Guide to the Human Genome
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Name: LOC100291579 Sequence: fasta or formatted (131aa) NCBI GI: 239754211
Description:

PREDICTED: hypothetical protein XP_002345911

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.8         22           3
 C cysteine            1.5          2           1
 D aspartate           0.8          1           1
 E glutamate           2.3          3           1
 F phenylalanine       3.1          4           1
 G glycine             9.9         13           2
 H histidine           3.8          5           1
 I isoleucine          1.5          2           1
 K lysine              0.8          1           1
 L leucine             3.8          5           1
 M methionine          2.3          3           1
 N asparagine          3.1          4           1
 P proline            19.1         25           2
 Q glutamine           0.8          1           1
 R arginine           11.5         15           3
 S serine              8.4         11           2
 T threonine           5.3          7           1
 V valine              3.1          4           1
 W tryptophan          0.8          1           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345911 
LOC100290140          0.506   PREDICTED: hypothetical protein XP_002346786 
LOC100288414          0.506   PREDICTED: hypothetical protein XP_002342651 
LOC729370             0.086   PREDICTED: hypothetical protein 
TAF4                  0.075   TBP-associated factor 4 
KNDC1                 0.071   kinase non-catalytic C-lobe domain (KIND) containin...
LOC100289408          0.067   PREDICTED: hypothetical protein 
LOC100289408          0.067   PREDICTED: hypothetical protein XP_002344217 
LOC646509             0.067   PREDICTED: hypothetical protein 
USP31                 0.063   ubiquitin specific peptidase 31 
MUC7                  0.063   mucin 7, secreted precursor 
LOC388279             0.063   PREDICTED: hypothetical protein 
MUC7                  0.063   mucin 7, secreted precursor 
MUC7                  0.063   mucin 7, secreted precursor 
RXRB                  0.059   retinoid X receptor, beta 
WIPF3                 0.059   WAS/WASL interacting protein family, member 3 [Homo...
DAAM1                 0.059   dishevelled-associated activator of morphogenesis 1 ...
ACR                   0.059   acrosin precursor 
CASKIN2               0.055   cask-interacting protein 2 isoform b 
CASKIN2               0.055   cask-interacting protein 2 isoform a 
PRR12                 0.055   proline rich 12 
TBC1D10B              0.055   TBC1 domain family, member 10B 
SCARF2                0.055   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.055   scavenger receptor class F, member 2 isoform 2 [Homo...
RICH2                 0.055   Rho GTPase-activating protein RICH2 
HOXD8                 0.051   homeobox D8 
MUC2                  0.051   mucin 2 precursor 
GLTSCR1               0.051   glioma tumor suppressor candidate region gene 1 [Ho...
ZFPM1                 0.051   zinc finger protein, multitype 1 
SAMD1                 0.051   sterile alpha motif domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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