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Search of human proteins with 239743668
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743668 PREDICTED: hypothetical protein XP_002342944 [Homo
sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743668 PREDICTED: hypothetical protein XP_002342944 [Homo ... 281 1e-76
gi|239740967 PREDICTED: hypothetical protein XP_002342051 [Homo ... 268 7e-73
gi|239745348 PREDICTED: hypothetical protein XP_002343431 [Homo ... 265 6e-72
gi|239745350 PREDICTED: hypothetical protein XP_002343443 [Homo ... 68 2e-12
gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Ho... 62 1e-10
gi|239755744 PREDICTED: similar to Putative ATP-dependent RNA he... 59 9e-10
gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 59 9e-10
gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 59 9e-10
gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 57 3e-09
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens] 33 0.087
gi|32455248 phosphoinositide-3-kinase, regulatory subunit 1 (alp... 31 0.33
gi|105990532 apolipoprotein B precursor [Homo sapiens] 29 1.3
gi|21040343 hemochromatosis protein isoform 4 precursor [Homo sa... 29 1.3
gi|27764882 leprecan-like 1 isoform a [Homo sapiens] 28 2.2
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi... 28 2.2
gi|4502187 aquaporin 7 [Homo sapiens] 28 2.2
gi|31542246 kelch-like 36 [Homo sapiens] 28 2.2
gi|23510451 N-acylaminoacyl-peptide hydrolase [Homo sapiens] 28 2.8
gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens] 27 3.7
gi|153945765 mitogen-activated protein kinase kinase kinase 1 [H... 27 4.8
gi|239754558 PREDICTED: similar to hCG1779533 [Homo sapiens] 27 4.8
gi|239743151 PREDICTED: similar to hCG1779533 [Homo sapiens] 27 4.8
gi|239508809 PREDICTED: similar to hCG1779533 [Homo sapiens] 27 4.8
gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Hom... 27 6.3
gi|31543657 StAR-related lipid transfer (START) domain containin... 27 6.3
gi|55956910 meningioma 1 [Homo sapiens] 27 6.3
gi|156616301 kelch-like 32 [Homo sapiens] 27 6.3
gi|148922920 DENN/MADD domain containing 4B [Homo sapiens] 27 6.3
gi|114431248 hypothetical protein LOC205717 [Homo sapiens] 26 8.2
gi|122937456 T-box 18 [Homo sapiens] 26 8.2
>gi|239743668 PREDICTED: hypothetical protein XP_002342944 [Homo
sapiens]
Length = 133
Score = 281 bits (718), Expect = 1e-76
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MSESINFSDNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHNLVSVPSVAESLHHP 60
MSESINFSDNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHNLVSVPSVAESLHHP
Sbjct: 1 MSESINFSDNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHNLVSVPSVAESLHHP 60
Query: 61 EITFLTAFCLPSFTRSRPLPDRQLHHCLALRPSFALPAGDGVCHGPDLQGSCYKGETQKS 120
EITFLTAFCLPSFTRSRPLPDRQLHHCLALRPSFALPAGDGVCHGPDLQGSCYKGETQKS
Sbjct: 61 EITFLTAFCLPSFTRSRPLPDRQLHHCLALRPSFALPAGDGVCHGPDLQGSCYKGETQKS 120
Query: 121 VESRVLPGPRHRH 133
VESRVLPGPRHRH
Sbjct: 121 VESRVLPGPRHRH 133
>gi|239740967 PREDICTED: hypothetical protein XP_002342051 [Homo
sapiens]
Length = 133
Score = 268 bits (686), Expect = 7e-73
Identities = 128/133 (96%), Positives = 129/133 (96%)
Query: 1 MSESINFSDNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHNLVSVPSVAESLHHP 60
MSESINFS NLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDH LVSVPSVAESLHHP
Sbjct: 1 MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP 60
Query: 61 EITFLTAFCLPSFTRSRPLPDRQLHHCLALRPSFALPAGDGVCHGPDLQGSCYKGETQKS 120
EITFLTAFCLPSFTRSRPLPDRQLHHCLAL PSFALPAGDGVCHGP LQGSCYKGETQ+S
Sbjct: 61 EITFLTAFCLPSFTRSRPLPDRQLHHCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES 120
Query: 121 VESRVLPGPRHRH 133
VESRVLPGPRHRH
Sbjct: 121 VESRVLPGPRHRH 133
>gi|239745348 PREDICTED: hypothetical protein XP_002343431 [Homo
sapiens]
Length = 133
Score = 265 bits (678), Expect = 6e-72
Identities = 127/133 (95%), Positives = 128/133 (96%)
Query: 1 MSESINFSDNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHNLVSVPSVAESLHHP 60
MSESINFS NLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDH LVSVPSVAESLHHP
Sbjct: 1 MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP 60
Query: 61 EITFLTAFCLPSFTRSRPLPDRQLHHCLALRPSFALPAGDGVCHGPDLQGSCYKGETQKS 120
EITFLTAFCLPSFTRSRPLPDRQL HCLAL PSFALPAGDGVCHGP LQGSCYKGETQ+S
Sbjct: 61 EITFLTAFCLPSFTRSRPLPDRQLQHCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES 120
Query: 121 VESRVLPGPRHRH 133
VESRVLPGPRHRH
Sbjct: 121 VESRVLPGPRHRH 133
>gi|239745350 PREDICTED: hypothetical protein XP_002343443 [Homo
sapiens]
Length = 45
Score = 68.2 bits (165), Expect = 2e-12
Identities = 32/34 (94%), Positives = 33/34 (97%)
Query: 23 MPGMPFPSIRSPELQKTTADLDHNLVSVPSVAES 56
MPGMPFPSIRSPELQKTTADLDH LVSVPSVAE+
Sbjct: 1 MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAEA 34
>gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Homo
sapiens]
Length = 906
Score = 62.4 bits (150), Expect = 1e-10
Identities = 37/76 (48%), Positives = 43/76 (56%), Gaps = 10/76 (13%)
Query: 1 MSESINFSDNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHNLVSVPSVAESLHHP 60
MSE INFSDNLG RCVVM GMPFP+IRS ELQ+ A LD L P A HP
Sbjct: 779 MSEGINFSDNLG------RCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQA----HP 828
Query: 61 EITFLTAFCLPSFTRS 76
+ C+ + +S
Sbjct: 829 GKALVENLCMKAVNQS 844
>gi|239755744 PREDICTED: similar to Putative ATP-dependent RNA
helicase DDX11-like protein [Homo sapiens]
Length = 223
Score = 59.3 bits (142), Expect = 9e-10
Identities = 33/54 (61%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 1 MSESINFSDNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHNLVSVPSVA 54
MSE INFSDNLG RCVVM GMPFP+IRS ELQ+ A LD L P A
Sbjct: 96 MSEGINFSDNLG------RCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQA 143
>gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 2 [Homo sapiens]
Length = 856
Score = 59.3 bits (142), Expect = 9e-10
Identities = 33/54 (61%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 1 MSESINFSDNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHNLVSVPSVA 54
MSE INFSDNLG RCVVM GMPFP+IRS ELQ+ A LD L P A
Sbjct: 729 MSEGINFSDNLG------RCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQA 776
>gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 1 [Homo sapiens]
Length = 906
Score = 59.3 bits (142), Expect = 9e-10
Identities = 33/54 (61%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 1 MSESINFSDNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHNLVSVPSVA 54
MSE INFSDNLG RCVVM GMPFP+IRS ELQ+ A LD L P A
Sbjct: 779 MSEGINFSDNLG------RCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQA 826
>gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 3 [Homo sapiens]
Length = 970
Score = 57.4 bits (137), Expect = 3e-09
Identities = 32/51 (62%), Positives = 34/51 (66%), Gaps = 6/51 (11%)
Query: 1 MSESINFSDNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHNLVSVP 51
MSE INFSDNLG RCVVM GMPFP+IRS ELQ+ A LD L P
Sbjct: 779 MSEGINFSDNLG------RCVVMVGMPFPNIRSAELQEKMAYLDQTLSPRP 823
>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
Length = 981
Score = 32.7 bits (73), Expect = 0.087
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 61 EITFLTAFCLPSFTRSRPLPDRQLHHCLALRPSFALPAGDGVCHGPDLQGSCYKG 115
E+T+ A L + +RP P + H C A A PA G P+ +CY G
Sbjct: 686 ELTWALALALAAVAAARPRPPTE-HACWAKLMRLACPAPSGKSEVPERPNNCYAG 739
>gi|32455248 phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
isoform 1 [Homo sapiens]
Length = 724
Score = 30.8 bits (68), Expect = 0.33
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 15 LSPPRCVVMPGMPFPSIRSPELQKTTADLDHNLVSVPSVAESLHHPEI 62
+SPP P P P +P KT AD++ +++P +AE P+I
Sbjct: 82 ISPPTPKPRPPRPLPV--APGSSKTEADVEQQALTLPDLAEQFAPPDI 127
>gi|105990532 apolipoprotein B precursor [Homo sapiens]
Length = 4563
Score = 28.9 bits (63), Expect = 1.3
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 26 MPFPSIRSPELQKTTADLDHNLVSVPSVAESLHHPEITFLTAFCLPSFT 74
+P +R P +Q DL + + +PS + PE T L F +PSFT
Sbjct: 2619 VPLTDLRIPSVQINFKDLKN--IKIPSRFST---PEFTILNTFHIPSFT 2662
>gi|21040343 hemochromatosis protein isoform 4 precursor [Homo
sapiens]
Length = 256
Score = 28.9 bits (63), Expect = 1.3
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 44 DHNLVSVPSVAESLHHPEITFLTAFC-----LPSFTRSRPLPDRQLHHCLALRPSFALPA 98
+HN VP + + HH + T C P + L D+Q P LP
Sbjct: 108 NHNHSKVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPN 167
Query: 99 GDGVCHG 105
GDG G
Sbjct: 168 GDGTYQG 174
>gi|27764882 leprecan-like 1 isoform a [Homo sapiens]
Length = 708
Score = 28.1 bits (61), Expect = 2.2
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 70 LPSFTRSRPLPDRQLHHCLALRPSFALPAGDGV-CHGPDLQGSCYKGETQKSVESRVLPG 128
L S R R + R HC A P P G+G P + + +S E++ L G
Sbjct: 71 LRSHRRLREIRTRCARHCAARHPLPPPPPGEGPGAELPLFRSLLGRARCYRSCETQRLGG 130
Query: 129 PRHRH 133
P RH
Sbjct: 131 PASRH 135
>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapiens]
Length = 1343
Score = 28.1 bits (61), Expect = 2.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 5 INFSDNLGQLLSPPRCVVMPGMPFPS 30
++ DNL +LSPP+ + P P PS
Sbjct: 1022 LSLQDNLQHMLSPPQITIGPQRPAPS 1047
>gi|4502187 aquaporin 7 [Homo sapiens]
Length = 342
Score = 28.1 bits (61), Expect = 2.2
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 11 LGQLLSPPRCVVMPGMPFPSIRSP-ELQKTTADLDHNLVSVPSVAESLHHPEITFLTAFC 69
LG L +V G P R P +L+ + A DH + +P + H P I+ LT
Sbjct: 263 LGAYLGGIIYLVFIGSTIP--REPLKLEDSVAYEDHGITVLPKMGS--HEPTISPLTPVS 318
Query: 70 LPSFTRSRPLPDRQLHHCLAL 90
+ RS P LH +AL
Sbjct: 319 VSPANRSSVHPAPPLHESMAL 339
>gi|31542246 kelch-like 36 [Homo sapiens]
Length = 616
Score = 28.1 bits (61), Expect = 2.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 73 FTRSRPLPDRQLHHCLALRPSFALPAG 99
+ + PLP R+ HHC+A+ F AG
Sbjct: 325 WVKETPLPARRSHHCVAVLGGFIFIAG 351
>gi|23510451 N-acylaminoacyl-peptide hydrolase [Homo sapiens]
Length = 732
Score = 27.7 bits (60), Expect = 2.8
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 5 INFSDNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHNLVS-VPSVAESL 57
IN + LG P CVV G PF S P+L LD + + +P V L
Sbjct: 614 INIASMLGSTDIPDWCVVEAGFPFSSDCLPDLSVWAEMLDKSPIRYIPQVKTPL 667
>gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]
Length = 1910
Score = 27.3 bits (59), Expect = 3.7
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 27 PFPSIRSPELQKTTADLDHN----LVSVPSVAESLHHPEITFLTAFCLPSFTRSRPLPDR 82
P S+ + L K + L +S+P + SL PE T+++ C P + S P R
Sbjct: 1580 PSSSLEAEPLSKEESSLGEESFLPALSMPRASRSLSKPEPTYVSPPC-PRLSHSTPGKSR 1638
Query: 83 -QLHHCLALRPS 93
Q + C A P+
Sbjct: 1639 GQTYICQACTPT 1650
>gi|153945765 mitogen-activated protein kinase kinase kinase 1 [Homo
sapiens]
Length = 1512
Score = 26.9 bits (58), Expect = 4.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 71 PSFTRSRPLPDRQLHHCLALRPS 93
P FT+SRPLP +H RP+
Sbjct: 1044 PVFTQSRPLPSSNIHRPKPSRPT 1066
>gi|239754558 PREDICTED: similar to hCG1779533 [Homo sapiens]
Length = 212
Score = 26.9 bits (58), Expect = 4.8
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 62 ITFLTAFCLPSFTRSRPLPDRQLHHCLAL-RPSFALPAGDGVCHGPDL 108
I +LTA T S+ P QLH L RPS LPA GP+L
Sbjct: 54 IPYLTAVSADEATASQQPPQAQLHRYNGLFRPSSCLPA---FSPGPEL 98
>gi|239743151 PREDICTED: similar to hCG1779533 [Homo sapiens]
Length = 213
Score = 26.9 bits (58), Expect = 4.8
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 62 ITFLTAFCLPSFTRSRPLPDRQLHHCLAL-RPSFALPAGDGVCHGPDL 108
I +LTA T S+ P QLH L RPS LPA GP+L
Sbjct: 55 IPYLTAVSADEATASQQPPQAQLHRYNGLFRPSSCLPA---FSPGPEL 99
>gi|239508809 PREDICTED: similar to hCG1779533 [Homo sapiens]
Length = 213
Score = 26.9 bits (58), Expect = 4.8
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 62 ITFLTAFCLPSFTRSRPLPDRQLHHCLAL-RPSFALPAGDGVCHGPDL 108
I +LTA T S+ P QLH L RPS LPA GP+L
Sbjct: 55 IPYLTAVSADEATASQQPPQAQLHRYNGLFRPSSCLPA---FSPGPEL 99
>gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Homo
sapiens]
Length = 1249
Score = 26.6 bits (57), Expect = 6.3
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 1 MSESINFSDNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHN 46
+SE ++FSD+ R V+ G+PFP+++ +++ DH+
Sbjct: 765 VSEGLDFSDDNA------RAVITIGIPFPNVKDLQVELKRQYNDHH 804
>gi|31543657 StAR-related lipid transfer (START) domain containing
3 [Homo sapiens]
Length = 445
Score = 26.6 bits (57), Expect = 6.3
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 37 QKTTADLDHNLVSVPSVAESLHHPEITFLTAFCLPSFTRSRPLPDRQLHHCL 88
++ T DL+ +L +V S+ SL H + L++ LP + R + D + CL
Sbjct: 6 RELTRDLERSLPAVASLGSSLSHSQ--SLSSHLLPPPEKRRAISDVRRTFCL 55
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 26.6 bits (57), Expect = 6.3
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 57 LHHPEITFLTAFCLPSFTRSRP----LPDRQLHHC-------LALRPSFALPAGDGVCHG 105
+H E + + P F+ P P+++L H +A RP F P GV
Sbjct: 411 IHRLENRSMHPYSEPVFSMQHPPPQQAPNQRLQHFDAPPYMNVAKRPRFDFPGSAGVDRC 470
Query: 106 PDLQGSCYKGETQKSVESRVLPG 128
GS + G + PG
Sbjct: 471 ASWNGSMHNGALDNHLSPSAYPG 493
>gi|156616301 kelch-like 32 [Homo sapiens]
Length = 620
Score = 26.6 bits (57), Expect = 6.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 70 LPSFTRSRPLPDRQLHHCLALRPSFALPAGDGVCH 104
+ +++ P+P + HHC+A+ F AG V H
Sbjct: 323 IANWSELAPMPVGRSHHCVAVMGDFLFVAGGEVEH 357
>gi|148922920 DENN/MADD domain containing 4B [Homo sapiens]
Length = 1496
Score = 26.6 bits (57), Expect = 6.3
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 24 PGMPFPSIRSPELQKTTADLDHNLVSVPSVAESLHHPEITFLTAFCLPSFTRSRPLPDRQ 83
P P P R+ + K + +VP + L CLP++ RS P +
Sbjct: 734 PSSPAPR-RTKQEMKVAQRMAQKSAAVPELWARCLLGHCYGLWFLCLPAYVRSAPSRVQA 792
Query: 84 LH---HCLALRPSFALPAGDGVCHGPDLQGSCYKGETQKSV 121
LH H L S + D VC+ +Q + G+ SV
Sbjct: 793 LHTAYHVLRQMESGKVVLPDEVCYRVLMQLCSHYGQPVLSV 833
>gi|114431248 hypothetical protein LOC205717 [Homo sapiens]
Length = 2245
Score = 26.2 bits (56), Expect = 8.2
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 6 NFSDNLGQLLSPPRCVVMPGMPFPSIRS-PELQKTTADLDH-NLVSV-PSVAE-----SL 57
+ ++ G +LSPPR V FP + P + T + L + N+ S+ P +A S
Sbjct: 2147 SLNNRFGSILSPPRPVGFAQPSFPLLPDMPPMHMTNSHLSNFNMTSLFPEIATVLPDGSA 2206
Query: 58 HHPEITFLTAFCLPSFTRSRPLPDRQLHHCL 88
P +T + S +S P + H L
Sbjct: 2207 MSPLLTIANSSASDSSKQSSNRPAHNISHIL 2237
>gi|122937456 T-box 18 [Homo sapiens]
Length = 607
Score = 26.2 bits (56), Expect = 8.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 16 SPPRCVVMPGMPFPSIRSPELQKTTADL 43
SP R + PG P PS ++P + A+L
Sbjct: 121 SPARSLARPGTPLPSPQAPRVDLQGAEL 148
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,465,639
Number of Sequences: 37866
Number of extensions: 319239
Number of successful extensions: 832
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 40
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.