Guide to the Human Genome
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Name: ZSCAN20 Sequence: fasta or formatted (1043aa) NCBI GI: 148596977
Description:

zinc finger protein 31

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         73           2
 C cysteine            3.9         41           2
 D aspartate           3.9         41           2
 E glutamate          10.7        112           2
 F phenylalanine       3.2         33           2
 G glycine             7.0         73           2
 H histidine           3.7         39           1
 I isoleucine          2.9         30           2
 K lysine              6.1         64           2
 L leucine             7.9         82           2
 M methionine          1.1         11           1
 N asparagine          3.3         34           2
 P proline             6.0         63           2
 Q glutamine           5.6         58           1
 R arginine            6.3         66           2
 S serine              8.9         93           3
 T threonine           4.8         50           1
 V valine              3.4         35           1
 W tryptophan          2.0         21           1
 Y tyrosine            2.3         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 31 
ZSCAN29               0.290   zinc finger protein 690 
ZKSCAN2               0.286   zinc finger with KRAB and SCAN domains 2 
ZSCAN2                0.204   zinc finger protein 29 isoform 1 
ZNF167                0.190   zinc finger protein 167 isoform 1 
ZFP2                  0.189   zinc finger protein 2 homolog 
ZNF852                0.186   PREDICTED: zinc finger protein 852 
ZNF852                0.186   PREDICTED: zinc finger protein 852 
ZNF852                0.186   PREDICTED: zinc finger protein 852 
ZNF665                0.186   zinc finger protein 665 
ZNF79                 0.185   zinc finger protein 79 
ZNF502                0.185   zinc finger protein 502 
ZNF502                0.185   zinc finger protein 502 
ZNF502                0.185   zinc finger protein 502 
ZNF502                0.185   zinc finger protein 502 
ZNF160                0.185   zinc finger protein 160 
ZNF160                0.185   zinc finger protein 160 
ZNF160                0.185   zinc finger protein 160 
ZNF135                0.184   zinc finger protein 135 
ZNF180                0.184   zinc finger protein 180 
ZNF23                 0.184   zinc finger protein 23 
ZNF436                0.184   zinc finger protein 436 
ZNF436                0.184   zinc finger protein 436 
ZNF629                0.184   zinc finger protein 629 
LOC647678             0.183   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC647678             0.183   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.183   PREDICTED: hypothetical protein XP_002343697 
ZNF568                0.182   zinc finger protein 568 
ZNF420                0.182   zinc finger protein 420 
ZNF287                0.182   zinc finger protein 287 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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