Guide to the Human Genome
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Name: ISL1 Sequence: fasta or formatted (349aa) NCBI GI: 115387114
Description:

islet-1

Referenced in:

Homeobox and Related Proteins
LIM Domain Proteins
Pancreas and Insulin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         26           2
 C cysteine            4.6         16           1
 D aspartate           6.0         21           1
 E glutamate           4.9         17           1
 F phenylalanine       2.9         10           1
 G glycine             5.7         20           2
 H histidine           2.6          9           1
 I isoleucine          4.0         14           1
 K lysine              6.0         21           3
 L leucine             7.7         27           1
 M methionine          3.4         12           2
 N asparagine          3.4         12           1
 P proline             7.4         26           2
 Q glutamine           6.9         24           4
 R arginine            6.9         24           1
 S serine              7.2         25           2
 T threonine           3.7         13           2
 V valine              6.0         21           2
 W tryptophan          0.9          3           1
 Y tyrosine            2.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   islet-1 
ISL2                  0.751   ISL LIM homeobox 2 
LHX9                  0.216   LIM homeobox 9 isoform 1 
LHX9                  0.216   LIM homeobox 9 isoform 2 
LMX1A                 0.204   LIM homeobox transcription factor 1, alpha isoform a...
LHX2                  0.203   LIM homeobox protein 2 
LMX1B                 0.201   LIM homeobox transcription factor 1, beta 
LHX1                  0.200   LIM homeobox protein 1 
LHX5                  0.197   LIM homeobox protein 5 
LHX3                  0.196   LIM homeobox protein 3 isoform b 
LHX3                  0.194   LIM homeobox protein 3 isoform a 
LHX8                  0.193   LIM homeobox 8 
LHX6                  0.190   LIM homeobox protein 6 isoform 2 
LHX6                  0.190   LIM homeobox protein 6 isoform 1 
LHX4                  0.190   LIM homeobox protein 4 
LMO4                  0.116   LIM domain only 4 
LMO3                  0.110   LIM domain only 3 
LMO3                  0.110   LIM domain only 3 
LMO1                  0.109   LIM domain only 1 
LMO2                  0.091   LIM domain only 2 isoform 2 
LMO2                  0.091   LIM domain only 2 isoform 2 
LMO2                  0.091   LIM domain only 2 isoform 1 
LIMK1                 0.079   LIM domain kinase 1 
ABLIM1                0.077   actin-binding LIM protein 1 isoform c 
ABLIM1                0.077   actin-binding LIM protein 1 isoform b 
ABLIM1                0.077   actin-binding LIM protein 1 isoform a 
LIMK2                 0.073   LIM domain kinase 2 isoform 2a 
ABLIM3                0.070   actin binding LIM protein family, member 3 
ABLIM2                0.066   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.066   actin binding LIM protein family, member 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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