLSDHGLS 114
A R P A W R + +++ R R P L RL G +
Sbjct: 292 AARAVSLPRACWAGPAKVRVLAGYNLQPTIKEDDERERWPTLMERLCSDGFA 343
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 33.1 bits (74), Expect = 0.051
Identities = 29/87 (33%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 12 RGYRGGRHYPNAAA-GPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGS----A 66
RG RGGR A GP R A R+ R P PPS A + G+
Sbjct: 136 RGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPG 195
Query: 67 HALRPSASWNRRHPRRPSPLGAGSGSR 93
P SW RR P GA G R
Sbjct: 196 GPAGPRESWARR--TSSPPRGAAGGGR 220
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 33.1 bits (74), Expect = 0.051
Identities = 29/87 (33%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 12 RGYRGGRHYPNAAA-GPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGS----A 66
RG RGGR A GP R A R+ R P PPS A + G+
Sbjct: 136 RGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPG 195
Query: 67 HALRPSASWNRRHPRRPSPLGAGSGSR 93
P SW RR P GA G R
Sbjct: 196 GPAGPRESWARR--TSSPPRGAAGGGR 220
>gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo
sapiens]
Length = 731
Score = 33.1 bits (74), Expect = 0.051
Identities = 28/110 (25%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 16 GGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSASW 75
G R + +AG + G+ SS ++P PPS A V+ G A A
Sbjct: 3 GSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAVSAAALVSGGVAQAAGSGGLG 62
Query: 76 NRRHPRRPSPLGAGSG--------SRDECPRRRCPALARRLSDHGLSRRR 117
P +P +GSG SR C R + S G R+
Sbjct: 63 GPVRPVLVAPAVSGSGGGAVSTGLSRHSCAARPSAGVGGSSSSLGSGSRK 112
>gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo
sapiens]
Length = 707
Score = 33.1 bits (74), Expect = 0.051
Identities = 28/110 (25%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 16 GGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSASW 75
G R + +AG + G+ SS ++P PPS A V+ G A A
Sbjct: 3 GSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAVSAAALVSGGVAQAAGSGGLG 62
Query: 76 NRRHPRRPSPLGAGSG--------SRDECPRRRCPALARRLSDHGLSRRR 117
P +P +GSG SR C R + S G R+
Sbjct: 63 GPVRPVLVAPAVSGSGGGAVSTGLSRHSCAARPSAGVGGSSSSLGSGSRK 112
>gi|31542779 tripartite motif family-like 1 [Homo sapiens]
Length = 468
Score = 32.7 bits (73), Expect = 0.067
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 14 YRGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSA 73
+ GRHY G + W G + SR+ N P+PP + G + G ++L S+
Sbjct: 336 FTSGRHYWEVEVGN-KTEWEVGICKDSVSRKGNLPKPPGDLFSLIG-LKIGDDYSLWVSS 393
Query: 74 SWNRRHPRRP 83
+H R P
Sbjct: 394 PLKGQHVREP 403
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.7 bits (73), Expect = 0.067
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 21 PNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSASWNRRHP 80
P P+ + P + S RRR+ P + T GR + L+ S S +RR
Sbjct: 1722 PRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREK 1781
Query: 81 RRPSPLGAGSGSRDECPRRRCPALARRLSDHGLSRRR 117
R + SGS RRR R S ++RRR
Sbjct: 1782 TRTTRRRDRSGSSQSTSRRR----QRSRSRSRVTRRR 1814
Score = 30.0 bits (66), Expect = 0.43
Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 11/105 (10%)
Query: 15 RGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSAS 74
R GR G +R PG+S R+++RR R G +H+ P A+
Sbjct: 521 RWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSR----------SARRGRSHSRSP-AT 569
Query: 75 WNRRHPRRPSPLGAGSGSRDECPRRRCPALARRLSDHGLSRRRGR 119
R R P+ G R R RR S RRGR
Sbjct: 570 RGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGR 614
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 32.3 bits (72), Expect = 0.087
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 23 AAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSASWNRRHPRR 82
AA A GTW F A+R ++ R R AG+ HA P+ W+ PRR
Sbjct: 333 AARPRAGGTWTSRFEAQRGCAHQDGQR--------RTRDGAGN-HASEPARVWS-PPPRR 382
Query: 83 PSPLGAGSGSRDECPRRRCP 102
P S E P+RR P
Sbjct: 383 QRPRRLPRASLQEEPKRRPP 402
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 32.3 bits (72), Expect = 0.087
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 23 AAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPSASWNRRHPRR 82
AA A GTW F A+R ++ R R AG+ HA P+ W+ PRR
Sbjct: 333 AARPRAGGTWTSRFEAQRGCAHQDGQR--------RTRDGAGN-HASEPARVWS-PPPRR 382
Query: 83 PSPLGAGSGSRDECPRRRCP 102
P S E P+RR P
Sbjct: 383 QRPRRLPRASLQEEPKRRPP 402
>gi|239758017 PREDICTED: similar to pseudoautosomal GTP-binding
protein-like protein [Homo sapiens]
Length = 411
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 44 RRNTPRPPSTA-TMVTGRVAAGSAHALRPSASWNRRHPRRPS 84
RR P PPS A + TGRV A + + R W+ PR P+
Sbjct: 65 RRRDPVPPSRALSHGTGRVGAAAGESSRAPRCWSGSRPRAPA 106
>gi|26051273 voltage-gated potassium channel, subfamily H, member 2
isoform c [Homo sapiens]
Length = 819
Score = 31.6 bits (70), Expect = 0.15
Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 35 GFSAER----SSRRR---NTPRPPSTATMVTGRVAAGSAHALRPSASWNRRHPRRPSPLG 87
GFS +R S RRR +T +P + + GR AG + RP W PS
Sbjct: 540 GFSRQRKRKLSFRRRTDKDTEQPGEVSALGPGRAGAGPSSRGRPGGPWGESPSSGPS--- 596
Query: 88 AGSGSRDECPRRRCPALARRLSDHGLSRRRGRQP 121
+ S DE P R L RL R G P
Sbjct: 597 SPESSEDEGPGRSSSPL--RLVPFSSPRPPGEPP 628
>gi|157266326 oculocutaneous albinism II [Homo sapiens]
Length = 838
Score = 31.6 bits (70), Expect = 0.15
Identities = 33/104 (31%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Query: 15 RGGRHYPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTA--TMVTGRVAAGS---AHAL 69
R GR YP A A T +P AE + +R PR A + R AAG A A
Sbjct: 6 RDGRRYPGAPAVELLQTSVPSGLAELVAGKRRLPRGAGGADPSHSCPRGAAGQSSWAPAG 65
Query: 70 RPSASWNRRHPRRPS-PLGAGSGSRDECPRRRCPALARRLSDHG 112
+ AS+ + S P + S S+D C P L L + G
Sbjct: 66 QEFASFLTKGRSHSSLPQMSSSRSKDSCFTENTPLLRNSLQEKG 109
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,029,493
Number of Sequences: 37866
Number of extensions: 328540
Number of successful extensions: 1835
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 188
Number of HSP's that attempted gapping in prelim test: 1657
Number of HSP's gapped (non-prelim): 366
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.