Guide to the Human Genome
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Name: LOC100290742 Sequence: fasta or formatted (175aa) NCBI GI: 239748232
Description:

PREDICTED: hypothetical protein XP_002346598

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.1         23           5
 C cysteine            3.4          6           1
 D aspartate           1.7          3           1
 E glutamate           4.0          7           2
 F phenylalanine       0.6          1           1
 G glycine            10.3         18           2
 H histidine           2.9          5           1
 I isoleucine          0.0          0           0
 K lysine              2.9          5           2
 L leucine            12.0         21           3
 M methionine          1.7          3           1
 N asparagine          0.0          0           0
 P proline            10.3         18           2
 Q glutamine           2.3          4           1
 R arginine            9.1         16           2
 S serine              8.0         14           2
 T threonine           4.6          8           2
 V valine              8.0         14           2
 W tryptophan          4.6          8           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346598 
LOC100292898          1.000   PREDICTED: hypothetical protein 
LOC100289132          1.000   PREDICTED: hypothetical protein XP_002342440 
VAX1                  0.029   ventral anterior homeobox 1 isoform a 
LOC100289969          0.023   PREDICTED: hypothetical protein XP_002347692 
LOC100286949          0.023   PREDICTED: hypothetical protein XP_002342730 
POM121L2              0.017   POM121 membrane glycoprotein-like 2 
KBTBD11               0.014   kelch repeat and BTB (POZ) domain containing 11 [Homo...
IRS4                  0.014   insulin receptor substrate 4 
LOC100131960          0.014   PREDICTED: hypothetical protein 
TCEAL5                0.014   transcription elongation factor A (SII)-like 5 [Homo...
ZBTB32                0.014   zinc finger and BTB domain containing 32 
LOC100290783          0.012   PREDICTED: hypothetical protein XP_002347614 
LOC100288864          0.012   PREDICTED: hypothetical protein XP_002343435 
TNK2                  0.012   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.012   tyrosine kinase, non-receptor, 2 isoform 2 
KIF26A                0.012   kinesin family member 26A 
SCEL                  0.012   sciellin isoform 1 
SCEL                  0.012   sciellin isoform 2 
LOC401399             0.012   hypothetical protein LOC401399 
TCEAL3                0.012   transcription elongation factor A (SII)-like 3 [Homo...
TCEAL3                0.012   transcription elongation factor A (SII)-like 3 [Homo...
MGC50722              0.012   hypothetical protein LOC399693 
HECA                  0.009   headcase 
MEGF6                 0.009   EGF-like-domain, multiple 3 
EML3                  0.009   echinoderm microtubule associated protein like 3 [H...
LOC100291554          0.009   PREDICTED: hypothetical protein XP_002345934 
LOC100290255          0.009   PREDICTED: hypothetical protein XP_002346835 
LOC100287733          0.009   PREDICTED: hypothetical protein XP_002342667 
ODF3B                 0.009   outer dense fiber of sperm tails 3B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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