Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239744744
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744744 PREDICTED: hypothetical protein XP_002343250 [Homo
sapiens]
(102 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755924 PREDICTED: hypothetical protein [Homo sapiens] 205 7e-54
gi|239750442 PREDICTED: hypothetical protein XP_002347364 [Homo ... 205 7e-54
gi|239744744 PREDICTED: hypothetical protein XP_002343250 [Homo ... 205 7e-54
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 38 0.002
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 37 0.003
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 37 0.003
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 37 0.003
gi|239753821 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 37 0.004
gi|40255047 pleckstrin homology domain containing, family H (wit... 36 0.007
gi|239757099 PREDICTED: hypothetical protein [Homo sapiens] 35 0.010
gi|239755634 PREDICTED: hypothetical protein [Homo sapiens] 35 0.010
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ... 35 0.010
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 35 0.010
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ... 35 0.010
gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo ... 35 0.010
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 35 0.010
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 35 0.010
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 35 0.010
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens] 35 0.013
gi|118600967 shroom family member 4 [Homo sapiens] 35 0.017
gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo ... 35 0.017
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo ... 35 0.017
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo ... 35 0.017
gi|239745245 PREDICTED: hypothetical protein XP_002343396 [Homo ... 35 0.017
gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo ... 35 0.017
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo ... 35 0.017
>gi|239755924 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 205 bits (521), Expect = 7e-54
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MSPLTAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGG 60
MSPLTAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGG
Sbjct: 1 MSPLTAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGG 60
Query: 61 LAPRATSGSRAARQRPDSAILGGVEMPLDAPVATTSALSSPS 102
LAPRATSGSRAARQRPDSAILGGVEMPLDAPVATTSALSSPS
Sbjct: 61 LAPRATSGSRAARQRPDSAILGGVEMPLDAPVATTSALSSPS 102
>gi|239750442 PREDICTED: hypothetical protein XP_002347364 [Homo
sapiens]
Length = 102
Score = 205 bits (521), Expect = 7e-54
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MSPLTAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGG 60
MSPLTAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGG
Sbjct: 1 MSPLTAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGG 60
Query: 61 LAPRATSGSRAARQRPDSAILGGVEMPLDAPVATTSALSSPS 102
LAPRATSGSRAARQRPDSAILGGVEMPLDAPVATTSALSSPS
Sbjct: 61 LAPRATSGSRAARQRPDSAILGGVEMPLDAPVATTSALSSPS 102
>gi|239744744 PREDICTED: hypothetical protein XP_002343250 [Homo
sapiens]
Length = 102
Score = 205 bits (521), Expect = 7e-54
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MSPLTAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGG 60
MSPLTAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGG
Sbjct: 1 MSPLTAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGG 60
Query: 61 LAPRATSGSRAARQRPDSAILGGVEMPLDAPVATTSALSSPS 102
LAPRATSGSRAARQRPDSAILGGVEMPLDAPVATTSALSSPS
Sbjct: 61 LAPRATSGSRAARQRPDSAILGGVEMPLDAPVATTSALSSPS 102
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 37.7 bits (86), Expect = 0.002
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 12 RTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGGLAP---RATSG 68
RTP PP RR PS R SP ++ R P P+ R A PP P +P R S
Sbjct: 580 RTPSPPP--RRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSH 637
Query: 69 SRAARQR 75
S +QR
Sbjct: 638 SPPPKQR 644
Score = 31.2 bits (69), Expect = 0.18
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 15 RPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGGLAP----RATSGSR 70
R P+L ++ S SP R+ R P P R +P P P +P R S S
Sbjct: 652 RSPSLSSKHRKGS---SPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSP 708
Query: 71 AARQRP 76
RQ P
Sbjct: 709 QRRQSP 714
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 13/61 (21%)
Query: 9 RGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGGLAPRATSG 68
R R+P PP RR PS P PR RR P P P PR S
Sbjct: 545 RRRRSPSPPPTRRRRSPSPA-------------PPPRRRRTPTPPPRRRTPSPPPRRRSP 591
Query: 69 S 69
S
Sbjct: 592 S 592
Score = 26.9 bits (58), Expect = 3.5
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 8 ERGPRTPRPPALGTRRLPSSVR----GSPQLED--RQPRRPLPRLRRAPPPAPALGNGGL 61
+R +PRP A T P VR SPQ RP+ R+ R P P
Sbjct: 680 KRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASP 739
Query: 62 AP---RATSGSRAARQRPDSA 79
+P R S SR+ P+ A
Sbjct: 740 SPQSVRRVSSSRSVSGSPEPA 760
Score = 25.8 bits (55), Expect = 7.7
Identities = 28/79 (35%), Positives = 30/79 (37%), Gaps = 16/79 (20%)
Query: 9 RGPRTPRPPALGTRRLPSSVRG-SPQLEDRQPRRPLPRLRRAP---PPAPALGNGGLAPR 64
R P RP RR S R SP+ RRP PR R P PP P
Sbjct: 291 RSPSHTRP----RRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPR--------H 338
Query: 65 ATSGSRAARQRPDSAILGG 83
S S R+R SA L G
Sbjct: 339 RRSRSPVRRRRRSSASLSG 357
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 11 PRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAP 54
P P+ R+ +S RG + R P P R RR+P PAP
Sbjct: 525 PSRSASPSPRKRQKETSPRGRRR---RSPSPPPTRRRRSPSPAP 565
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 37.4 bits (85), Expect = 0.003
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 6 AAERGPRTP--RPPALGTRRLPSSVRGSPQLEDRQPRR-PLPRLRRAP-PPAPALGNGGL 61
A + GP P RPPA +R P S QP PLP +P PPAP L G
Sbjct: 208 APQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGR- 266
Query: 62 APRATSGSRAARQRPDSA 79
AP +T+G R + P +A
Sbjct: 267 APGSTAGRRPRPREPQAA 284
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 37.4 bits (85), Expect = 0.003
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 6 AAERGPRTP--RPPALGTRRLPSSVRGSPQLEDRQPRR-PLPRLRRAP-PPAPALGNGGL 61
A + GP P RPPA +R P S QP PLP +P PPAP L G
Sbjct: 208 APQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGR- 266
Query: 62 APRATSGSRAARQRPDSA 79
AP +T+G R + P +A
Sbjct: 267 APGSTAGRRPRPREPQAA 284
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 37.4 bits (85), Expect = 0.003
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 6 AAERGPRTP--RPPALGTRRLPSSVRGSPQLEDRQPRR-PLPRLRRAP-PPAPALGNGGL 61
A + GP P RPPA +R P S QP PLP +P PPAP L G
Sbjct: 208 APQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGR- 266
Query: 62 APRATSGSRAARQRPDSA 79
AP +T+G R + P +A
Sbjct: 267 APGSTAGRRPRPREPQAA 284
>gi|239753821 PREDICTED: hypothetical protein [Homo sapiens]
Length = 192
Score = 37.0 bits (84), Expect = 0.003
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 9 RGPRTPRPPALGTRRLPSSVRGSP--QLEDRQPRRPLPRLRRAPPPAPALGNGGLAPRAT 66
R PR P PP TRR + + L R P+ +PR RAP PAPA G P+
Sbjct: 124 REPRAPLPPYTSTRRASPAAAAAAILLLPARLPQLRMPR-ARAPRPAPA----GQPPKRE 178
Query: 67 SGSRAARQRPDSA 79
+ A R P +A
Sbjct: 179 RAAAAPRSAPAAA 191
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 36.6 bits (83), Expect = 0.004
Identities = 29/98 (29%), Positives = 35/98 (35%), Gaps = 11/98 (11%)
Query: 5 TAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGGLAPR 64
TAA+ P+ P LG R + R P PR R P A N +PR
Sbjct: 1202 TAADLRPKQPPGRGLGPGRAQAGARP-----------PAPRSPRLPASTSAARNASASPR 1250
Query: 65 ATSGSRAARQRPDSAILGGVEMPLDAPVATTSALSSPS 102
+ S SR P GV P P A +PS
Sbjct: 1251 SQSLSRRESPSPSHQARPGVPPPRGVPPARAQPDGTPS 1288
>gi|40255047 pleckstrin homology domain containing, family H (with
MyTH4 domain) member 3 [Homo sapiens]
Length = 793
Score = 35.8 bits (81), Expect = 0.007
Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 16 PPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRR-APPPAPALGNGGLAPRATSGSRAARQ 74
PP T R +++R D PR PLPRL R PPPAP PR R
Sbjct: 529 PPPDDTLRALAALRLQSLHRDFSPRVPLPRLDRLLPPPAP--------PREDPPRPTPRP 580
Query: 75 RPDSAILGG 83
P +A+L G
Sbjct: 581 PPSAALLAG 589
>gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 35.4 bits (80), Expect = 0.010
Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 16/92 (17%)
Query: 4 LTAAERGPR-TPRPPALG-----TRRLPSSVRGSPQLEDR----------QPRRPLPRLR 47
L ERGP +PRP +RRLP+S G P+ R RRP P
Sbjct: 68 LGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRP 127
Query: 48 RAPPPAPALGNGGLAPRATSGSRAARQRPDSA 79
P P LG TSG RA + P ++
Sbjct: 128 PMSAPTPPLGKSEPGEPETSGPRAYLRDPGAS 159
>gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 449
Score = 35.4 bits (80), Expect = 0.010
Identities = 31/75 (41%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 5 TAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGGLAPR 64
+A E G RT RP R S PQ P RPLP RR P PAPA A
Sbjct: 234 SARECGKRTQRPEQRFLCRGSSFCGHRPQR--LHPGRPLPPQRRPPGPAPA------AAG 285
Query: 65 ATSGSRAARQRPDSA 79
AT G+ A R SA
Sbjct: 286 ATRGTAAPPGRDPSA 300
>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
sapiens]
Length = 208
Score = 35.4 bits (80), Expect = 0.010
Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 16/92 (17%)
Query: 4 LTAAERGPR-TPRPPALG-----TRRLPSSVRGSPQLEDR----------QPRRPLPRLR 47
L ERGP +PRP +RRLP+S G P+ R RRP P
Sbjct: 68 LGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRP 127
Query: 48 RAPPPAPALGNGGLAPRATSGSRAARQRPDSA 79
P P LG TSG RA + P ++
Sbjct: 128 PMSAPTPPLGKSEPGEPETSGPRAYLRDPGAS 159
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 35.4 bits (80), Expect = 0.010
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 1 MSPLTAAERGPRTPRPPALGTRRLPSSV------RGSPQLEDRQPRRPLPRLRRAPPPAP 54
+S L AA+ R+P P G + S + RG+P + PLP +PPP P
Sbjct: 69 LSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARPSSPPPRP 128
Query: 55 ALGNGG----LAPRATSGSRAARQRP 76
+L +G L P A + R RP
Sbjct: 129 SLPSGPHRPVLPPSALAAPRPPLARP 154
>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
sapiens]
Length = 208
Score = 35.4 bits (80), Expect = 0.010
Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 16/92 (17%)
Query: 4 LTAAERGPR-TPRPPALG-----TRRLPSSVRGSPQLEDR----------QPRRPLPRLR 47
L ERGP +PRP +RRLP+S G P+ R RRP P
Sbjct: 68 LGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRP 127
Query: 48 RAPPPAPALGNGGLAPRATSGSRAARQRPDSA 79
P P LG TSG RA + P ++
Sbjct: 128 PMSAPTPPLGKSEPGEPETSGPRAYLRDPGAS 159
>gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo
sapiens]
Length = 449
Score = 35.4 bits (80), Expect = 0.010
Identities = 31/75 (41%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 5 TAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGGLAPR 64
+A E G RT RP R S PQ P RPLP RR P PAPA A
Sbjct: 234 SARECGKRTQRPEQRFLCRGSSFCGHRPQR--LHPGRPLPPQRRPPGPAPA------AAG 285
Query: 65 ATSGSRAARQRPDSA 79
AT G+ A R SA
Sbjct: 286 ATRGTAAPPGRDPSA 300
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 35.4 bits (80), Expect = 0.010
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 1 MSPLTAAERGPRTPRPPALGTRRLPSSV------RGSPQLEDRQPRRPLPRLRRAPPPAP 54
+S L AA+ R+P P G + S + RG+P + PLP +PPP P
Sbjct: 69 LSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARPSSPPPRP 128
Query: 55 ALGNGG----LAPRATSGSRAARQRP 76
+L +G L P A + R RP
Sbjct: 129 SLPSGPHRPVLPPSALAAPRPPLARP 154
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 35.4 bits (80), Expect = 0.010
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 6 AAERGPRTPR-----PPALGTRRLPSSVRGSPQLE-DRQPRRPLPRLRRAPPPAPALGNG 59
AA G R PR P L +RRLP S +PQ D RRPL R AP A G+
Sbjct: 78 AASGGSRAPRHGPARDPGLPSRRLPGSCPATPQSSGDPSSRRPL--CRPAPREEGARGSQ 135
Query: 60 GLAPRATSGSR----AARQRP 76
+ P+A R AA RP
Sbjct: 136 RVLPQAHCRPREALPAAASRP 156
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 35.4 bits (80), Expect = 0.010
Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 33/110 (30%)
Query: 8 ERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRA------------------ 49
+R P PRPP TR LP + S ++P+P L R
Sbjct: 427 QRNPGMPRPPPPSTRPLPPTTSSS--------KKPIPTLARTEAKITSHASKPASARTST 478
Query: 50 --PPPAPALGNGGLAPRATSGSRAARQRPDSAI--LGGVEMPLDAPVATT 95
PPP AL + +P T GS + + P + + G P AP T
Sbjct: 479 HKPPPFTALSS---SPAPTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPT 525
>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 2240
Score = 35.0 bits (79), Expect = 0.013
Identities = 30/73 (41%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 9 RGPRTPRPPALGTRRLPSSVRG-SPQLEDRQPRRP----LPRLRRAPPPAPALGNGGLAP 63
RG R PRPP L RRLP++ +P QPRRP R +PAL GGL
Sbjct: 241 RGKRAPRPP-LRRRRLPAAASAPAPVPRPSQPRRPGTPEAVASRAVAGLSPALPPGGLEE 299
Query: 64 RAT-SGSRAARQR 75
A SG R R
Sbjct: 300 MAQGSGGREGALR 312
>gi|118600967 shroom family member 4 [Homo sapiens]
Length = 1493
Score = 34.7 bits (78), Expect = 0.017
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 1 MSPLTAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGN-- 58
+SPL ++ +G ++P PP GT S R + Q++DR + + +PP A G+
Sbjct: 447 LSPLHSSHKGKKSPCPPTGGTHDQSSKERKTRQVDDRSLVLG-HQSQSSPPHGEADGHPS 505
Query: 59 --GGLAPRATS--GSRAARQRPDSA 79
G L P TS S A Q+P ++
Sbjct: 506 EKGFLDPNRTSRAASELANQQPSAS 530
>gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo
sapiens]
Length = 218
Score = 34.7 bits (78), Expect = 0.017
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 3 PLTAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAP---ALGNG 59
P + PR P+PP R LP + P R P+ PLP R PP+P A
Sbjct: 26 PPLPPRKPPRPPKPP----RPLPPNPPRPPLPPPRPPKPPLPPPRPPKPPSPLGLAQSKV 81
Query: 60 GLAPRATSGSRA--ARQRPDSAILGGVEMPLDAPVA---TTSALSSPS 102
L P + S A A S + PL+ PV+ T A + PS
Sbjct: 82 TLFPSISPSSMASLAALASSSLLKSTKPNPLEDPVSRSVTILARTEPS 129
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 16 PPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAP 54
PP L R+ P + L PR PLP R PP P
Sbjct: 25 PPPLPPRKPPRPPKPPRPLPPNPPRPPLPPPRPPKPPLP 63
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 34.7 bits (78), Expect = 0.017
Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 9 RGPRTPRP-PALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGGLAPRATS 67
RGPR P P PAL R P E+R+ P R R PP PA G G A+
Sbjct: 54 RGPRAPSPAPAL-------PARARPPRENRKRAVPA-RAARGPPKRPAGGQTGGVEAASG 105
Query: 68 GSRAARQRP 76
R+ +RP
Sbjct: 106 EERSQPRRP 114
Score = 33.1 bits (74), Expect = 0.048
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 7 AERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAP 54
A RGP P+ PA G + G + + R+PRRP P RR P PAP
Sbjct: 84 AARGP--PKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRR-PRPAP 128
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 20 GTRRLPSSVRGSPQLEDRQPRRPL--PRLRRAPPPAPALGNGGLAPRATSGSRAARQRPD 77
G P S RG + +PRR P L+R+ PPAP PR + RA + P
Sbjct: 177 GLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRS-DPRDPAAPRAGPEAPP 235
Query: 78 SA 79
A
Sbjct: 236 PA 237
>gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo
sapiens]
Length = 218
Score = 34.7 bits (78), Expect = 0.017
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 3 PLTAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAP---ALGNG 59
P + PR P+PP R LP + P R P+ PLP R PP+P A
Sbjct: 26 PPLPPRKPPRPPKPP----RPLPPNPPRPPLPPPRPPKPPLPPPRPPKPPSPLGLAQSKV 81
Query: 60 GLAPRATSGSRA--ARQRPDSAILGGVEMPLDAPVA---TTSALSSPS 102
L P + S A A S + PL+ PV+ T A + PS
Sbjct: 82 TLFPSISPSSMASLAALASSSLLKSTKPNPLEDPVSRSVTILARTEPS 129
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 16 PPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAP 54
PP L R+ P + L PR PLP R PP P
Sbjct: 25 PPPLPPRKPPRPPKPPRPLPPNPPRPPLPPPRPPKPPLP 63
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 34.7 bits (78), Expect = 0.017
Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 9 RGPRTPRP-PALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGGLAPRATS 67
RGPR P P PAL R P E+R+ P R R PP PA G G A+
Sbjct: 54 RGPRAPSPAPAL-------PARARPPRENRKRAVPA-RAARGPPKRPAGGQTGGVEAASG 105
Query: 68 GSRAARQRP 76
R+ +RP
Sbjct: 106 EERSQPRRP 114
Score = 33.1 bits (74), Expect = 0.048
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 7 AERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAP 54
A RGP P+ PA G + G + + R+PRRP P RR P PAP
Sbjct: 84 AARGP--PKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRR-PRPAP 128
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 20 GTRRLPSSVRGSPQLEDRQPRRPL--PRLRRAPPPAPALGNGGLAPRATSGSRAARQRPD 77
G P S RG + +PRR P L+R+ PPAP PR + RA + P
Sbjct: 177 GLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRS-DPRDPAAPRAGPEAPP 235
Query: 78 SA 79
A
Sbjct: 236 PA 237
>gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo
sapiens]
Length = 144
Score = 34.7 bits (78), Expect = 0.017
Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 10 GPRTPRPPALGTRRLPSS-VRGSP-QLEDRQPRRPLPRLRRAPPPAPALGNGGLAPRATS 67
GPR P PA G R P VRGSP P L APPP + G R
Sbjct: 16 GPRRPSGPASGATRPPRRRVRGSPWHAAGASFPAPAQLLLPAPPPGSRVSLGSAPGRPPP 75
Query: 68 GSRAARQRP 76
+ AAR+ P
Sbjct: 76 PALAARRAP 84
>gi|239745245 PREDICTED: hypothetical protein XP_002343396 [Homo
sapiens]
Length = 142
Score = 34.7 bits (78), Expect = 0.017
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 2 SPLTAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGGL 61
S LTAA + LG +P S+ SP L QP + AP PA G G L
Sbjct: 30 SELTAARQ------TAGLGPPGIPCSLARSPTLATHQPSQ-------APKSLPAAGQGRL 76
Query: 62 APRATSGSRAARQR 75
P +SG R +R
Sbjct: 77 PPAGSSGEREEDRR 90
>gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo
sapiens]
Length = 218
Score = 34.7 bits (78), Expect = 0.017
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 3 PLTAAERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAP---ALGNG 59
P + PR P+PP R LP + P R P+ PLP R PP+P A
Sbjct: 26 PPLPPRKPPRPPKPP----RPLPPNPPRPPLPPPRPPKPPLPPPRPPKPPSPLGLAQSKV 81
Query: 60 GLAPRATSGSRA--ARQRPDSAILGGVEMPLDAPVA---TTSALSSPS 102
L P + S A A S + PL+ PV+ T A + PS
Sbjct: 82 TLFPSISPSSMASLAALASSSLLKSTKPNPLEDPVSRSVTILARTEPS 129
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 16 PPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAP 54
PP L R+ P + L PR PLP R PP P
Sbjct: 25 PPPLPPRKPPRPPKPPRPLPPNPPRPPLPPPRPPKPPLP 63
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 34.7 bits (78), Expect = 0.017
Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 9 RGPRTPRP-PALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAPALGNGGLAPRATS 67
RGPR P P PAL R P E+R+ P R R PP PA G G A+
Sbjct: 54 RGPRAPSPAPAL-------PARARPPRENRKRAVPA-RAARGPPKRPAGGQTGGVEAASG 105
Query: 68 GSRAARQRP 76
R+ +RP
Sbjct: 106 EERSQPRRP 114
Score = 33.1 bits (74), Expect = 0.048
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 7 AERGPRTPRPPALGTRRLPSSVRGSPQLEDRQPRRPLPRLRRAPPPAP 54
A RGP P+ PA G + G + + R+PRRP P RR P PAP
Sbjct: 84 AARGP--PKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRR-PRPAP 128
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 20 GTRRLPSSVRGSPQLEDRQPRRPL--PRLRRAPPPAPALGNGGLAPRATSGSRAARQRPD 77
G P S RG + +PRR P L+R+ PPAP PR + RA + P
Sbjct: 177 GLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRS-DPRDPAAPRAGPEAPP 235
Query: 78 SA 79
A
Sbjct: 236 PA 237
>gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo
sapiens]
Length = 144
Score = 34.7 bits (78), Expect = 0.017
Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 10 GPRTPRPPALGTRRLPSS-VRGSP-QLEDRQPRRPLPRLRRAPPPAPALGNGGLAPRATS 67
GPR P PA G R P VRGSP P L APPP + G R
Sbjct: 16 GPRRPSGPASGATRPPRRRVRGSPWHAAGASFPAPAQLLLPAPPPGSRVSLGSAPGRPPP 75
Query: 68 GSRAARQRP 76
+ AAR+ P
Sbjct: 76 PALAARRAP 84
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,512,513
Number of Sequences: 37866
Number of extensions: 360516
Number of successful extensions: 3208
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 486
Number of HSP's that attempted gapping in prelim test: 2496
Number of HSP's gapped (non-prelim): 1101
length of query: 102
length of database: 18,247,518
effective HSP length: 73
effective length of query: 29
effective length of database: 15,483,300
effective search space: 449015700
effective search space used: 449015700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.