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Search of human proteins with 239748046
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748046 PREDICTED: hypothetical protein XP_002346501 [Homo
sapiens]
(411 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748046 PREDICTED: hypothetical protein XP_002346501 [Homo ... 873 0.0
gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo ... 45 2e-04
gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo ... 45 2e-04
gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo ... 45 2e-04
gi|117306178 hypothetical protein LOC55731 [Homo sapiens] 39 0.011
gi|117306174 hypothetical protein LOC55731 [Homo sapiens] 39 0.011
gi|5454102 transforming, acidic coiled-coil containing protein 3... 38 0.019
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 37 0.043
gi|239743072 PREDICTED: hypothetical protein [Homo sapiens] 35 0.095
gi|239508718 PREDICTED: hypothetical protein [Homo sapiens] 35 0.095
gi|38569471 MUF1 protein [Homo sapiens] 35 0.095
gi|50843827 activating molecule in beclin-1-regulated autophagy ... 34 0.21
gi|222080092 WD repeat domain 91 [Homo sapiens] 34 0.28
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 34 0.28
gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2... 34 0.28
gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1... 34 0.28
gi|20270245 GLI-Kruppel family member GLI4 [Homo sapiens] 34 0.28
gi|155723000 mixed lineage kinase 4 [Homo sapiens] 33 0.36
gi|208022661 hypothetical protein LOC57701 [Homo sapiens] 33 0.47
gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo ... 33 0.61
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 33 0.61
gi|239753382 PREDICTED: hypothetical protein [Homo sapiens] 33 0.61
gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo ... 33 0.61
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 33 0.61
gi|239747949 PREDICTED: hypothetical protein XP_002346484 [Homo ... 33 0.61
gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo ... 33 0.61
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 33 0.61
gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo ... 33 0.61
gi|239741844 PREDICTED: hypothetical protein XP_002342324 [Homo ... 33 0.61
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 33 0.61
>gi|239748046 PREDICTED: hypothetical protein XP_002346501 [Homo
sapiens]
Length = 411
Score = 873 bits (2255), Expect = 0.0
Identities = 411/411 (100%), Positives = 411/411 (100%)
Query: 1 MGNRVVHQACPQGGPVPEKQMHKAEGHRSWAFLCGSLATAPQHLRATAGEANEPCSRPEP 60
MGNRVVHQACPQGGPVPEKQMHKAEGHRSWAFLCGSLATAPQHLRATAGEANEPCSRPEP
Sbjct: 1 MGNRVVHQACPQGGPVPEKQMHKAEGHRSWAFLCGSLATAPQHLRATAGEANEPCSRPEP 60
Query: 61 EFLGTAACTQSGASLLRAESPQLFQLQPGQGHLQIECAGPLRTHVLRWPFFLGWDPRVQV 120
EFLGTAACTQSGASLLRAESPQLFQLQPGQGHLQIECAGPLRTHVLRWPFFLGWDPRVQV
Sbjct: 61 EFLGTAACTQSGASLLRAESPQLFQLQPGQGHLQIECAGPLRTHVLRWPFFLGWDPRVQV 120
Query: 121 RASVPGPFTGGSGESRCSGPLHLGLRKKRENTEITGEGTQAGRVAGCPKAQLQAQESPSP 180
RASVPGPFTGGSGESRCSGPLHLGLRKKRENTEITGEGTQAGRVAGCPKAQLQAQESPSP
Sbjct: 121 RASVPGPFTGGSGESRCSGPLHLGLRKKRENTEITGEGTQAGRVAGCPKAQLQAQESPSP 180
Query: 181 LTPSGGPGSAEERGLGGLRGLECSRLGWGGGRCVRVLRASCVGPRGPGCGHCQVGSSSLW 240
LTPSGGPGSAEERGLGGLRGLECSRLGWGGGRCVRVLRASCVGPRGPGCGHCQVGSSSLW
Sbjct: 181 LTPSGGPGSAEERGLGGLRGLECSRLGWGGGRCVRVLRASCVGPRGPGCGHCQVGSSSLW 240
Query: 241 QQHEEGSLQEAAEAAECSHQPVGAEARVCADHTLEDISAHPSAASPQPGCQGLAHELPQA 300
QQHEEGSLQEAAEAAECSHQPVGAEARVCADHTLEDISAHPSAASPQPGCQGLAHELPQA
Sbjct: 241 QQHEEGSLQEAAEAAECSHQPVGAEARVCADHTLEDISAHPSAASPQPGCQGLAHELPQA 300
Query: 301 VHEGVDHGRLGLPHTVHGQPRGHRIQGHHLAPLNPSLNSQLSWPLADSSPFPATPTSKVP 360
VHEGVDHGRLGLPHTVHGQPRGHRIQGHHLAPLNPSLNSQLSWPLADSSPFPATPTSKVP
Sbjct: 301 VHEGVDHGRLGLPHTVHGQPRGHRIQGHHLAPLNPSLNSQLSWPLADSSPFPATPTSKVP 360
Query: 361 LSLVGCAHPAQPLLYPLHFPSTWGCSSFKGTAMRGAEPDVSTACGLRDNLF 411
LSLVGCAHPAQPLLYPLHFPSTWGCSSFKGTAMRGAEPDVSTACGLRDNLF
Sbjct: 361 LSLVGCAHPAQPLLYPLHFPSTWGCSSFKGTAMRGAEPDVSTACGLRDNLF 411
>gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 44.7 bits (104), Expect = 2e-04
Identities = 58/200 (29%), Positives = 76/200 (38%), Gaps = 29/200 (14%)
Query: 112 LGWDPRVQVRASVPGPFTGGSGESRCSGPLHLGLRKKRENTEITGEGTQAG-RVAGCPKA 170
L WD V + G + GG G R G L R++ G G G R A
Sbjct: 76 LSWDRNYLV---ITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGF 132
Query: 171 QLQAQESPSPLTPSGGPGSAEERGLGGLRGLECSR--LGWGGGRCVRVLRASCVGPRGPG 228
+L A + P P GGP GL G R L S G G C L C P P
Sbjct: 133 ELLAWQHPQK--PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGL--CCAHPVRP- 187
Query: 229 CGHCQVGSSSLWQQHEEGSLQEAAEAAECSHQPVGAEARVCADHTLEDISAHP------- 281
GH G + +W + + G + A AA + Q G ++ + +S HP
Sbjct: 188 AGHVACG-AGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWV---PCQPLSQHPTGPEPSS 243
Query: 282 ------SAASPQPGCQGLAH 295
+AASP+P C G H
Sbjct: 244 RPHALSTAASPRP-CWGAGH 262
>gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 44.7 bits (104), Expect = 2e-04
Identities = 58/200 (29%), Positives = 76/200 (38%), Gaps = 29/200 (14%)
Query: 112 LGWDPRVQVRASVPGPFTGGSGESRCSGPLHLGLRKKRENTEITGEGTQAG-RVAGCPKA 170
L WD V + G + GG G R G L R++ G G G R A
Sbjct: 76 LSWDRNYLV---ITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGF 132
Query: 171 QLQAQESPSPLTPSGGPGSAEERGLGGLRGLECSR--LGWGGGRCVRVLRASCVGPRGPG 228
+L A + P P GGP GL G R L S G G C L C P P
Sbjct: 133 ELLAWQHPQK--PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGL--CCAHPVRP- 187
Query: 229 CGHCQVGSSSLWQQHEEGSLQEAAEAAECSHQPVGAEARVCADHTLEDISAHP------- 281
GH G + +W + + G + A AA + Q G ++ + +S HP
Sbjct: 188 AGHLACG-AGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWV---PCQPLSQHPTGPEPSS 243
Query: 282 ------SAASPQPGCQGLAH 295
+AASP+P C G H
Sbjct: 244 RPHALSTAASPRP-CWGAGH 262
>gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 44.7 bits (104), Expect = 2e-04
Identities = 58/200 (29%), Positives = 76/200 (38%), Gaps = 29/200 (14%)
Query: 112 LGWDPRVQVRASVPGPFTGGSGESRCSGPLHLGLRKKRENTEITGEGTQAG-RVAGCPKA 170
L WD V + G + GG G R G L R++ G G G R A
Sbjct: 76 LSWDRNYLV---ITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGF 132
Query: 171 QLQAQESPSPLTPSGGPGSAEERGLGGLRGLECSR--LGWGGGRCVRVLRASCVGPRGPG 228
+L A + P P GGP GL G R L S G G C L C P P
Sbjct: 133 ELLAWQHPQK--PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGL--CCAHPVRP- 187
Query: 229 CGHCQVGSSSLWQQHEEGSLQEAAEAAECSHQPVGAEARVCADHTLEDISAHP------- 281
GH G + +W + + G + A AA + Q G ++ + +S HP
Sbjct: 188 AGHVACG-AGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWV---PCQPLSQHPTGPEPSS 243
Query: 282 ------SAASPQPGCQGLAH 295
+AASP+P C G H
Sbjct: 244 RPHALSTAASPRP-CWGAGH 262
>gi|117306178 hypothetical protein LOC55731 [Homo sapiens]
Length = 562
Score = 38.5 bits (88), Expect = 0.011
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 279 AHPSAASPQPGCQGLAHELPQAVHEGVDHGRLGLPHTVHGQPRGHRIQGHHLAPLNPSLN 338
+HP + QP QGL H P A +G+ VH Q H+ H P NP L+
Sbjct: 185 SHPQSLQ-QP--QGLGHPQPMAQTQGL----------VHPQALAHQGLQH---PHNPLLH 228
Query: 339 SQLSWPLADSSPFPATPTSKVPLSLVGCAHPAQP 372
P +D+ P TS +PLS+ +QP
Sbjct: 229 GGRKMPDSDAPPNVTVSTSTIPLSMAATLQHSQP 262
>gi|117306174 hypothetical protein LOC55731 [Homo sapiens]
Length = 562
Score = 38.5 bits (88), Expect = 0.011
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 279 AHPSAASPQPGCQGLAHELPQAVHEGVDHGRLGLPHTVHGQPRGHRIQGHHLAPLNPSLN 338
+HP + QP QGL H P A +G+ VH Q H+ H P NP L+
Sbjct: 185 SHPQSLQ-QP--QGLGHPQPMAQTQGL----------VHPQALAHQGLQH---PHNPLLH 228
Query: 339 SQLSWPLADSSPFPATPTSKVPLSLVGCAHPAQP 372
P +D+ P TS +PLS+ +QP
Sbjct: 229 GGRKMPDSDAPPNVTVSTSTIPLSMAATLQHSQP 262
>gi|5454102 transforming, acidic coiled-coil containing protein 3
[Homo sapiens]
Length = 838
Score = 37.7 bits (86), Expect = 0.019
Identities = 51/196 (26%), Positives = 69/196 (35%), Gaps = 34/196 (17%)
Query: 182 TPSGGPGSAEERGLGGLRGLECSRLGWGGGRCVRVLRASCVGPRGPGCGHCQVGSSSLWQ 241
+P+ G GS+ E G G L L+CS + PG Q+ S
Sbjct: 133 SPAFGSGSSSESGPGALADLDCSS-----------------SSQSPGSSENQMVSPG--- 172
Query: 242 QHEEGSLQEAAEAAECSHQPVGAEARVC-ADHTLED---ISAHPSAASPQPGCQGLAHEL 297
GS ++A E S+ + RV A TLED + A +P + E
Sbjct: 173 -KVSGSPEQAVEENLSSY---SLDRRVTPASETLEDPCRTESQHKAETPHGAEEECKAET 228
Query: 298 PQAVHEGVDHGRLGLPHTVHGQPRGH-RIQGHHLAPLNPSLNSQLSWPLADSSPFPATPT 356
P E HG + P V P G + APL L P +P PA T
Sbjct: 229 PHGAEEECRHGGVCAPAAVATSPPGAIPKEACGGAPLQGLPGEALGCPAGVGTPVPADGT 288
Query: 357 SKVPLSLVGCAHPAQP 372
+ CAH + P
Sbjct: 289 QTLT-----CAHTSAP 299
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 36.6 bits (83), Expect = 0.043
Identities = 52/196 (26%), Positives = 73/196 (37%), Gaps = 28/196 (14%)
Query: 141 LHLGLRKKRENTEI--TGEGTQAGRVAGCPKAQLQAQESPSPLTPSGGPGSAEERGLGGL 198
LH GLR++++ G G + GR ++ Q + +G PG GG
Sbjct: 681 LHRGLRRRQKELRHHGRGRGRRGGRRGRAVGLEVPLQVGVAHEDLAGLPGLGGRGRGGGT 740
Query: 199 RGLECSRLGWGGGRCVRVLRASCVGPRGPGCGHCQVGSSSLWQQH-----EEGSLQEAAE 253
RG GG VR L VG G G G + L + H + G+L+EA
Sbjct: 741 RG---------GGGAVRALVQQQVGGVGEGLGAERAAEGPLARVHALVLPQVGALREALP 791
Query: 254 AAECSHQPV-GAEARVC--ADHTLEDISA-HPSAASPQPGC--------QGLAHELPQAV 301
A P+ G V A LE + A + +P C + L Q+
Sbjct: 792 ADSTGVGPLAGVHVAVAPQAGRVLEGLGAVRARMKARRPVCTLRWICSREERLKALGQSG 851
Query: 302 HEGVDHGRLGLPHTVH 317
H D R LPH+ H
Sbjct: 852 HWSRDDHRNDLPHSPH 867
>gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 35.4 bits (80), Expect = 0.095
Identities = 67/244 (27%), Positives = 85/244 (34%), Gaps = 35/244 (14%)
Query: 160 QAGRVAGCPKAQLQAQESPSPLTPSGGPGSAEERGLGGLRGLECSRLGWGGGRCVRVLRA 219
Q G + G AQL+ G PG E LGGL G R GW GR + R
Sbjct: 463 QHGHLRGGEVAQLEGFPFMLRAGGRGAPGLQAEE-LGGLLGC---RTGWAAGRTLAGPRV 518
Query: 220 SC-----------VGPRGPGCGHCQVGSSSLWQQHEEGSLQEAAEAAECSHQPVGAEARV 268
G RG CG + G A+A +P GA R
Sbjct: 519 RLGLEQLLGRHVGAGVRGGACGPHRGGIRGGRPLERADDRVLLAQALGPVQRPRGAGGR- 577
Query: 269 CADHTLEDISAHPSAASPQPGCQGLAHEL--PQAVHEGVDHGRLGLPHTVHGQPRGHRIQ 326
L+D S A PG L +L P+A+ EG+ G P + G G +
Sbjct: 578 -----LQD-PWPASLALAGPGIARLGCDLDGPRALVEGLHGRHEGGP--LGGAGGGGSGE 629
Query: 327 GHHLAPLNPSLNSQLSWPLADSSPFPATPTSKVP---LSLVGCAHPAQPLLYPLHFPSTW 383
G P S++S + +P S P S P P PLH ST
Sbjct: 630 GQGRGP-----GSRVSVRRSSRAPSSCRAASLAPPRPASATSAGSPTSPAP-PLHMVSTD 683
Query: 384 GCSS 387
GCS+
Sbjct: 684 GCSA 687
>gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 35.4 bits (80), Expect = 0.095
Identities = 67/244 (27%), Positives = 85/244 (34%), Gaps = 35/244 (14%)
Query: 160 QAGRVAGCPKAQLQAQESPSPLTPSGGPGSAEERGLGGLRGLECSRLGWGGGRCVRVLRA 219
Q G + G AQL+ G PG E LGGL G R GW GR + R
Sbjct: 463 QHGHLRGGEVAQLEGFPFMLRAGGRGAPGLQAEE-LGGLLGC---RTGWAAGRTLAGPRV 518
Query: 220 SC-----------VGPRGPGCGHCQVGSSSLWQQHEEGSLQEAAEAAECSHQPVGAEARV 268
G RG CG + G A+A +P GA R
Sbjct: 519 RLGLEQLLGRHVGAGVRGGACGPHRGGIRGGRPLERADDRVLLAQALGPVQRPRGAGGR- 577
Query: 269 CADHTLEDISAHPSAASPQPGCQGLAHEL--PQAVHEGVDHGRLGLPHTVHGQPRGHRIQ 326
L+D S A PG L +L P+A+ EG+ G P + G G +
Sbjct: 578 -----LQD-PWPASLALAGPGIARLGCDLDGPRALVEGLHGRHEGGP--LGGAGGGGSGE 629
Query: 327 GHHLAPLNPSLNSQLSWPLADSSPFPATPTSKVP---LSLVGCAHPAQPLLYPLHFPSTW 383
G P S++S + +P S P S P P PLH ST
Sbjct: 630 GQGRGP-----GSRVSVRRSSRAPSSCRAASLAPPRPASATSAGSPTSPAP-PLHMVSTD 683
Query: 384 GCSS 387
GCS+
Sbjct: 684 GCSA 687
>gi|38569471 MUF1 protein [Homo sapiens]
Length = 812
Score = 35.4 bits (80), Expect = 0.095
Identities = 34/138 (24%), Positives = 46/138 (33%), Gaps = 11/138 (7%)
Query: 223 GPRGPGCGHCQVGSSSLWQQHEEGSLQEAAEAAECSHQPVGAEARVCADHTLEDISAHPS 282
GP GP C C S +EGSL S +P A CA + S S
Sbjct: 257 GPGGPPCRLCGEASRGRAPSRDEGSLLLG------SRRPRRDAAERCAAALM--ASRRKS 308
Query: 283 AASPQPGCQGLAHELPQAVHEGVDHGRLGLPHTVHGQPRGHRIQGHHLAPLNPSLNSQLS 342
A P ++ E + G L +H H G +P P+ S S
Sbjct: 309 EAKQMPRAAPATRVTRRSTQESLTAGGTDLKRELHPPATSHEAPGTKRSPSAPAATSSAS 368
Query: 343 WPLADSSPFPATPTSKVP 360
+ +S + P S P
Sbjct: 369 ---SSTSSYKRAPASSAP 383
>gi|50843827 activating molecule in beclin-1-regulated autophagy [Homo
sapiens]
Length = 1208
Score = 34.3 bits (77), Expect = 0.21
Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 11/157 (7%)
Query: 143 LGLRKKRENTEITGEGTQAGRVAGCPKAQLQAQ-ESPSPLTPSGGPGSAE--ERGLGGLR 199
+GL+ + T +T +GTQ + A+ Q + E P P T + GPG E E G G
Sbjct: 998 IGLQPRNPATSVTSQGTQTLALQ-LQNAETQTEREVPEPGTAASGPGEGEGSEYGASGED 1056
Query: 200 GL-ECSRLGWGGGRCVRVLR--ASCVGPRGPGCGHCQVGSSSLWQQHEEGSLQEAAEAAE 256
L RL GG V R ++ + G G G+ + S + + + G+ E A
Sbjct: 1057 ALSRIQRLMAEGGMTAVVQREQSTTMASMG-GFGNNIIVSHRIHRSSQTGT--EPGAAHT 1113
Query: 257 CSHQPVGAEARVCADHTLEDISAHPSAAS-PQPGCQG 292
S QP + + L + P AS QPG G
Sbjct: 1114 SSPQPSTSRGLLPEAGQLAERGLSPRTASWDQPGTPG 1150
>gi|222080092 WD repeat domain 91 [Homo sapiens]
Length = 747
Score = 33.9 bits (76), Expect = 0.28
Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 30/166 (18%)
Query: 159 TQAGRVAGCPKAQLQAQESPSPLTPSGGP----GSAEERGLGGLRGLECSRLGWGGGRCV 214
+Q+ RV Q+++SPS L+P+ GP SA++ GG +G + G
Sbjct: 254 SQSPRVGFLSSLLPQSKKSPSRLSPAQGPPQPQSSAKKESFGG-QGTKGKDPTSGAKDGK 312
Query: 215 RVLRASCVGPRGPGCGHCQVGSSSLWQQHEEGSLQE------------AAEAAECSHQPV 262
+L G G W QH + LQ+ ++ AE +
Sbjct: 313 SLLSGLATGESG-------------WSQHRQRRLQDHGKERKELFSTTTSQCAEKKPEAS 359
Query: 263 GAEARVCADHTLEDISAHPSAASPQPGCQGLAHELPQAVHEGVDHG 308
G EA C + E + A+S P G+ E P V ++G
Sbjct: 360 GPEAEPCPELHTEPVEPLTRASSAGPEGGGVRPEQPFIVLGQEEYG 405
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 33.9 bits (76), Expect = 0.28
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 207 GWGGGRCVRVLRASCVGPRGPGCGHCQVGSSSLWQQHEEGSLQEAAEAAECSHQPVGAEA 266
G+ G RC P PG G C+ + + + E GS+ + EA C + VG
Sbjct: 845 GYTGRRCESCAPGYEGNPIQPG-GKCRPVNQEIVRCDERGSMGTSGEACRCKNNVVGRLC 903
Query: 267 RVCADHTLEDISAHPSAASPQPGC 290
CAD S H S +P GC
Sbjct: 904 NECADG-----SFHLSTRNPD-GC 921
>gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2
[Homo sapiens]
Length = 994
Score = 33.9 bits (76), Expect = 0.28
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 180 PLTPSGGPGSAEERGLGGLRGLECSRLGWGGGRCVRVLRASCVGPRGPGCGHCQVGSSSL 239
P + GG G G GG RG G GGGR G RG GH + +
Sbjct: 15 PRSSGGGYGGGPAGGHGGNRGSGGGGGGGGGGR----------GGRGRHPGHLKGREIGM 64
Query: 240 WQQHEEGSLQEAAEAAE 256
W ++G + AE E
Sbjct: 65 WYAKKQGQKNKEAERQE 81
>gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1
[Homo sapiens]
Length = 1008
Score = 33.9 bits (76), Expect = 0.28
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 180 PLTPSGGPGSAEERGLGGLRGLECSRLGWGGGRCVRVLRASCVGPRGPGCGHCQVGSSSL 239
P + GG G G GG RG G GGGR G RG GH + +
Sbjct: 15 PRSSGGGYGGGPAGGHGGNRGSGGGGGGGGGGR----------GGRGRHPGHLKGREIGM 64
Query: 240 WQQHEEGSLQEAAEAAE 256
W ++G + AE E
Sbjct: 65 WYAKKQGQKNKEAERQE 81
>gi|20270245 GLI-Kruppel family member GLI4 [Homo sapiens]
Length = 376
Score = 33.9 bits (76), Expect = 0.28
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 274 LEDISAHPSAASP----QPGCQGLAHELPQAVHEGVDHGRLGLPHTVHGQPRGHRIQGHH 329
L DI PS SP PG G H PQ G HG G V QP +Q
Sbjct: 4 LGDIQESPSVPSPVSLSSPGTPGTQHHEPQLHLHGHQHGSPGSSPKVLSQPSDLDLQDVE 63
Query: 330 LAPLNPSLNSQLSWPLADSSP--FPATPTSKVP 360
+ WP ++ P P +P S+ P
Sbjct: 64 ----EVEIGRDTFWPDSEPKPEQAPRSPGSQAP 92
>gi|155723000 mixed lineage kinase 4 [Homo sapiens]
Length = 1036
Score = 33.5 bits (75), Expect = 0.36
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 4 RVVHQACPQGGPVPEKQMHKAEGHRSWAFLCGSLATAPQHLRATAGEANEPCSRPEPEFL 63
R +H+A P+P+++ K EG A A+ P L +T GEA+ P S P L
Sbjct: 740 RELHKAQAAEEPLPKEEKKKREGIFQRASKSRRSASPPTSLPSTCGEASSPPSLPLSSAL 799
Query: 64 G 64
G
Sbjct: 800 G 800
>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
Length = 1334
Score = 33.1 bits (74), Expect = 0.47
Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 175 QESPSPLTPSG--GPGSAE-----ERGLGGLRGLECSRLGWGGGRCVRVLRASCVGPRGP 227
Q PSP P GPG+ ER LGGL G E + WG R + + GP
Sbjct: 234 QPEPSPWAPCLLLGPGNLGGLLHWERLLGGLGGEEDTGRPWGPSRGPPQAQGTSSGP--- 290
Query: 228 GCGHCQVGSSSLWQQHEEGSLQEA 251
+C GSSS E G EA
Sbjct: 291 ---NCAPGSSSSSSSDEAGDPNEA 311
>gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo
sapiens]
Length = 582
Score = 32.7 bits (73), Expect = 0.61
Identities = 31/110 (28%), Positives = 39/110 (35%), Gaps = 7/110 (6%)
Query: 156 GEGTQAGRVAGCPKAQLQAQESPSPLTPSGGPGSAE-ERGLGGLRGLECSRLGWGGGRCV 214
G G Q G+ GCP L P P G P S E E G + + G
Sbjct: 141 GHGEQQGQCPGCPTGHLHPAR-PLNRRPPGRPESQEAEVGTESCQEQDAGIHGQQDDGGQ 199
Query: 215 RVLRASCVGP-RGPGCGHCQVGSSSLWQQHEEGSLQEAAEAAECSHQPVG 263
R + P G GHCQ G QQ G +++ +H P G
Sbjct: 200 RPTAHCTIRPVASTGNGHCQDGQRQTAQQIRHGQVEQPGG----THPPAG 245
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 32.7 bits (73), Expect = 0.61
Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 121 RASVPGPFTGGSGESRCSGPLHLGLRKKRENTEITGEGTQAGRVAGCPKAQLQAQESPSP 180
R S P TGGS CSGP + T A AG P A A+ P
Sbjct: 295 RLSPPRADTGGSSSGGCSGP------DSKHRTLPAPPAPTAWPAAGAPGAPNPAESRRGP 348
Query: 181 LTPSGGPGSAEERGLGGLRGLECSRLG 207
G P +E + EC R G
Sbjct: 349 GPAQGPPSRRDEPRRVVIAARECGREG 375
>gi|239753382 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 32.7 bits (73), Expect = 0.61
Identities = 29/101 (28%), Positives = 38/101 (37%), Gaps = 21/101 (20%)
Query: 15 PVPEKQMHKAEGHRSWAFLCGSLATAPQHLRATAGEANEPCSRPEPEFLGTAACTQSGAS 74
P Q + GH S L T HL T + P +RP+ + AAC Q+
Sbjct: 38 PCDVDQCFPSPGHFSNQCSLSPLFTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQA--- 94
Query: 75 LLRAESPQL----------------FQLQPGQGHLQIECAG 99
R SP+L QL+PG G +Q C G
Sbjct: 95 --RGGSPKLPEQPCRGRGACWRLGGRQLRPGGGKVQSSCQG 133
>gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo
sapiens]
Length = 589
Score = 32.7 bits (73), Expect = 0.61
Identities = 31/110 (28%), Positives = 39/110 (35%), Gaps = 7/110 (6%)
Query: 156 GEGTQAGRVAGCPKAQLQAQESPSPLTPSGGPGSAE-ERGLGGLRGLECSRLGWGGGRCV 214
G G Q G+ GCP L P P G P S E E G + + G
Sbjct: 148 GHGEQQGQCPGCPTGHLHPAR-PLNRRPPGRPESQEAEVGTESCQEQDAGIHGQQDDGGQ 206
Query: 215 RVLRASCVGP-RGPGCGHCQVGSSSLWQQHEEGSLQEAAEAAECSHQPVG 263
R + P G GHCQ G QQ G +++ +H P G
Sbjct: 207 RPTAHCTIRPVASTGNGHCQDGQRQTAQQIRHGQVEQPGG----THPPAG 252
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 32.7 bits (73), Expect = 0.61
Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 121 RASVPGPFTGGSGESRCSGPLHLGLRKKRENTEITGEGTQAGRVAGCPKAQLQAQESPSP 180
R S P TGGS CSGP + T A AG P A A+ P
Sbjct: 295 RLSPPRADTGGSSSGGCSGP------DSKHRTLPAPPAPTAWPAAGAPGAPNPAESRRGP 348
Query: 181 LTPSGGPGSAEERGLGGLRGLECSRLG 207
G P +E + EC R G
Sbjct: 349 GPAQGPPSRRDEPRRVVIAARECGREG 375
>gi|239747949 PREDICTED: hypothetical protein XP_002346484 [Homo
sapiens]
Length = 331
Score = 32.7 bits (73), Expect = 0.61
Identities = 29/101 (28%), Positives = 38/101 (37%), Gaps = 21/101 (20%)
Query: 15 PVPEKQMHKAEGHRSWAFLCGSLATAPQHLRATAGEANEPCSRPEPEFLGTAACTQSGAS 74
P Q + GH S L T HL T + P +RP+ + AAC Q+
Sbjct: 38 PCDVDQCFPSPGHFSNQCSLSPLFTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQA--- 94
Query: 75 LLRAESPQL----------------FQLQPGQGHLQIECAG 99
R SP+L QL+PG G +Q C G
Sbjct: 95 --RGGSPKLPEQPCRGRGACWRLGGRQLRPGGGKVQSSCQG 133
>gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo
sapiens]
Length = 329
Score = 32.7 bits (73), Expect = 0.61
Identities = 31/110 (28%), Positives = 39/110 (35%), Gaps = 7/110 (6%)
Query: 156 GEGTQAGRVAGCPKAQLQAQESPSPLTPSGGPGSAE-ERGLGGLRGLECSRLGWGGGRCV 214
G G Q G+ GCP L P P G P S E E G + + G
Sbjct: 148 GHGEQQGQCPGCPTGHLHPAR-PLNRRPPGRPESQEAEVGTESCQEQDAGIHGQQDDGGQ 206
Query: 215 RVLRASCVGP-RGPGCGHCQVGSSSLWQQHEEGSLQEAAEAAECSHQPVG 263
R + P G GHCQ G QQ G +++ +H P G
Sbjct: 207 RPTAHCTIRPVASTGNGHCQDGQRQTAQQIRHGQVEQPGG----THPPAG 252
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 32.7 bits (73), Expect = 0.61
Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 121 RASVPGPFTGGSGESRCSGPLHLGLRKKRENTEITGEGTQAGRVAGCPKAQLQAQESPSP 180
R S P TGGS CSGP + T A AG P A A+ P
Sbjct: 295 RLSPPRADTGGSSSGGCSGP------DSKHRTLPAPPAPTAWPAAGAPGAPNPAESRRGP 348
Query: 181 LTPSGGPGSAEERGLGGLRGLECSRLG 207
G P +E + EC R G
Sbjct: 349 GPAQGPPSRRDEPRRVVIAARECGREG 375
>gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo
sapiens]
Length = 756
Score = 32.7 bits (73), Expect = 0.61
Identities = 46/151 (30%), Positives = 56/151 (37%), Gaps = 24/151 (15%)
Query: 122 ASVPGPFTGGSGESRCSGPLHLGLRKKRENTEITGEGTQAGRVAGCPKAQLQAQESPSPL 181
+S+ G GGSG R P E EG GR P+ L
Sbjct: 596 SSLSGGPGGGSGVGRWQLPGRAAAEDVAEAAAKVLEGAGPGR----PRR--------GQL 643
Query: 182 TPSGGPGSAEERGLGG-LRGLECSRLGWGGGRCVRVL---RASCVGPRGPGCGHCQVGSS 237
+ G G A G G LRG LGWG CV V+ R R C C +S
Sbjct: 644 LRAAGLGQARGGGAGAWLRGR--LGLGWGPTACVPVVAARRPDTSSARSGACCGCSRANS 701
Query: 238 SLWQQHEEGSLQEAAEA--AECSHQPVGAEA 266
W+ S + AA A ++ S QP GA A
Sbjct: 702 QYWR----ASSRAAATACNSQNSLQPRGAAA 728
>gi|239741844 PREDICTED: hypothetical protein XP_002342324 [Homo
sapiens]
Length = 331
Score = 32.7 bits (73), Expect = 0.61
Identities = 29/101 (28%), Positives = 38/101 (37%), Gaps = 21/101 (20%)
Query: 15 PVPEKQMHKAEGHRSWAFLCGSLATAPQHLRATAGEANEPCSRPEPEFLGTAACTQSGAS 74
P Q + GH S L T HL T + P +RP+ + AAC Q+
Sbjct: 38 PCDVDQCFPSPGHFSNQCSLSPLFTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQA--- 94
Query: 75 LLRAESPQL----------------FQLQPGQGHLQIECAG 99
R SP+L QL+PG G +Q C G
Sbjct: 95 --RGGSPKLPEQPCRGRGACWRLGGRQLRPGGGKVQSSCQG 133
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 32.7 bits (73), Expect = 0.61
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 167 CPKAQLQAQESPSPLTPSGGPGSAEERGLGGLRGLECSRLGWGGGRCVRV---LRASCV- 222
CP A++S L PSG G ERGL G G + + G G CVR+ C
Sbjct: 316 CPPCVHGARDSNVTLAPSGPKGGKGERGLPGPPGSKGEK-GARGNDCVRISPDAPLQCAE 374
Query: 223 GPRGPGCGHCQVGSSSL 239
GP+G +G S L
Sbjct: 375 GPKGEKGESGALGPSGL 391
Score = 32.0 bits (71), Expect = 1.0
Identities = 35/112 (31%), Positives = 44/112 (39%), Gaps = 31/112 (27%)
Query: 130 GGSGESRCSGPLHLGLRKKRENTEITGEGTQAGRVAGCPKAQLQAQESPS-------PLT 182
GG GE GP E G R++ P A LQ E P L
Sbjct: 337 GGKGERGLPGP-------PGSKGEKGARGNDCVRIS--PDAPLQCAEGPKGEKGESGALG 387
Query: 183 PSGGPGSAEERGL------GGLRGL--ECSRLGWGGGRCVRVLRASCVGPRG 226
PSG PGS E+G GG++G+ + R G G CV +GP+G
Sbjct: 388 PSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEICV-------IGPKG 432
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,262,251
Number of Sequences: 37866
Number of extensions: 1230973
Number of successful extensions: 5302
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 4929
Number of HSP's gapped (non-prelim): 471
length of query: 411
length of database: 18,247,518
effective HSP length: 105
effective length of query: 306
effective length of database: 14,271,588
effective search space: 4367105928
effective search space used: 4367105928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.