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Search of human proteins with 239747111
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747111 PREDICTED: hypothetical protein XP_002343913 [Homo
sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747120 PREDICTED: hypothetical protein XP_002343918 [Homo ... 306 5e-84
gi|239747111 PREDICTED: hypothetical protein XP_002343913 [Homo ... 306 5e-84
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 41 4e-04
gi|148612825 Rap GTPase interactor [Homo sapiens] 36 0.009
gi|145309328 papilin [Homo sapiens] 34 0.034
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ... 34 0.044
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ... 34 0.044
gi|169166139 PREDICTED: similar to predicted protein [Homo sapiens] 33 0.057
gi|169165130 PREDICTED: hypothetical protein [Homo sapiens] 33 0.057
gi|4506525 rhomboid protease 1 [Homo sapiens] 33 0.075
gi|239753433 PREDICTED: hypothetical protein XP_002345652 [Homo ... 33 0.098
gi|239757099 PREDICTED: hypothetical protein [Homo sapiens] 32 0.13
gi|25282391 nurim [Homo sapiens] 31 0.28
gi|119226260 calcium homeostasis endoplasmic reticulum protein [... 31 0.28
gi|49619239 variable charge, X-linked 2 [Homo sapiens] 31 0.28
gi|157168329 formin 1 [Homo sapiens] 31 0.37
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 30 0.48
gi|40353727 synaptopodin isoform A [Homo sapiens] 30 0.48
gi|66932943 variable charge, X chromosome [Homo sapiens] 30 0.48
gi|4827022 contactin 2 precursor [Homo sapiens] 30 0.63
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho... 30 0.63
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho... 30 0.63
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho... 30 0.63
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom... 30 0.63
gi|45580719 osteoclast-associated receptor isoform 1 [Homo sapiens] 30 0.63
gi|212549561 ataxin 1-like [Homo sapiens] 30 0.63
gi|14916427 naked cuticle homolog 2 [Homo sapiens] 30 0.63
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 30 0.83
gi|78499633 phospholipase C, eta 2 [Homo sapiens] 30 0.83
gi|239750954 PREDICTED: hypothetical protein XP_002347616 [Homo ... 30 0.83
>gi|239747120 PREDICTED: hypothetical protein XP_002343918 [Homo
sapiens]
Length = 139
Score = 306 bits (783), Expect = 5e-84
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPSG 60
MAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPSG
Sbjct: 1 MAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPSG 60
Query: 61 PGLWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPWRPGLRHSRTPQ 120
PGLWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPWRPGLRHSRTPQ
Sbjct: 61 PGLWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPWRPGLRHSRTPQ 120
Query: 121 HRVLLHRRTLAGLRPGLSY 139
HRVLLHRRTLAGLRPGLSY
Sbjct: 121 HRVLLHRRTLAGLRPGLSY 139
>gi|239747111 PREDICTED: hypothetical protein XP_002343913 [Homo
sapiens]
Length = 139
Score = 306 bits (783), Expect = 5e-84
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPSG 60
MAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPSG
Sbjct: 1 MAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPSG 60
Query: 61 PGLWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPWRPGLRHSRTPQ 120
PGLWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPWRPGLRHSRTPQ
Sbjct: 61 PGLWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPWRPGLRHSRTPQ 120
Query: 121 HRVLLHRRTLAGLRPGLSY 139
HRVLLHRRTLAGLRPGLSY
Sbjct: 121 HRVLLHRRTLAGLRPGLSY 139
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 40.8 bits (94), Expect = 4e-04
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 31 PAPRILDYGSRGPSLPASWTKAPEDPAPSGPGLWQQRTQPLASWTMAPEDPASLRHGLWH 90
PAP +R P A+ AP P P+ PG QR PLA+ AP P ++
Sbjct: 137 PAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGP 196
Query: 91 QRTQPLAPWTMAAEDPAPWRP 111
+R P P A E P P P
Sbjct: 197 RRAPP--PAVAAREPPLPPPP 215
Score = 31.2 bits (69), Expect = 0.28
Identities = 25/86 (29%), Positives = 31/86 (36%)
Query: 2 APEDPASLRHGLWHQRTQPLAPWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPSGP 61
AP P + G QR PLA A P G R PA + P P P P
Sbjct: 158 APPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQP 217
Query: 62 GLWQQRTQPLASWTMAPEDPASLRHG 87
Q+ QP P + ++R G
Sbjct: 218 PAPPQQQQPPPPQPQPPPEGGAVRAG 243
Score = 28.5 bits (62), Expect = 1.8
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 8 SLRHGLWHQRTQPLAPWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPSGP---GLW 64
S + + ++ + P A PAP G+ + A+ P P P P
Sbjct: 86 SYKGSISYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAP 145
Query: 65 QQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPWRP 111
+ + A+ AP P + G QR PL AA PAP P
Sbjct: 146 ARAPRAAAAAATAPPSPGPAQPGPRAQRAAPL-----AAPPPAPAAP 187
>gi|148612825 Rap GTPase interactor [Homo sapiens]
Length = 1075
Score = 36.2 bits (82), Expect = 0.009
Identities = 42/144 (29%), Positives = 56/144 (38%), Gaps = 22/144 (15%)
Query: 9 LRHGLWHQRTQ-----PLAPWTMAAEDPAPR-----ILDYGSRGPSLPASWTKAPEDPAP 58
+RH LW R++ P P + A++ P +LD PS P AP DP P
Sbjct: 803 VRHFLWGLRSRASPGSPGRPGSGASQPVCPEGMHHVVLDGHLEAPSCPL----APRDPGP 858
Query: 59 SGPGLWQQRTQPL--ASWTMAPEDPASLRHGLW----HQRTQPLAPWTMAAEDPAPWRPG 112
+ + +RT PL A W AP R G H + L P P P
Sbjct: 859 AAREVAPERTLPLRGAPWAQAPPGRQPSRGGSQAGPPHTDSSCLLTPPSTPLGPEPGDPD 918
Query: 113 LRHSRTPQHRVLLHRRT--LAGLR 134
S P + L R+ L+GLR
Sbjct: 919 WPESGGPCGKALPERQRNGLSGLR 942
>gi|145309328 papilin [Homo sapiens]
Length = 1251
Score = 34.3 bits (77), Expect = 0.034
Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 39 GSRGPSLPASWTKAPEDPAPSGPGLWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAP 98
G + PS + P PSG GLW+Q QP E P + G W P
Sbjct: 807 GEQEPSQHRTGAAVQRKPWPSG-GLWRQDQQPGPG-----EAPHTQAFGEW--------P 852
Query: 99 WTMAAEDPAPWRPGLRHSRTPQHRVLLHRRTLAGLRPGL 137
W AP G S P +R +LAG+ P L
Sbjct: 853 WGQELGSRAPGLGGDAGSPAPPFHSSSYRISLAGVEPSL 891
>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
sapiens]
Length = 208
Score = 33.9 bits (76), Expect = 0.044
Identities = 37/128 (28%), Positives = 48/128 (37%), Gaps = 12/128 (9%)
Query: 6 PASLRHGLWHQRTQPLAPW----TMAAEDPAPRILDYGSRGPSLPASWTKAPEDP-APSG 60
PA H R P +P T A APR L R PS P AP P S
Sbjct: 81 PAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPPLGKSE 140
Query: 61 PGLWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPWRPGLRHSRTPQ 120
PG + T ++ P A+LR L QP +P ++A W G R R+ +
Sbjct: 141 PG--EPETSGPRAYLRDPGASAALRQVLATGPAQPTSPRLVSA-----WSRGARRERSSR 193
Query: 121 HRVLLHRR 128
+ R
Sbjct: 194 GGIFARPR 201
>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
sapiens]
Length = 208
Score = 33.9 bits (76), Expect = 0.044
Identities = 37/128 (28%), Positives = 48/128 (37%), Gaps = 12/128 (9%)
Query: 6 PASLRHGLWHQRTQPLAPW----TMAAEDPAPRILDYGSRGPSLPASWTKAPEDP-APSG 60
PA H R P +P T A APR L R PS P AP P S
Sbjct: 81 PAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPPLGKSE 140
Query: 61 PGLWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPWRPGLRHSRTPQ 120
PG + T ++ P A+LR L QP +P ++A W G R R+ +
Sbjct: 141 PG--EPETSGPRAYLRDPGASAALRQVLATGPAQPTSPRLVSA-----WSRGARRERSSR 193
Query: 121 HRVLLHRR 128
+ R
Sbjct: 194 GGIFARPR 201
>gi|169166139 PREDICTED: similar to predicted protein [Homo sapiens]
Length = 1022
Score = 33.5 bits (75), Expect = 0.057
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 49 WTKAPEDPAPSGPGLWQ-QRTQPLASWTMAPEDPASLRHGLWHQR 92
WT+AP+D APS G + R +P+ W P + R WHQR
Sbjct: 319 WTRAPKDKAPSSGGFYNLHRAEPVQVW--YKHRPVNQR---WHQR 358
>gi|169165130 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1002
Score = 33.5 bits (75), Expect = 0.057
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 49 WTKAPEDPAPSGPGLWQ-QRTQPLASWTMAPEDPASLRHGLWHQR 92
WT+AP+D APS G + R +P+ W P + R WHQR
Sbjct: 299 WTRAPKDKAPSSGGFYNLHRAEPVQVW--YKHRPVNQR---WHQR 338
>gi|4506525 rhomboid protease 1 [Homo sapiens]
Length = 438
Score = 33.1 bits (74), Expect = 0.075
Identities = 30/97 (30%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 18 TQPLAPWTMAAED-PAPRIL----DYGSRGPSLPASWTKAPEDPAPSGPGLWQQ---RTQ 69
T+ L W PAP I + GP W P+ P+ GP LW + RTQ
Sbjct: 10 TEELEDWDPGTSALPAPGIKQGPREQTGTGPLSQKCWEPEPDAPSQPGPALWSRGRARTQ 69
Query: 70 PLASWTMAPE-DP-------ASLRHGLWHQRTQPLAP 98
LA + + DP A GL H PL P
Sbjct: 70 ALAGGSSLQQLDPENTGFIGADTFTGLVHSHELPLDP 106
>gi|239753433 PREDICTED: hypothetical protein XP_002345652 [Homo
sapiens]
Length = 302
Score = 32.7 bits (73), Expect = 0.098
Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 16/96 (16%)
Query: 57 APSGPGLWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAP-------- 108
AP PG L P P+S GLW + + W A + AP
Sbjct: 95 APPTPGALSSPLPQLLLAEQEPGTPSSTAQGLWEKTGHVITSWPQAGQSVAPDARPPTRG 154
Query: 109 WRPGLRHSR---TPQHRV-----LLHRRTLAGLRPG 136
WR L+ S+ TP+ + LHR T PG
Sbjct: 155 WRLHLQPSQAKPTPETLLQSTPSRLHRETCTLTAPG 190
Score = 27.3 bits (59), Expect = 4.1
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 3 PEDPASLRHGLWHQRTQPLAPWTMAAEDPAP--RILDYGSRGPSLPASWTKAPEDPAPSG 60
P P+S GLW + + W A + AP R G R P+ PE S
Sbjct: 116 PGTPSSTAQGLWEKTGHVITSWPQAGQSVAPDARPPTRGWRLHLQPSQAKPTPETLLQST 175
Query: 61 PGLWQQRTQPLAS 73
P + T L +
Sbjct: 176 PSRLHRETCTLTA 188
>gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 32.3 bits (72), Expect = 0.13
Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 12/128 (9%)
Query: 6 PASLRHGLWHQRTQPLAPW----TMAAEDPAPRILDYGSRGPSLPASWTKAPEDP-APSG 60
PA H R P +P T A APR L R PS P AP P S
Sbjct: 81 PAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPPLGKSE 140
Query: 61 PGLWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPWRPGLRHSRTPQ 120
PG + T ++ P A+LR L QP +P + A W G R R+ +
Sbjct: 141 PG--EPETSGPRAYLRDPGASAALRKVLATGPAQPTSPRLVFA-----WSRGARRERSSR 193
Query: 121 HRVLLHRR 128
+ R
Sbjct: 194 GGIFARPR 201
>gi|25282391 nurim [Homo sapiens]
Length = 262
Score = 31.2 bits (69), Expect = 0.28
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 55 DPAPSGPGLWQQRTQPLASW 74
+P P GP LW+ R +P A+W
Sbjct: 117 EPIPKGPVLWEARAEPWATW 136
>gi|119226260 calcium homeostasis endoplasmic reticulum protein
[Homo sapiens]
Length = 916
Score = 31.2 bits (69), Expect = 0.28
Identities = 31/127 (24%), Positives = 43/127 (33%), Gaps = 20/127 (15%)
Query: 3 PEDPASLRHGLWHQRTQPLAPWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPSGPG 62
P D W + P+APW P + P P W + E G
Sbjct: 410 PHDQIPPNKPPWFDQPHPVAPWGQQQPPEQPPYPHHQGGPPHCP-PWNNSHE-------G 461
Query: 63 LW-QQRTQPLASWTMAPEDPASLR-HGLWHQRTQPLAPWTMAAEDPAPW-----RPGLRH 115
+W +QR P W + P + + W+ + + PW E P PW P R
Sbjct: 462 MWGEQRGDP--GWNGQRDAPWNNQPDAAWNSQFE--GPWNSQHEQP-PWGGGQREPPFRM 516
Query: 116 SRTPQHR 122
R P R
Sbjct: 517 QRPPHFR 523
>gi|49619239 variable charge, X-linked 2 [Homo sapiens]
Length = 139
Score = 31.2 bits (69), Expect = 0.28
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 39 GSRGPSLPASWTKAPE-DPAPSGPGLWQQRTQPLASWTMAPEDPAS--LRHGLWHQRTQP 95
G +G + + APE + AP+ PG Q +Q L + PE+P S +H Q ++
Sbjct: 51 GKKGAATKMAAVTAPEAESAPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESEV 110
Query: 96 LAPWTMAAEDPAP 108
P + +E P
Sbjct: 111 EEPLSQESEVEEP 123
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 30.8 bits (68), Expect = 0.37
Identities = 25/81 (30%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 31 PAPRILDYGSRGPSLPASWTKAPEDPAPSGPGLWQQRTQPLASWTMAPEDPASLRHGLWH 90
P P + S GP P P PAP PG P +AP P L GL
Sbjct: 686 PPPPLPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPPAPPPPG---LAPPPPPGLFFGLGS 742
Query: 91 QRTQPLAPWTMAAEDPAPWRP 111
+Q P A E P +P
Sbjct: 743 SSSQ--CPRKPAIEPSCPMKP 761
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 30.4 bits (67), Expect = 0.48
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 8/122 (6%)
Query: 22 APWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPSGPGLWQQRTQPLASWTMAPED- 80
AP A AP + + P++PA KAP PAPS + AS AP
Sbjct: 442 APAASAPPRKAPAVPAPSQKAPAVPAPSQKAPAIPAPSRKASAASASPRKASAVPAPPQK 501
Query: 81 --PASLR----HGLWHQRTQPLAPWTMAAEDPAPWRPGLRHSRTPQHRVLLHRRTLAGLR 134
P S + + + P AP + PAP + L S T ++++ L G
Sbjct: 502 TPPPSQKAPSVPTIPQKAVSPTAPKKKSLLLPAPSQKALPTSPT-EYQMALSPPASRGKL 560
Query: 135 PG 136
PG
Sbjct: 561 PG 562
Score = 28.9 bits (63), Expect = 1.4
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 22 APWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPSGPGLWQQRTQPLASWTMAPEDP 81
AP + AP ++D + P++PAS K P PGL + P AS AP
Sbjct: 402 APSGLVTSCKAPFLVDQSQKLPAVPASSWKPP-------PGLAPPQKAPAAS---APPRK 451
Query: 82 ASLRHGLWHQRTQPLAPWTMAAEDPAPWRPGLRHSRTPQ 120
A + AP A PAP R S +P+
Sbjct: 452 APAVPAPSQKAPAVPAPSQKAPAIPAPSRKASAASASPR 490
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 30.4 bits (67), Expect = 0.48
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 23 PWTMAAEDPAPRILDYGSRGPSLP---ASWTKAP--EDPAPSGPGLWQQRTQPLASWTMA 77
PWT A P + + S GP P +S + P P P P ++ PL T A
Sbjct: 687 PWTPGASRPPSSLDGWVSPGPWEPGRGSSMSSPPPLPPPPPMSPSWSERSVSPLRPETEA 746
Query: 78 PEDPASL-----RHGLWHQRTQPLAPWTMAAEDPAPWRP 111
L R+ + R + +P + AE+P P+ P
Sbjct: 747 RPPSRQLQALLARNIINAARRKSASPRSAGAENPRPFSP 785
>gi|66932943 variable charge, X chromosome [Homo sapiens]
Length = 206
Score = 30.4 bits (67), Expect = 0.48
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 39 GSRGPSLPASWTKAPE-DPAPSGPGLWQQRTQPLASWTMAPEDPAS--LRHGLWHQRTQP 95
G +G + + APE + AP+ PG Q +Q L + PE+P S +H Q +
Sbjct: 51 GKKGAATKMAAVTAPEAESAPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQEAEL 110
Query: 96 LAPWTMAAEDPAP 108
P + +E P
Sbjct: 111 EEPLSQESEVEEP 123
>gi|4827022 contactin 2 precursor [Homo sapiens]
Length = 1040
Score = 30.0 bits (66), Expect = 0.63
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 44 SLPASWTKAPEDPAPSGPGLWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAPW 99
++ SW++ ++ +P Q RT P W +PA++ + L PW
Sbjct: 623 TIQLSWSRGFDNHSPIAKYTLQARTPPAGKWKQVRTNPANIEGNAETAQVLGLTPW 678
>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 30.0 bits (66), Expect = 0.63
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 3 PEDPASLRHGLWHQRTQPLAPWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPSGPG 62
P+ PA+ R ++ T P P P P L S L AS T P P P P
Sbjct: 308 PQSPATGRTPVFVSPTPPPPP------PPLPSALSTSS----LRASMTSTPPPPVPPPPP 357
Query: 63 LWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAP 98
T A P P + G+ H P+AP
Sbjct: 358 --PPATALQAPAVPPPPAPLQIAPGVLHPAPPPIAP 391
>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 30.0 bits (66), Expect = 0.63
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 3 PEDPASLRHGLWHQRTQPLAPWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPSGPG 62
P+ PA+ R ++ T P P P P L S L AS T P P P P
Sbjct: 308 PQSPATGRTPVFVSPTPPPPP------PPLPSALSTSS----LRASMTSTPPPPVPPPPP 357
Query: 63 LWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAP 98
T A P P + G+ H P+AP
Sbjct: 358 --PPATALQAPAVPPPPAPLQIAPGVLHPAPPPIAP 391
>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 30.0 bits (66), Expect = 0.63
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 3 PEDPASLRHGLWHQRTQPLAPWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPSGPG 62
P+ PA+ R ++ T P P P P L S L AS T P P P P
Sbjct: 308 PQSPATGRTPVFVSPTPPPPP------PPLPSALSTSS----LRASMTSTPPPPVPPPPP 357
Query: 63 LWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAP 98
T A P P + G+ H P+AP
Sbjct: 358 --PPATALQAPAVPPPPAPLQIAPGVLHPAPPPIAP 391
>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 30.0 bits (66), Expect = 0.63
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 3 PEDPASLRHGLWHQRTQPLAPWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPSGPG 62
P+ PA+ R ++ T P P P P L S L AS T P P P P
Sbjct: 308 PQSPATGRTPVFVSPTPPPPP------PPLPSALSTSS----LRASMTSTPPPPVPPPPP 357
Query: 63 LWQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAP 98
T A P P + G+ H P+AP
Sbjct: 358 --PPATALQAPAVPPPPAPLQIAPGVLHPAPPPIAP 391
>gi|45580719 osteoclast-associated receptor isoform 1 [Homo sapiens]
Length = 286
Score = 30.0 bits (66), Expect = 0.63
Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 32 APRILDYGSRGPSLPASWT-KAPED-PAPSGPGLWQQRTQPLASWTMAPEDPASLRHGLW 89
AP +L R L SW + PE PA S PG+ P AP + GL
Sbjct: 206 APYVLS--QRSEVLVISWEGEGPEARPASSAPGMQAPGPPPSDPGAQAPSLSSFRPRGLV 263
Query: 90 HQRTQPLAPWTMAAEDPAP 108
QPL P T + DPAP
Sbjct: 264 ---LQPLLPQTQDSWDPAP 279
>gi|212549561 ataxin 1-like [Homo sapiens]
Length = 689
Score = 30.0 bits (66), Expect = 0.63
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 22/110 (20%)
Query: 21 LAPWTMAAEDPAPRILDYGS----------RGPSLPASWTKAPEDPAPSGPGLWQQRTQP 70
L+P A P + Y S + PS S+ KAP +PSG TQP
Sbjct: 160 LSPSANLATSHLPHFVPYASLLAEGATPPPQAPSPAHSFNKAPSATSPSGQLPHHSSTQP 219
Query: 71 LASWTMAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPWRPGLRHSRTPQ 120
L D A R +++Q ++ A +T+ PA P L TPQ
Sbjct: 220 L--------DLAPGRMPIYYQMSRLPAGYTLHETPPAGASPVL----TPQ 257
>gi|14916427 naked cuticle homolog 2 [Homo sapiens]
Length = 451
Score = 30.0 bits (66), Expect = 0.63
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 11 HGLWHQRTQPLAPWTMAAEDPAPRILDYGSR--GP-----SLPASWTKAPEDPAPSGPGL 63
H + H+R+Q L + A +PA R LD R GP P K P PA S G
Sbjct: 292 HAVHHRRSQVLVEHVVPASEPAARALDTQPRPKGPEKQFLKSPKGSGKPPGVPASSKSGK 351
Query: 64 WQQRTQPLASWTMAPED 80
P AP+D
Sbjct: 352 AFSYYLPAVLPPQAPQD 368
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 29.6 bits (65), Expect = 0.83
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 2 APEDP--ASLRHGLWHQRTQPLAPWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPAPS 59
APE+P A++R + P A E +P P+ PA+ PE+P
Sbjct: 983 APEEPDTAAVRVSTPEEPASPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPPPEEPTSP 1042
Query: 60 GPGL--WQQRTQPLASWTMAPEDPASLRHGLWHQRTQPLAPWTMAAEDPAPWRP 111
+ ++ T P A+ PE+P S + P P + AA P P P
Sbjct: 1043 AAAVPTPEEPTSPAAA-VPTPEEPTSPAAAV----PTPEEPTSPAAAVPTPEEP 1091
>gi|78499633 phospholipase C, eta 2 [Homo sapiens]
Length = 1416
Score = 29.6 bits (65), Expect = 0.83
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 20/76 (26%)
Query: 37 DYGSRGPS---LPASWTKAPEDPAPSGPGLWQQR-TQPLASWTMAPEDPASLRHGLWHQR 92
D GS+G + +P APE PA GPG R T+PL++ P
Sbjct: 953 DTGSKGVADDVVPPGPGPAPEAPAQEGPGSGSPRDTRPLSTQRPLP-------------- 998
Query: 93 TQPLAPWTMAAEDPAP 108
PL AE+PAP
Sbjct: 999 --PLCSLETIAEEPAP 1012
>gi|239750954 PREDICTED: hypothetical protein XP_002347616 [Homo
sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 0.83
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 19 QPLAPWTMAAEDPAPRILDYGSRGPSLPASWTKAPEDPA---PSGPGLWQQRT 68
+ L P PAP ++GP LPAS T+ P P+ P+ P LW T
Sbjct: 32 ETLLPAAQGPMVPAPS----DTQGPRLPASQTRTPMYPSRAHPTHPRLWWAHT 80
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,945,127
Number of Sequences: 37866
Number of extensions: 469602
Number of successful extensions: 2042
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 1874
Number of HSP's gapped (non-prelim): 286
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.