Guide to the Human Genome
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Name: LOC100289334 Sequence: fasta or formatted (84aa) NCBI GI: 239748149
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {84aa} PREDICTED: hypothetical protein XP_002342399
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            20.2         17           3
 C cysteine            1.2          1           1
 D aspartate           0.0          0           0
 E glutamate           4.8          4           1
 F phenylalanine       2.4          2           1
 G glycine             9.5          8           2
 H histidine           3.6          3           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             8.3          7           1
 M methionine          2.4          2           1
 N asparagine          1.2          1           1
 P proline            13.1         11           2
 Q glutamine           6.0          5           2
 R arginine           10.7          9           2
 S serine              9.5          8           1
 T threonine           1.2          1           1
 V valine              4.8          4           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289334          1.000   PREDICTED: hypothetical protein XP_002342399 
PPM1J                 0.068   protein phosphatase 1J (PP2C domain containing) [Hom...
LOC728767             0.055   PREDICTED: hypothetical protein 
LOC728767             0.055   PREDICTED: hypothetical protein 
SH3RF3                0.055   SH3 domain containing ring finger 3 
ZNF516                0.055   zinc finger protein 516 
LOC100294444          0.048   PREDICTED: similar to family with sequence similari...
KDM6B                 0.048   lysine (K)-specific demethylase 6B 
FAM48B2               0.048   family with sequence similarity 48, member B2 [Homo...
LOC643355             0.048   PREDICTED: hypothetical protein 
LOC643355             0.048   PREDICTED: hypothetical protein 
UBN2                  0.041   ubinuclein 2 
LOC100291458          0.041   PREDICTED: hypothetical protein XP_002347107 
LOC100288099          0.041   PREDICTED: hypothetical protein XP_002342970 
DSCAML1               0.034   Down syndrome cell adhesion molecule like 1 
FGF2                  0.034   fibroblast growth factor 2 
LOC400456             0.034   PREDICTED: hypothetical protein 
LOC100132891          0.034   PREDICTED: hypothetical protein 
LOC100291634          0.034   PREDICTED: hypothetical protein XP_002346062 
LOC400456             0.034   PREDICTED: hypothetical protein 
LOC100132891          0.034   PREDICTED: hypothetical protein 
LOC100291096          0.034   PREDICTED: hypothetical protein XP_002346952 
LOC400456             0.034   PREDICTED: hypothetical protein 
LOC100132891          0.034   PREDICTED: hypothetical protein 
LOC100287232          0.034   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.034   PREDICTED: hypothetical protein 
LOC100287250          0.034   PREDICTED: hypothetical protein XP_002344493 
LOC644794             0.027   PREDICTED: hypothetical protein 
LOC100129101          0.027   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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