Guide to the Human Genome
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Name: LOC100131316 Sequence: fasta or formatted (225aa) NCBI GI: 239747902
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {225aa} PREDICTED: hypothetical protein
alt mRNA {225aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         15           2
 C cysteine            1.3          3           1
 D aspartate           3.1          7           1
 E glutamate           5.3         12           2
 F phenylalanine       4.4         10           1
 G glycine             7.6         17           1
 H histidine           3.6          8           2
 I isoleucine          1.8          4           1
 K lysine              5.8         13           1
 L leucine            12.4         28           3
 M methionine          1.3          3           1
 N asparagine          1.3          3           1
 P proline            11.6         26           2
 Q glutamine           4.4         10           1
 R arginine            7.6         17           2
 S serine              7.6         17           2
 T threonine           5.8         13           2
 V valine              4.9         11           1
 W tryptophan          1.8          4           1
 Y tyrosine            1.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131316          1.000   PREDICTED: hypothetical protein 
LOC100131316          1.000   PREDICTED: hypothetical protein 
LOC100288524          0.027   PREDICTED: hypothetical protein XP_002342748 
WBP11                 0.018   WW domain binding protein 11 
LOC100291220          0.018   PREDICTED: hypothetical protein XP_002347633 
LOC100287224          0.018   PREDICTED: hypothetical protein XP_002343483 
RGL2                  0.016   ral guanine nucleotide dissociation stimulator-like 2...
DGKZ                  0.016   diacylglycerol kinase zeta isoform 4 
DGKZ                  0.016   diacylglycerol kinase zeta isoform 1 
DGKZ                  0.016   diacylglycerol kinase zeta isoform 2 
DGKZ                  0.016   diacylglycerol kinase zeta isoform 3 
LOC100290946          0.016   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.016   PREDICTED: hypothetical protein XP_002344246 
IRS2                  0.016   insulin receptor substrate 2 
LOC100290731          0.014   PREDICTED: hypothetical protein XP_002347247 
KCNQ3                 0.014   potassium voltage-gated channel KQT-like protein 3 [H...
SPTBN4                0.014   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
SEC16A                0.014   SEC16 homolog A 
LOC651986             0.014   PREDICTED: similar to forkhead box L2 
PKP4                  0.011   plakophilin 4 isoform b 
PKP4                  0.011   plakophilin 4 isoform a 
ANKLE1                0.011   ankyrin repeat domain 41 
C19orf26              0.011   downstream of Stk11 
NRXN2                 0.011   neurexin 2 isoform beta precursor 
MLL5                  0.011   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.011   myeloid/lymphoid or mixed-lineage leukemia 5 
COL12A1               0.011   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.011   collagen, type XII, alpha 1 long isoform precursor [...
COL4A4                0.011   alpha 4 type IV collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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