Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239748149
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748149 PREDICTED: hypothetical protein [Homo sapiens]
(84 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748149 PREDICTED: hypothetical protein [Homo sapiens] 171 1e-43
gi|239742047 PREDICTED: hypothetical protein XP_002342399 [Homo ... 171 1e-43
gi|65506328 protein phosphatase 1J (PP2C domain containing) [Hom... 35 0.017
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens] 33 0.063
gi|7662010 zinc finger protein 516 [Homo sapiens] 33 0.063
gi|239752280 PREDICTED: similar to family with sequence similari... 32 0.083
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 32 0.083
gi|210032463 family with sequence similarity 48, member B2 [Homo... 32 0.083
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|236459851 ubinuclein 2 [Homo sapiens] 31 0.18
gi|239749627 PREDICTED: hypothetical protein XP_002347107 [Homo ... 31 0.18
gi|239743902 PREDICTED: hypothetical protein XP_002342970 [Homo ... 31 0.18
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa... 30 0.32
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 30 0.41
gi|169209173 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 30 0.41
gi|113425821 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 30 0.41
gi|113425445 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 30 0.41
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo ... 30 0.54
gi|169171626 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|169162512 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
>gi|239748149 PREDICTED: hypothetical protein [Homo sapiens]
Length = 84
Score = 171 bits (432), Expect = 1e-43
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MSGRAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVE 60
MSGRAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVE
Sbjct: 1 MSGRAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVE 60
Query: 61 GVLGAEPQRSLARSPPRFSELFLA 84
GVLGAEPQRSLARSPPRFSELFLA
Sbjct: 61 GVLGAEPQRSLARSPPRFSELFLA 84
>gi|239742047 PREDICTED: hypothetical protein XP_002342399 [Homo
sapiens]
Length = 84
Score = 171 bits (432), Expect = 1e-43
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MSGRAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVE 60
MSGRAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVE
Sbjct: 1 MSGRAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVE 60
Query: 61 GVLGAEPQRSLARSPPRFSELFLA 84
GVLGAEPQRSLARSPPRFSELFLA
Sbjct: 61 GVLGAEPQRSLARSPPRFSELFLA 84
>gi|65506328 protein phosphatase 1J (PP2C domain containing) [Homo
sapiens]
Length = 505
Score = 34.7 bits (78), Expect = 0.017
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 2 SGRAPPRRNQQPH-----SAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRV 56
SG APP R + P SAP AA APR+ PA G + A+ +P++
Sbjct: 15 SGGAPPPRPKSPDLPNAASAPPAAAPEAPRSPPAKAGSGSATPAKAVEARASFSRPTFLQ 74
Query: 57 VCVEGVLGAEPQRSLA-RSPP 76
+ G+ A+ A +SPP
Sbjct: 75 LSPGGLRRADDHAGRAVQSPP 95
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 33.1 bits (74), Expect = 0.049
Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 4 RAPPRRNQQPHSAPTMAASAAPRAAPALGGQER-GHLGAPAHSAAAGL--QPSYRVVCVE 60
RAP R QQ H AP AA+AA A G R G GAP+H G + S R V
Sbjct: 894 RAPCR--QQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAPSHRHRPGARGRRSRRRAAVA 951
Query: 61 GVLGAEPQRS 70
GA P R+
Sbjct: 952 LAGGAHPARA 961
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 33.1 bits (74), Expect = 0.049
Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 4 RAPPRRNQQPHSAPTMAASAAPRAAPALGGQER-GHLGAPAHSAAAGL--QPSYRVVCVE 60
RAP R QQ H AP AA+AA A G R G GAP+H G + S R V
Sbjct: 894 RAPCR--QQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAPSHRHRPGARGRRSRRRAAVA 951
Query: 61 GVLGAEPQRS 70
GA P R+
Sbjct: 952 LAGGAHPARA 961
>gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens]
Length = 882
Score = 32.7 bits (73), Expect = 0.063
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 2 SGRAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAH--SAAAGLQPSY--RVV 57
S +A R+ SAP + +S+ PRAA +G AP S++AG P+ R
Sbjct: 391 SSQAASHRHSMEISAPVLISSSDPRAAARIGDLAHLSCAAPTQDVSSSAGSTPTAVPRAA 450
Query: 58 CVEGVLGAEPQRSL 71
V G G P+ L
Sbjct: 451 SVSGEQGTPPKVQL 464
>gi|7662010 zinc finger protein 516 [Homo sapiens]
Length = 1163
Score = 32.7 bits (73), Expect = 0.063
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 7 PRRNQQPHSA--------PTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPS 53
P Q+PH A P AS+ P AP GG R P A AG QPS
Sbjct: 890 PCHGQEPHGAATQGPLAKPRQEASSKPVPAPGGGGFSRSATPTPTVIARAGAQPS 944
>gi|239752280 PREDICTED: similar to family with sequence similarity
48, member B2 [Homo sapiens]
Length = 779
Score = 32.3 bits (72), Expect = 0.083
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 7 PRRNQQPHSAPTMAASA-----APRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVEG 61
P + P +AP +AA+A AP AAPAL A +AA G PS+
Sbjct: 450 PLKRPFPAAAPAVAAAAPAPAPAPAAAPALAA-------AAVAAAAGGAAPSHSQKPSVP 502
Query: 62 VLGAEPQRSLARSPPRFSEL 81
++ A +R A P RF ++
Sbjct: 503 LIKASRRRPAAGRPTRFVKI 522
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 32.3 bits (72), Expect = 0.083
Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 3 GRAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVEGV 62
G APP R +Q HS P P APA GH PA G +P
Sbjct: 296 GSAPPERQEQRHSLP----HPYPYPAPAYTAHPPGHRLVPAAPPGPGPRPP--------- 342
Query: 63 LGAEPQRSLARSPPRFSEL 81
GAE L + P S+L
Sbjct: 343 -GAESHGCLPATRPPGSDL 360
>gi|210032463 family with sequence similarity 48, member B2 [Homo
sapiens]
Length = 817
Score = 32.3 bits (72), Expect = 0.083
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 7 PRRNQQPHSAPTMAASA-----APRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVEG 61
P + P +AP +AA+A AP AAPAL A +AA G PS+
Sbjct: 488 PLKRPFPAAAPAVAAAAPAPAPAPAAAPALAA-------AAVAAAAGGAAPSHSQKPSVP 540
Query: 62 VLGAEPQRSLARSPPRFSEL 81
++ A +R A P RF ++
Sbjct: 541 LIKASRRRPAAGRPTRFVKI 560
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 13 PHSAPTMAASAAPRA--APALGGQERGHLGAPAHSAAAGLQPSYRVVCVEGVLGAEPQRS 70
P + P A APRA A G + RG PA +A P R++ V A S
Sbjct: 217 PSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQPPLARLLLASAVSLA---AS 273
Query: 71 LARSPP 76
LARSPP
Sbjct: 274 LARSPP 279
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 13 PHSAPTMAASAAPRA--APALGGQERGHLGAPAHSAAAGLQPSYRVVCVEGVLGAEPQRS 70
P + P A APRA A G + RG PA +A P R++ V A S
Sbjct: 217 PSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQPPLARLLLASAVSLA---AS 273
Query: 71 LARSPP 76
LARSPP
Sbjct: 274 LARSPP 279
>gi|236459851 ubinuclein 2 [Homo sapiens]
Length = 1347
Score = 31.2 bits (69), Expect = 0.18
Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 14/74 (18%)
Query: 4 RAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVEGVL 63
R PPR QP+ P A APR PA + A + + V
Sbjct: 33 REPPRLEPQPYREPARAEPPAPR--------------EPAPRSDAQPPSREKPLPQREVS 78
Query: 64 GAEPQRSLARSPPR 77
AEP SL R PPR
Sbjct: 79 RAEPPMSLQREPPR 92
>gi|239749627 PREDICTED: hypothetical protein XP_002347107 [Homo
sapiens]
Length = 115
Score = 31.2 bits (69), Expect = 0.18
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 6 PPRRNQQPHSAPTMAASAAPRAAPALGG-QERGHLGAPAHSAAAGL-QPSYRVVCVEGVL 63
PP R+++ HS P ++A P+LGG +ERG A+GL + S RV L
Sbjct: 42 PPYRDRRSHSPPALSAPRRSGRWPSLGGLRERGR--RRLDWRASGLRERSPRV-----TL 94
Query: 64 GAEPQRSLARSP 75
G P R+ A SP
Sbjct: 95 GEAPPRAAAWSP 106
>gi|239743902 PREDICTED: hypothetical protein XP_002342970 [Homo
sapiens]
Length = 115
Score = 31.2 bits (69), Expect = 0.18
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 6 PPRRNQQPHSAPTMAASAAPRAAPALGG-QERGHLGAPAHSAAAGL-QPSYRVVCVEGVL 63
PP R+++ HS P ++A P+LGG +ERG A+GL + S RV L
Sbjct: 42 PPYRDRRSHSPPALSAPRRSGRWPSLGGLRERGR--RRLDWRASGLRERSPRV-----TL 94
Query: 64 GAEPQRSLARSP 75
G P R+ A SP
Sbjct: 95 GEAPPRAAAWSP 106
>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
sapiens]
Length = 2113
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 1 MSGRAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRV 56
M+G PRR ++P P+ + AP+ GG ER G A + A P R+
Sbjct: 1 MTGAGEPRR-EEPPPQPSAGLRSRESGAPSAGGWERAERGRGAAARPATGPPPRRI 55
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 2 SGRAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVEG 61
+G APP P PT AP AAP E G P H+ G + S + G
Sbjct: 2041 AGTAPPAPGPTPAEPPT-----APSAAPPAPSTEPPRAGGP-HTKMGGSRDSLLEMSTSG 2094
Query: 62 VLGAEPQRSLARS 74
V ++ Q + A S
Sbjct: 2095 VGRSQKQGAGAYS 2107
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 3 GRAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVEGV 62
GRAP R + T AAPRAAPA G G PA + AAG + + +G
Sbjct: 99 GRAPERVGGRGRGRGT----AAPRAAPAARGSRPG----PAGTMAAGSITTLPALPEDGG 150
Query: 63 LGAEP 67
GA P
Sbjct: 151 SGAFP 155
>gi|169209173 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 3 GRAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVEGV 62
G P R+ P SA ++AA A PA GG APA AA L+ R G
Sbjct: 88 GSDPGRQTGHPSSALLPRSAAAAAANPAAGG------AAPARQPAASLRSLRRASRASGA 141
Query: 63 L 63
L
Sbjct: 142 L 142
>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 2 SGRAPPRRNQQPHSAPTMAASAAP---RAAP---ALGGQERGHLGAPAHSAAA 48
S RA P R AP ++ +P RAAP +LG + R H G PA +AAA
Sbjct: 29 SQRADPARRP---GAPWVSPGCSPESLRAAPLPGSLGARSRSHSGPPATAAAA 78
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 6 PPRRNQQPHSAPTMAASAAPR-------AAPALGGQERGHLGAPAHSAAAGLQPSYRVVC 58
PPR +Q + A+ PR A+PA + AP +A+ G P R
Sbjct: 107 PPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQG 166
Query: 59 VEGVLGAEPQRSLARSPP 76
+ V GA P R+ + PP
Sbjct: 167 SDQV-GARPSRAGGQPPP 183
>gi|113425821 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 3 GRAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVEGV 62
G P R+ P SA ++AA A PA GG APA AA L+ R G
Sbjct: 57 GSDPGRQTGHPSSALLPRSAAAAAANPAAGG------AAPARQPAASLRSLRRASRASGA 110
Query: 63 L 63
L
Sbjct: 111 L 111
>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 2 SGRAPPRRNQQPHSAPTMAASAAP---RAAP---ALGGQERGHLGAPAHSAAA 48
S RA P R AP ++ +P RAAP +LG + R H G PA +AAA
Sbjct: 29 SQRADPARRP---GAPWVSPGCSPESLRAAPLPGSLGARSRSHSGPPATAAAA 78
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 6 PPRRNQQPHSAPTMAASAAPR-------AAPALGGQERGHLGAPAHSAAAGLQPSYRVVC 58
PPR +Q + A+ PR A+PA + AP +A+ G P R
Sbjct: 107 PPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQG 166
Query: 59 VEGVLGAEPQRSLARSPP 76
+ V GA P R+ + PP
Sbjct: 167 SDQV-GARPSRAGGQPPP 183
>gi|113425445 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 3 GRAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVEGV 62
G P R+ P SA ++AA A PA GG APA AA L+ R G
Sbjct: 57 GSDPGRQTGHPSSALLPRSAAAAAANPAAGG------AAPARQPAASLRSLRRASRASGA 110
Query: 63 L 63
L
Sbjct: 111 L 111
>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 2 SGRAPPRRNQQPHSAPTMAASAAP---RAAP---ALGGQERGHLGAPAHSAAA 48
S RA P R AP ++ +P RAAP +LG + R H G PA +AAA
Sbjct: 29 SQRADPARRP---GAPWVSPGCSPESLRAAPLPGSLGARSRSHSGPPATAAAA 78
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 6 PPRRNQQPHSAPTMAASAAPR-------AAPALGGQERGHLGAPAHSAAAGLQPSYRVVC 58
PPR +Q + A+ PR A+PA + AP +A+ G P R
Sbjct: 107 PPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQG 166
Query: 59 VEGVLGAEPQRSLARSPP 76
+ V GA P R+ + PP
Sbjct: 167 SDQV-GARPSRAGGQPPP 183
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 6 PPRRNQQPHSAPTMAASAAPR-------AAPALGGQERGHLGAPAHSAAAGLQPSYRVVC 58
PPR +Q + A+ PR A+PA + AP +A+ G P R
Sbjct: 107 PPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQG 166
Query: 59 VEGVLGAEPQRSLARSPP 76
+ V GA P R+ + PP
Sbjct: 167 SDQV-GARPSRAGGQPPP 183
>gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo
sapiens]
Length = 300
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/51 (39%), Positives = 24/51 (47%)
Query: 4 RAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSY 54
RAP R +A T AA A PRA A G A +AAG+QP +
Sbjct: 238 RAPAARVVGGEAAATAAARARPRAPLAAGSPVPVRPQDAAARSAAGMQPGH 288
>gi|169171626 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 29.3 bits (64), Expect = 0.70
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 2 SGRAPPRRNQQPHSAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVEG 61
+ R PPR PH+ P+ +S A+P + + P + + PS C+
Sbjct: 5 ASRQPPRARLLPHAGPSRPSSCLAAASPGPAPAQPDGVSQP-KAPFLNVGPSGPSSCLPL 63
Query: 62 VLGAEPQRSLARSPPRFSEL 81
+ A P + ARS PR ++L
Sbjct: 64 MACAGPPEA-ARSRPRQAQL 82
>gi|169162512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 29.3 bits (64), Expect = 0.70
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 16/81 (19%)
Query: 3 GRAPPRRNQQPH--SAPTMAASAAPRAAPALGGQERGHLGAPAHSAAAGLQPSYRVVCVE 60
GR P +P +AP AA AAPR G A A + + S+R +
Sbjct: 49 GRRAPTHPTRPAGTTAPAAAAGAAPR-------------GGAAPRARSAARRSWRAGLEQ 95
Query: 61 G-VLGAEPQRSLARSPPRFSE 80
G G P RS A+ P R ++
Sbjct: 96 GRAAGTPPSRSYAQRPERVAK 116
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.129 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,075,956
Number of Sequences: 37866
Number of extensions: 192913
Number of successful extensions: 1718
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 1570
Number of HSP's gapped (non-prelim): 241
length of query: 84
length of database: 18,247,518
effective HSP length: 56
effective length of query: 28
effective length of database: 16,127,022
effective search space: 451556616
effective search space used: 451556616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.