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Search of human proteins with 11641283
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11641283 LIM homeobox protein 5 [Homo sapiens]
(402 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11641283 LIM homeobox protein 5 [Homo sapiens] 842 0.0
gi|30410785 LIM homeobox protein 1 [Homo sapiens] 624 e-179
gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens] 245 6e-65
gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens] 245 6e-65
gi|15375314 LIM homeobox protein 4 [Homo sapiens] 245 6e-65
gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens] 196 2e-50
gi|28893581 LIM homeobox transcription factor 1, alpha isoform a... 191 1e-48
gi|115387114 islet-1 [Homo sapiens] 163 2e-40
gi|30795196 LIM homeobox protein 2 [Homo sapiens] 163 3e-40
gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens] 162 7e-40
gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens] 162 7e-40
gi|21956641 ISL LIM homeobox 2 [Homo sapiens] 161 9e-40
gi|50083287 LIM homeobox 8 [Homo sapiens] 157 2e-38
gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens] 157 2e-38
gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens] 157 2e-38
gi|5803072 LIM domain only 4 [Homo sapiens] 110 2e-24
gi|4505005 LIM domain only 1 [Homo sapiens] 104 2e-22
gi|21361802 LIM domain only 3 [Homo sapiens] 101 1e-21
gi|47778935 LIM domain only 3 [Homo sapiens] 101 1e-21
gi|4505001 LIM domain kinase 1 [Homo sapiens] 93 4e-19
gi|214832219 LIM domain only 2 isoform 2 [Homo sapiens] 87 3e-17
gi|214832121 LIM domain only 2 isoform 2 [Homo sapiens] 87 3e-17
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens] 87 3e-17
gi|7662330 actin binding LIM protein family, member 3 [Homo sapi... 86 6e-17
gi|51173715 actin-binding LIM protein 1 isoform c [Homo sapiens] 82 9e-16
gi|51173713 actin-binding LIM protein 1 isoform b [Homo sapiens] 82 9e-16
gi|51173711 actin-binding LIM protein 1 isoform a [Homo sapiens] 82 9e-16
gi|42741675 PDZ and LIM domain 7 isoform 2 [Homo sapiens] 75 1e-13
gi|11496885 PDZ and LIM domain 7 isoform 1 [Homo sapiens] 75 1e-13
gi|194272207 actin binding LIM protein family, member 2 isoform ... 74 2e-13
>gi|11641283 LIM homeobox protein 5 [Homo sapiens]
Length = 402
Score = 842 bits (2174), Expect = 0.0
Identities = 402/402 (100%), Positives = 402/402 (100%)
Query: 1 MMVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRF 60
MMVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRF
Sbjct: 1 MMVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRF 60
Query: 61 GTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYL 120
GTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYL
Sbjct: 61 GTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYL 120
Query: 121 SSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKR 180
SSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKR
Sbjct: 121 SSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKR 180
Query: 181 RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 240
RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ
Sbjct: 181 RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 240
Query: 241 LSALGARRHAFFRSPRRMRPLGGRLDESEMLGSTPYTYYGDYQGDYYAPGSNYDFFAHGP 300
LSALGARRHAFFRSPRRMRPLGGRLDESEMLGSTPYTYYGDYQGDYYAPGSNYDFFAHGP
Sbjct: 241 LSALGARRHAFFRSPRRMRPLGGRLDESEMLGSTPYTYYGDYQGDYYAPGSNYDFFAHGP 300
Query: 301 PSQAQSPADSSFLAASGPGSTPLGALEPPLAGPHAADNPRFTDMISHPDTPSPEPGLPGT 360
PSQAQSPADSSFLAASGPGSTPLGALEPPLAGPHAADNPRFTDMISHPDTPSPEPGLPGT
Sbjct: 301 PSQAQSPADSSFLAASGPGSTPLGALEPPLAGPHAADNPRFTDMISHPDTPSPEPGLPGT 360
Query: 361 LHPMPGEVFSGGPSPPFPMSGTSGYSGPLSHPNPELNEAAVW 402
LHPMPGEVFSGGPSPPFPMSGTSGYSGPLSHPNPELNEAAVW
Sbjct: 361 LHPMPGEVFSGGPSPPFPMSGTSGYSGPLSHPNPELNEAAVW 402
>gi|30410785 LIM homeobox protein 1 [Homo sapiens]
Length = 406
Score = 624 bits (1609), Expect = e-179
Identities = 305/409 (74%), Positives = 348/409 (85%), Gaps = 11/409 (2%)
Query: 2 MVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFG 61
MVHCAGC+RPILDRFLLNVLDRAWH+KCVQCCECK NL+EKCFSREGKLYCKNDFFR FG
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFG 60
Query: 62 TKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLS 121
TKCAGCAQGISPSDLVR+ARSKVFHLNCFTCM+CNKQLSTGEELY+IDENKFVCK+DYLS
Sbjct: 61 TKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLS 120
Query: 122 SSSL-KEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKR 180
+SS+ KE SL+S ++ +D SLSPD QD QDD K+++++ SDKE +NEN++QN G KR
Sbjct: 121 NSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKR 180
Query: 181 RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 240
RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ
Sbjct: 181 RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 240
Query: 241 LSALGARRHAFFRSPRRMRPLGGRLDESEMLGSTPYTYYGDYQGDYYAPGSNYDFFAHGP 300
LSALGARRHAFFRSPRRMRPL RL+ E++ + P+++YGDYQ +YY PG NYDFF GP
Sbjct: 241 LSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGP 300
Query: 301 P-SQAQSPADSSFLAASGPGSTPLGALEPPLAGPH-AADNPRFTDMISHP--DTPSPEPG 356
P SQAQ+P D F+ +SGP TPLG LE PL G H +++ RFTD+++HP D+PSPEP
Sbjct: 301 PSSQAQTPVDLPFVPSSGPSGTPLGGLEHPLPGHHPSSEAQRFTDILAHPPGDSPSPEPS 360
Query: 357 LPGTLHPMPGEVFSGGPSPPF---PMSGTSGYSGPLSHPNPELNEAAVW 402
LPG LH M EVF GPSPPF ++G + Y LSHP PE+NEAAVW
Sbjct: 361 LPGPLHSMSAEVF--GPSPPFSSLSVNGGASYGNHLSHP-PEMNEAAVW 406
>gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens]
Length = 397
Score = 245 bits (625), Expect = 6e-65
Identities = 157/418 (37%), Positives = 218/418 (52%), Gaps = 81/418 (19%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
CAGC++ ILDRF+L LDR WH KC++C +C T L+E+CFSR +YCK+DFF+RFGTKC
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKC 90
Query: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
A C GI P+ +VR+A+ V+HL+CF C+VC +QL+TG+E Y++++++ VCK DY
Sbjct: 91 AACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY----- 145
Query: 125 LKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
ETA E + + PR
Sbjct: 146 ----------------------------------------ETAKQREAEATA----KRPR 161
Query: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
TTI AKQLETLK+A+ +PKP RH+REQL+ ETGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 162 TTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK-DAG 220
Query: 245 GARRHAFFRSPRRMRPLGGRLDE---SEMLGSTPYTYYGDYQGDYYAPGSNYDFFAHGPP 301
R +FR+ +R R G + D+ E S + D +N + + G P
Sbjct: 221 RQRWGQYFRNMKRSRG-GSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEP 279
Query: 302 SQA---QSPADSSFLAASG------------PGSTPLGALEPPLAGPHAADNPR-FTDMI 345
+QA S A +F G PGS P G + P A P + P+ +
Sbjct: 280 TQALGRPSGALGNFSLEHGGLAGPEQYRELRPGS-PYG-VPPSPAAPQSLPGPQPLLSSL 337
Query: 346 SHPDT-----PSPEPGLPGTLHPMPGEVFSGGPSPPFPMSGTSGYSGPLSHPNPELNE 398
+PDT PS PG P + + G GPS + GY + P L+E
Sbjct: 338 VYPDTSLGLVPSGAPGGPPPMRVLAG----NGPSSDLSTGSSGGYPDFPASPASWLDE 391
>gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens]
Length = 402
Score = 245 bits (625), Expect = 6e-65
Identities = 157/418 (37%), Positives = 218/418 (52%), Gaps = 81/418 (19%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
CAGC++ ILDRF+L LDR WH KC++C +C T L+E+CFSR +YCK+DFF+RFGTKC
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKC 95
Query: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
A C GI P+ +VR+A+ V+HL+CF C+VC +QL+TG+E Y++++++ VCK DY
Sbjct: 96 AACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY----- 150
Query: 125 LKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
ETA E + + PR
Sbjct: 151 ----------------------------------------ETAKQREAEATA----KRPR 166
Query: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
TTI AKQLETLK+A+ +PKP RH+REQL+ ETGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 167 TTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK-DAG 225
Query: 245 GARRHAFFRSPRRMRPLGGRLDE---SEMLGSTPYTYYGDYQGDYYAPGSNYDFFAHGPP 301
R +FR+ +R R G + D+ E S + D +N + + G P
Sbjct: 226 RQRWGQYFRNMKRSRG-GSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEP 284
Query: 302 SQA---QSPADSSFLAASG------------PGSTPLGALEPPLAGPHAADNPR-FTDMI 345
+QA S A +F G PGS P G + P A P + P+ +
Sbjct: 285 TQALGRPSGALGNFSLEHGGLAGPEQYRELRPGS-PYG-VPPSPAAPQSLPGPQPLLSSL 342
Query: 346 SHPDT-----PSPEPGLPGTLHPMPGEVFSGGPSPPFPMSGTSGYSGPLSHPNPELNE 398
+PDT PS PG P + + G GPS + GY + P L+E
Sbjct: 343 VYPDTSLGLVPSGAPGGPPPMRVLAG----NGPSSDLSTGSSGGYPDFPASPASWLDE 396
>gi|15375314 LIM homeobox protein 4 [Homo sapiens]
Length = 390
Score = 245 bits (625), Expect = 6e-65
Identities = 120/258 (46%), Positives = 165/258 (63%), Gaps = 55/258 (21%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
CAGC + ILD+F+L VLDR WH C++C +C+ L+++CFSR G +YCK DFF+RFGTKC
Sbjct: 30 CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKC 89
Query: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
C QGI P+ +VRKA+ V+HL+CF C++CN+QL+TG+E Y++++ + VCK+DY
Sbjct: 90 TACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDY----- 144
Query: 125 LKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
ETA +N++ +G KR PR
Sbjct: 145 ----------------------------------------ETA-KQNDDSEAGAKR--PR 161
Query: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
TTI AKQLETLK A+ +PKP RH+REQL+ ETGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 162 TTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK---- 217
Query: 245 GARRH---AFFRSPRRMR 259
A RH F++S +R R
Sbjct: 218 DAGRHRWGQFYKSVKRSR 235
>gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens]
Length = 372
Score = 196 bits (499), Expect = 2e-50
Identities = 116/346 (33%), Positives = 183/346 (52%), Gaps = 37/346 (10%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
C GC+RPI DRFL+ V + +WH +C+QC C+ L+ C+ R+ KLYCK D+ + F KC
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 92
Query: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
+GC + I+P++ V +A V+HL CF C VC +QL G+E +V+ E + +CK DY
Sbjct: 93 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDE-FVLKEGQLLCKGDYEKEKD 151
Query: 125 LKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKR-RGP 183
L S+SPD D+++ + ++ D + + + + + + +R + P
Sbjct: 152 LLS------------SVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRP 199
Query: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
RT + +Q KA+F + KP R +RE LA ETGL++RV+QVWFQN+R+K +++
Sbjct: 200 RTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL----- 254
Query: 244 LGARRHAFFRSPRRMRPLGGRLDESEMLG-STPYTYYGDYQGDYYA----PGSNYDFFAH 298
ARRH + + + LG + S M G YT Q A P + D F
Sbjct: 255 --ARRHQQQQEQQNSQRLGQEVLSSRMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQ 312
Query: 299 G--PPSQAQS-------PADSSFLAASG--PGSTPLGALEPPLAGP 333
G PP + +D+S + S GS+ +G+L+ + P
Sbjct: 313 GLTPPQMPGNDSIFHDIDSDTSLTSLSDCFLGSSDVGSLQARVGNP 358
>gi|28893581 LIM homeobox transcription factor 1, alpha isoform a
[Homo sapiens]
Length = 382
Score = 191 bits (485), Expect = 1e-48
Identities = 99/236 (41%), Positives = 143/236 (60%), Gaps = 19/236 (8%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
C GC+R ILDRFLL + D WH +CVQC CK L CF R+ KLYCK D+ + F KC
Sbjct: 35 CEGCQRVILDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKC 94
Query: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
GC + I+P++ V +A+ V+HL+CF C VC +QL G+E +V+ E + +CK DY
Sbjct: 95 GGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDE-FVLKEGQLLCKGDY----- 148
Query: 125 LKEGSLNSVSSCTDRSLSPDLQDALQDDPKET--DNSTSSDKETANNENEEQNSGTKRRG 182
KE L S+ +SP D+ + D +E+ ++ + K TA EE + +
Sbjct: 149 EKERELLSL-------VSPAASDSGKSDDEESLCKSAHGAGKGTA----EEGKDHKRPKR 197
Query: 183 PRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRM 238
PRT + +Q KA+F + KP R +RE LA ETGL++RV+QVWFQN+R+K +++
Sbjct: 198 PRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|115387114 islet-1 [Homo sapiens]
Length = 349
Score = 163 bits (413), Expect = 2e-40
Identities = 110/336 (32%), Positives = 166/336 (49%), Gaps = 41/336 (12%)
Query: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC--FSREGKLYCKNDFFRRFG 61
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+ R +G
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIRLYG 76
Query: 62 TKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLS 121
KCA C+ G S +D V +ARSKV+H+ CF C+ C++QL G+E + + E+ C+ D+
Sbjct: 77 IKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDE-FALREDGLFCRADH-- 133
Query: 122 SSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRR 181
++ SL + + + LQ A + S+ + +Q T R
Sbjct: 134 -DVVERASLGAGDPLSPLHPARPLQMAAE--------PISARQPALRPHVHKQPEKTTR- 183
Query: 182 GPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERR---- 237
RT + KQL TL+ +AA P+P ++EQL + TGL+ RVI+VWFQN+R K+++
Sbjct: 184 -VRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIM 242
Query: 238 MKQLSALGARRHAFFRSPRRMRPLGGRLDESEMLGSTPYTYYGDYQGD------YYAPGS 291
MKQL + P + G + + M+ ++P + G Q + Y P
Sbjct: 243 MKQLQQ---------QQPNDKTNIQG-MTGTPMVAASPERHDGGLQANPVEVQSYQPPWK 292
Query: 292 NYDFFAHGPPSQAQSPADSSFL--AASGPGSTPLGA 325
FA S PA + + GPGS G+
Sbjct: 293 VLSDFA--LQSDIDQPAFQQLVNFSEGGPGSNSTGS 326
>gi|30795196 LIM homeobox protein 2 [Homo sapiens]
Length = 406
Score = 163 bits (412), Expect = 3e-40
Identities = 93/271 (34%), Positives = 142/271 (52%), Gaps = 38/271 (14%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEK--CFSREGKLYCKNDFFRRFGT 62
CAGC I DR+ L +D+ WH++C++CCECK NL + CFS++G +YCK D++RRF
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
Query: 63 -KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKF-------V 114
+CA C GIS S++V +AR V+HLNCFTC CNK L+TG+ + D + +
Sbjct: 113 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
Query: 115 CKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDA--------------------LQDDPK 154
+ +Y + + + + + ++ +S A + P
Sbjct: 173 LQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPG 232
Query: 155 ETDNSTSSDKETANNENEEQN--------SGTKRRGPRTTIKAKQLETLKAAFAATPKPT 206
+ + + + NEN+ ++ S K + RT+ K QL T+K+ FA P
Sbjct: 233 PGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPD 292
Query: 207 RHIREQLAQETGLNMRVIQVWFQNRRSKERR 237
+QLAQ+TGL RV+QVWFQN R+K RR
Sbjct: 293 AKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 323
>gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens]
Length = 397
Score = 162 bits (409), Expect = 7e-40
Identities = 96/256 (37%), Positives = 140/256 (54%), Gaps = 25/256 (9%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEK--CFSREGKLYCKNDFFRRFGT 62
CAGC I DR+ L +D+ WH++C++CCECK L + CF+++G +YCK D++RRF
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSV 130
Query: 63 -KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY-- 119
+CA C GIS S++V +AR V+HL+CFTC CNK L+TG+ + + ++ C+ +
Sbjct: 131 QRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDH-FGMKDSLVYCRAHFET 189
Query: 120 ---------LSSSSL--KEGSL-----NSVSSCTDRSLSPDLQDALQDDPKETDNSTSSD 163
LS + L K G L N + AL D NS ++
Sbjct: 190 LLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNY-NSGCNE 248
Query: 164 KETANNENEEQ--NSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNM 221
E + + ++Q K + RT+ K QL T+K+ FA P +QLAQ+TGL
Sbjct: 249 NEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTK 308
Query: 222 RVIQVWFQNRRSKERR 237
RV+QVWFQN R+K RR
Sbjct: 309 RVLQVWFQNARAKFRR 324
>gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens]
Length = 388
Score = 162 bits (409), Expect = 7e-40
Identities = 96/256 (37%), Positives = 140/256 (54%), Gaps = 25/256 (9%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEK--CFSREGKLYCKNDFFRRFGT 62
CAGC I DR+ L +D+ WH++C++CCECK L + CF+++G +YCK D++RRF
Sbjct: 62 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSV 121
Query: 63 -KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY-- 119
+CA C GIS S++V +AR V+HL+CFTC CNK L+TG+ + + ++ C+ +
Sbjct: 122 QRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDH-FGMKDSLVYCRAHFET 180
Query: 120 ---------LSSSSL--KEGSL-----NSVSSCTDRSLSPDLQDALQDDPKETDNSTSSD 163
LS + L K G L N + AL D NS ++
Sbjct: 181 LLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNY-NSGCNE 239
Query: 164 KETANNENEEQ--NSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNM 221
E + + ++Q K + RT+ K QL T+K+ FA P +QLAQ+TGL
Sbjct: 240 NEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTK 299
Query: 222 RVIQVWFQNRRSKERR 237
RV+QVWFQN R+K RR
Sbjct: 300 RVLQVWFQNARAKFRR 315
>gi|21956641 ISL LIM homeobox 2 [Homo sapiens]
Length = 359
Score = 161 bits (408), Expect = 9e-40
Identities = 95/252 (37%), Positives = 132/252 (52%), Gaps = 37/252 (14%)
Query: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC--FSREGKLYCKNDFFRRFG 61
C GC I D+F+L V D WH C++C EC L E C F R+GK YCK D+ R FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 62 TKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY-- 119
KCA C G S SDLV +AR V+H+ CF C VC++QL G+E + + E++ +C+ D+
Sbjct: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDE-FSLREHELLCRADHGL 145
Query: 120 -----LSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDD-PKETDNSTSSDKETANNENEE 173
+ S G L Q AL+ K+T+ +T
Sbjct: 146 LLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPALRPHVHKQTEKTTR------------ 193
Query: 174 QNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRS 233
RT + KQL TL+ +AA P+P ++EQL + TGL+ RVI+VWFQN+R
Sbjct: 194 ---------VRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC 244
Query: 234 KERR----MKQL 241
K+++ MKQL
Sbjct: 245 KDKKKSILMKQL 256
>gi|50083287 LIM homeobox 8 [Homo sapiens]
Length = 356
Score = 157 bits (396), Expect = 2e-38
Identities = 81/236 (34%), Positives = 127/236 (53%), Gaps = 31/236 (13%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSE--KCFSREGKLYCKNDFFRRFGT 62
C C I+D++LL V D WH++C+ C C+T+L C+ ++ ++CK D+FRR+GT
Sbjct: 75 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 134
Query: 63 KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSS 122
+C+ C + I +D VR+A+ V+HL CF C C +QLSTGEE +++E K +C+ Y
Sbjct: 135 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHY--- 190
Query: 123 SSLKEGSLNSVSSCTDRSLSPDLQDALQDDPK-ETDNSTSSDKETANNENEEQNSGTKRR 181
D + D+ K E +N E A ++ N +
Sbjct: 191 ------------------------DCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAK 226
Query: 182 GPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERR 237
RT+ A QL+ ++A FA P ++LA+ TGL+ RVIQVWFQN R++ ++
Sbjct: 227 RARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKK 282
>gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens]
Length = 377
Score = 157 bits (396), Expect = 2e-38
Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 30/235 (12%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEK--CFSREGKLYCKNDFFRRFGT 62
C+ C ILDR+LL V + WH++C++C C+T+L ++ C+ + +++CK D+F RFGT
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGT 158
Query: 63 KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSS 122
KCA C + I SD VR+AR +HL CF C C +QLSTGEE +++E K +C+ Y
Sbjct: 159 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVLCRIHY--- 214
Query: 123 SSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRG 182
+ + ++ + L+ A+ P E D+ K
Sbjct: 215 ----DTMIENLKRAAENGNGLTLEGAV---PSEQDSQPKPAKRA---------------- 251
Query: 183 PRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERR 237
RT+ A+QL+ ++A FA P ++LA TGL+ RVIQVWFQN R++ ++
Sbjct: 252 -RTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens]
Length = 392
Score = 157 bits (396), Expect = 2e-38
Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 30/235 (12%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEK--CFSREGKLYCKNDFFRRFGT 62
C+ C ILDR+LL V + WH++C++C C+T+L ++ C+ + +++CK D+F RFGT
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGT 158
Query: 63 KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSS 122
KCA C + I SD VR+AR +HL CF C C +QLSTGEE +++E K +C+ Y
Sbjct: 159 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVLCRIHY--- 214
Query: 123 SSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRG 182
+ + ++ + L+ A+ P E D+ K
Sbjct: 215 ----DTMIENLKRAAENGNGLTLEGAV---PSEQDSQPKPAKRA---------------- 251
Query: 183 PRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERR 237
RT+ A+QL+ ++A FA P ++LA TGL+ RVIQVWFQN R++ ++
Sbjct: 252 -RTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|5803072 LIM domain only 4 [Homo sapiens]
Length = 165
Score = 110 bits (275), Expect = 2e-24
Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 8/136 (5%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSE---KCFSREGKLYCKNDFFRRFG 61
CAGC I DRFLL +D WH +C++C C+ L + C+++ G + C+ND+ R FG
Sbjct: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
Query: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
C+ C Q I S+LV +A+ V+HL CFTC C +L G+ + I+ + F C+ D
Sbjct: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLF-CEHD- 140
Query: 120 LSSSSLKEGSLNSVSS 135
++L G LNS+ S
Sbjct: 141 -RPTALINGHLNSLQS 155
>gi|4505005 LIM domain only 1 [Homo sapiens]
Length = 156
Score = 104 bits (259), Expect = 2e-22
Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 12/132 (9%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSE---KCFSREGKLYCKNDFFRRFG 61
CAGC R I DR+LL LD+ WH C++C C L E +++ + C+ D+ R FG
Sbjct: 24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG 83
Query: 62 T--KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
T CA C++ I ++V +AR V+HL+CF C +CN++ G++ + + N +C+ DY
Sbjct: 84 TTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFF-LKNNMILCQMDY 142
Query: 120 LSSSSLKEGSLN 131
+EG LN
Sbjct: 143 ------EEGQLN 148
>gi|21361802 LIM domain only 3 [Homo sapiens]
Length = 145
Score = 101 bits (252), Expect = 1e-21
Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 7/129 (5%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSE---KCFSREGKLYCKNDFFRRFG 61
CAGC R I DR+LL LD+ WH C++C C L E +++ + C+ D+ R FG
Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG 72
Query: 62 T--KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
CA C++ I ++V +A+ V+HL+CF C +CN++ G++ + + N +C+ DY
Sbjct: 73 VTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFF-LKNNMILCQTDY 131
Query: 120 LSSSSLKEG 128
+KEG
Sbjct: 132 -EEGLMKEG 139
>gi|47778935 LIM domain only 3 [Homo sapiens]
Length = 145
Score = 101 bits (252), Expect = 1e-21
Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 7/129 (5%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSE---KCFSREGKLYCKNDFFRRFG 61
CAGC R I DR+LL LD+ WH C++C C L E +++ + C+ D+ R FG
Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG 72
Query: 62 T--KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
CA C++ I ++V +A+ V+HL+CF C +CN++ G++ + + N +C+ DY
Sbjct: 73 VTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFF-LKNNMILCQTDY 131
Query: 120 LSSSSLKEG 128
+KEG
Sbjct: 132 -EEGLMKEG 139
>gi|4505001 LIM domain kinase 1 [Homo sapiens]
Length = 647
Score = 93.2 bits (230), Expect = 4e-19
Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
CA C + I D L L+ WH C +CC+C +LS + + ++G+L+CK D++ R+G C
Sbjct: 25 CASCGQRIYDGQYLQALNADWHADCFRCCDCSASLSHQYYEKDGQLFCKKDYWARYGESC 84
Query: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
GC++ I+ LV A +H CF C+ C + G+ +++ +K C Y
Sbjct: 85 HGCSEQIT-KGLVMVAGELKYHPECFICLTCGTFIGDGDTYTLVEHSKLYCGHCY 138
>gi|214832219 LIM domain only 2 isoform 2 [Homo sapiens]
Length = 158
Score = 87.0 bits (214), Expect = 3e-17
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 2 MVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSE---KCFSREGKLYCKNDFFR 58
++ C GC++ I DR+ L +D+ WH C+ C C L E + + + G+ C+ D+ R
Sbjct: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
Query: 59 RFGTK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK 116
FG CA C + I ++ + + KV+HL CF C C K G+ Y++ + VC+
Sbjct: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YLLINSDIVCE 145
Query: 117 DD 118
D
Sbjct: 146 QD 147
>gi|214832121 LIM domain only 2 isoform 2 [Homo sapiens]
Length = 158
Score = 87.0 bits (214), Expect = 3e-17
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 2 MVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSE---KCFSREGKLYCKNDFFR 58
++ C GC++ I DR+ L +D+ WH C+ C C L E + + + G+ C+ D+ R
Sbjct: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
Query: 59 RFGTK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK 116
FG CA C + I ++ + + KV+HL CF C C K G+ Y++ + VC+
Sbjct: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YLLINSDIVCE 145
Query: 117 DD 118
D
Sbjct: 146 QD 147
>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
Length = 227
Score = 87.0 bits (214), Expect = 3e-17
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 2 MVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSE---KCFSREGKLYCKNDFFR 58
++ C GC++ I DR+ L +D+ WH C+ C C L E + + + G+ C+ D+ R
Sbjct: 96 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 155
Query: 59 RFGTK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK 116
FG CA C + I ++ + + KV+HL CF C C K G+ Y++ + VC+
Sbjct: 156 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YLLINSDIVCE 214
Query: 117 DD 118
D
Sbjct: 215 QD 216
>gi|7662330 actin binding LIM protein family, member 3 [Homo
sapiens]
Length = 683
Score = 85.9 bits (211), Expect = 6e-17
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 4 HCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTK 63
HCAGC+ I L LD+ WH+ C +C C L+ + S++G YC++D+ +FG K
Sbjct: 150 HCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHAQFGIK 209
Query: 64 CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKF--VCKDDYLS 121
C C + I S V +A K +H C C+ C++ + GEE+Y+ + +CK +
Sbjct: 210 CETCDRYI--SGRVLEAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARA 267
Query: 122 SSSLKEGSLNSVS 134
LK + S
Sbjct: 268 EKKLKHRRTSETS 280
Score = 55.1 bits (131), Expect = 1e-07
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 17 LLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLY-CKNDFFRRFGTKCAGCAQGISPSD 75
++ V + +HI+C C C L++ F + + Y C D+ + +GT+C C I+
Sbjct: 34 VVRVHNNHFHIRCFTCQVCGCGLAQSGFFFKNQEYICTQDYQQLYGTRCDSCRDFITGE- 92
Query: 76 LVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSSLKEGSLNSVSS 135
V A + +H CF C +C K G+++ + VC+ S +S K + S
Sbjct: 93 -VISALGRTYHPKCFVCSLCRKPFPIGDKV-TFSGKECVCQTCSQSMASSKPIKIRGPSH 150
Query: 136 C 136
C
Sbjct: 151 C 151
>gi|51173715 actin-binding LIM protein 1 isoform c [Homo sapiens]
Length = 746
Score = 82.0 bits (201), Expect = 9e-16
Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 4 HCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTK 63
+CAGC R I + L LD+ WH+ C +C C L+ + S++G YC+ D+ FG K
Sbjct: 165 NCAGCGRDIKNGQALLALDKQWHLGCFKCKSCGKVLTGEYISKDGAPYCEKDYQGLFGVK 224
Query: 64 CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYV 107
C C Q I+ V +A K +H +C C CN+ + GEE+Y+
Sbjct: 225 CEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEMYL 266
Score = 67.4 bits (163), Expect = 2e-11
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 2 MVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEK-CFSREGKLYCKNDFFRRF 60
++HC C P +L V + +HIKC C C +L++ F + G+ C D+ R +
Sbjct: 36 VIHCHKCGEPCKGE-VLRVQTKHFHIKCFTCKVCGCDLAQGGFFIKNGEYLCTLDYQRMY 94
Query: 61 GTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEEL 105
GT+C GC + + V A K +H NCF C +C + G+ +
Sbjct: 95 GTRCHGCGEFVEGE--VVTALGKTYHPNCFACTICKRPFPPGDRV 137
Score = 37.0 bits (84), Expect = 0.032
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 77 VRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
V + ++K FH+ CFTC VC L+ G + I +++C DY
Sbjct: 50 VLRVQTKHFHIKCFTCKVCGCDLAQGG--FFIKNGEYLCTLDY 90
>gi|51173713 actin-binding LIM protein 1 isoform b [Homo sapiens]
Length = 718
Score = 82.0 bits (201), Expect = 9e-16
Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 4 HCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTK 63
+CAGC R I + L LD+ WH+ C +C C L+ + S++G YC+ D+ FG K
Sbjct: 165 NCAGCGRDIKNGQALLALDKQWHLGCFKCKSCGKVLTGEYISKDGAPYCEKDYQGLFGVK 224
Query: 64 CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYV 107
C C Q I+ V +A K +H +C C CN+ + GEE+Y+
Sbjct: 225 CEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEMYL 266
Score = 67.4 bits (163), Expect = 2e-11
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 2 MVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEK-CFSREGKLYCKNDFFRRF 60
++HC C P +L V + +HIKC C C +L++ F + G+ C D+ R +
Sbjct: 36 VIHCHKCGEPCKGE-VLRVQTKHFHIKCFTCKVCGCDLAQGGFFIKNGEYLCTLDYQRMY 94
Query: 61 GTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEEL 105
GT+C GC + + V A K +H NCF C +C + G+ +
Sbjct: 95 GTRCHGCGEFVEGE--VVTALGKTYHPNCFACTICKRPFPPGDRV 137
Score = 37.0 bits (84), Expect = 0.032
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 77 VRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
V + ++K FH+ CFTC VC L+ G + I +++C DY
Sbjct: 50 VLRVQTKHFHIKCFTCKVCGCDLAQGG--FFIKNGEYLCTLDY 90
>gi|51173711 actin-binding LIM protein 1 isoform a [Homo sapiens]
Length = 778
Score = 82.0 bits (201), Expect = 9e-16
Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 4 HCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTK 63
+CAGC R I + L LD+ WH+ C +C C L+ + S++G YC+ D+ FG K
Sbjct: 225 NCAGCGRDIKNGQALLALDKQWHLGCFKCKSCGKVLTGEYISKDGAPYCEKDYQGLFGVK 284
Query: 64 CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYV 107
C C Q I+ V +A K +H +C C CN+ + GEE+Y+
Sbjct: 285 CEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEMYL 326
Score = 67.4 bits (163), Expect = 2e-11
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 2 MVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEK-CFSREGKLYCKNDFFRRF 60
++HC C P +L V + +HIKC C C +L++ F + G+ C D+ R +
Sbjct: 96 VIHCHKCGEPCKGE-VLRVQTKHFHIKCFTCKVCGCDLAQGGFFIKNGEYLCTLDYQRMY 154
Query: 61 GTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEEL 105
GT+C GC + + V A K +H NCF C +C + G+ +
Sbjct: 155 GTRCHGCGEFVEGE--VVTALGKTYHPNCFACTICKRPFPPGDRV 197
Score = 37.0 bits (84), Expect = 0.032
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 77 VRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
V + ++K FH+ CFTC VC L+ G + I +++C DY
Sbjct: 110 VLRVQTKHFHIKCFTCKVCGCDLAQGG--FFIKNGEYLCTLDY 150
>gi|42741675 PDZ and LIM domain 7 isoform 2 [Homo sapiens]
Length = 423
Score = 74.7 bits (182), Expect = 1e-13
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCF-SREGKLYCKNDFFRRFGTK 63
CA C++ I +++ L WH+ C C CKT + + F EG YC+ D+ + FGTK
Sbjct: 307 CAKCKKKITGE-IMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGVPYCERDYEKMFGTK 365
Query: 64 CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLS 121
C GC I D +A +H CF C +C Q++ + + +++ +CK S
Sbjct: 366 CHGCDFKIDAGDRFLEALGFSWHDTCFVCAIC--QINLEGKTFYSKKDRPLCKSHAFS 421
Score = 51.6 bits (122), Expect = 1e-06
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSRE-GKLYCKNDFFRRFGTK 63
C C + I R+L+ L A+H + C +C L E F E G ++C + R+
Sbjct: 248 CHQCHKVIRGRYLV-ALGHAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPPCYDVRYAPS 306
Query: 64 CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
CA C + I+ + A +H++CFTC C + + ++E C+ DY
Sbjct: 307 CAKCKKKITGE--IMHALKMTWHVHCFTCAACKTPIR--NRAFYMEEGVPYCERDY 358
>gi|11496885 PDZ and LIM domain 7 isoform 1 [Homo sapiens]
Length = 457
Score = 74.7 bits (182), Expect = 1e-13
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCF-SREGKLYCKNDFFRRFGTK 63
CA C++ I +++ L WH+ C C CKT + + F EG YC+ D+ + FGTK
Sbjct: 341 CAKCKKKITGE-IMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGVPYCERDYEKMFGTK 399
Query: 64 CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLS 121
C GC I D +A +H CF C +C Q++ + + +++ +CK S
Sbjct: 400 CHGCDFKIDAGDRFLEALGFSWHDTCFVCAIC--QINLEGKTFYSKKDRPLCKSHAFS 455
Score = 51.6 bits (122), Expect = 1e-06
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSRE-GKLYCKNDFFRRFGTK 63
C C + I R+L+ L A+H + C +C L E F E G ++C + R+
Sbjct: 282 CHQCHKVIRGRYLV-ALGHAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPPCYDVRYAPS 340
Query: 64 CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
CA C + I+ + A +H++CFTC C + + ++E C+ DY
Sbjct: 341 CAKCKKKITGE--IMHALKMTWHVHCFTCAACKTPIR--NRAFYMEEGVPYCERDY 392
>gi|194272207 actin binding LIM protein family, member 2 isoform 7
[Homo sapiens]
Length = 470
Score = 74.3 bits (181), Expect = 2e-13
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
C GC I + L LD+ WH+ C +C C L+ + S++G YC+ D+ +FG +C
Sbjct: 153 CGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLLNAEYISKDGLPYCEADYHAKFGIRC 212
Query: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYV 107
C + I + V +A K +H +C C+ C + + GEE+Y+
Sbjct: 213 DSCEKYI--TGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYL 253
Score = 63.9 bits (154), Expect = 2e-10
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 17 LLNVLDRAWHIKCVQCCECKTNLSEK-CFSREGKLYCKNDFFRRFGTKCAGCAQGISPSD 75
+L V D+ +HIKC C C +L+E F R+G+ C D+ R +GT+C C Q I
Sbjct: 35 VLRVQDKYFHIKCFVCKACGCDLAEGGFFVRQGEYICTLDYQRLYGTRCFSCDQFIEGE- 93
Query: 76 LVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYL-----SSSSLKEGSL 130
V A K +H +CF C VC G+ + + + +C+ L SS+ L +G L
Sbjct: 94 -VVSALGKTYHPDCFVCAVCRLPFPPGDRV-TFNGKECMCQKCSLPVSVGSSAHLSQG-L 150
Query: 131 NSVSSC 136
S C
Sbjct: 151 RSCGGC 156
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,192,715
Number of Sequences: 37866
Number of extensions: 1144993
Number of successful extensions: 8818
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 501
Number of HSP's that attempted gapping in prelim test: 6438
Number of HSP's gapped (non-prelim): 2482
length of query: 402
length of database: 18,247,518
effective HSP length: 105
effective length of query: 297
effective length of database: 14,271,588
effective search space: 4238661636
effective search space used: 4238661636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.