Guide to the Human Genome
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Name: LOC100288436 Sequence: fasta or formatted (210aa) NCBI GI: 239743698
Description:

PREDICTED: hypothetical protein XP_002342928

Not currently referenced in the text

Other entries for this name:
alt mRNA {210aa} PREDICTED: similar to solute carrier family 4 (anion exchanger), ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8          8           2
 C cysteine            1.9          4           1
 D aspartate           3.8          8           1
 E glutamate          15.7         33          11
 F phenylalanine       2.4          5           1
 G glycine             3.8          8           2
 H histidine           3.8          8           1
 I isoleucine          2.9          6           1
 K lysine             11.9         25           4
 L leucine             7.1         15           1
 M methionine          4.3          9           1
 N asparagine          4.8         10           1
 P proline             8.1         17           2
 Q glutamine           4.3          9           1
 R arginine            2.9          6           1
 S serine              6.2         13           1
 T threonine           6.7         14           2
 V valine              3.8          8           1
 W tryptophan          1.0          2           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342928 
LOC100293631          1.000   PREDICTED: similar to solute carrier family 4 (anio...
LOC100288436          1.000   PREDICTED: similar to solute carrier family 4 (anio...
SLC4A1AP              0.642   solute carrier family 4 (anion exchanger), member 1...
ACIN1                 0.068   apoptotic chromatin condensation inducer 1 
MYT1                  0.054   myelin transcription factor 1 
PELP1                 0.054   proline, glutamic acid and leucine rich protein 1 [...
PRKCSH                0.054   protein kinase C substrate 80K-H isoform 2 
MYST4                 0.051   MYST histone acetyltransferase (monocytic leukemia)...
AEBP2                 0.051   AE binding protein 2 isoform b 
AEBP2                 0.051   AE binding protein 2 isoform a 
CNGB1                 0.049   cyclic nucleotide gated channel beta 1 isoform a [H...
WDR87                 0.049   NYD-SP11 protein 
LOC100294088          0.049   PREDICTED: hypothetical protein, partial 
SLC24A1               0.049   solute carrier family 24 (sodium/potassium/calcium ex...
CCDC108               0.049   coiled-coil domain containing 108 isoform 1 
AP3D1                 0.046   adaptor-related protein complex 3, delta 1 subunit ...
PRKCSH                0.046   protein kinase C substrate 80K-H isoform 1 
PODXL2                0.046   podocalyxin-like 2 
TTBK1                 0.046   tau tubulin kinase 1 
PCLO                  0.046   piccolo isoform 2 
PCLO                  0.046   piccolo isoform 1 
CALD1                 0.046   caldesmon 1 isoform 1 
C3orf44               0.044   hypothetical protein LOC131831 
DAXX                  0.044   death-domain associated protein isoform a 
DAXX                  0.044   death-domain associated protein isoform a 
DAXX                  0.044   death-domain associated protein isoform b 
RANGAP1               0.041   Ran GTPase activating protein 1 
EIF5B                 0.041   eukaryotic translation initiation factor 5B 
LOC728792             0.041   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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