Guide to the Human Genome
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Name: LOC100291210 Sequence: fasta or formatted (158aa) NCBI GI: 239751136
Description:

PREDICTED: hypothetical protein XP_002347722 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {115aa} PREDICTED: hypothetical protein XP_002347721 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         19           3
 C cysteine            7.6         12           2
 D aspartate           0.6          1           1
 E glutamate           2.5          4           1
 F phenylalanine       1.3          2           1
 G glycine             8.9         14           2
 H histidine           5.1          8           4
 I isoleucine          0.6          1           1
 K lysine              1.9          3           2
 L leucine             6.3         10           2
 M methionine          2.5          4           1
 N asparagine          0.6          1           1
 P proline            10.8         17           2
 Q glutamine           3.2          5           1
 R arginine           10.1         16           2
 S serine             12.0         19           5
 T threonine           5.7          9           2
 V valine              4.4          7           1
 W tryptophan          1.9          3           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347722 isofor... 
LOC100293820          1.000   PREDICTED: hypothetical protein isoform 2 
LOC100288525          1.000   PREDICTED: hypothetical protein XP_002344147 isofor...
LOC100293820          0.056   PREDICTED: hypothetical protein isoform 1 
LOC100291210          0.056   PREDICTED: hypothetical protein XP_002347721 isofor...
LOC100288525          0.056   PREDICTED: hypothetical protein XP_002344146 isofor...
LOC100286949          0.025   PREDICTED: hypothetical protein XP_002342730 
LRCH1                 0.022   leucine-rich repeats and calponin homology (CH) doma...
MAF                   0.022   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.022   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
UBE4B                 0.022   ubiquitination factor E4B isoform 2 
UBE4B                 0.022   ubiquitination factor E4B isoform 1 
ERC1                  0.019   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.019   RAB6-interacting protein 2 isoform delta 
ZSWIM5                0.019   zinc finger, SWIM domain containing 5 
SLC34A3               0.016   solute carrier family 34 (sodium phosphate), member ...
VWCE                  0.016   von Willebrand factor C and EGF domains 
LOC375295             0.016   PREDICTED: hypothetical protein LOC375295 
LOC375295             0.016   PREDICTED: hypothetical protein LOC375295 
LOC375295             0.016   PREDICTED: hypothetical protein 
TBX1                  0.016   T-box 1 isoform B 
TBX1                  0.016   T-box 1 isoform C 
TBX1                  0.016   T-box 1 isoform A 
PRRT1                 0.016   NG5 protein 
LOC100293313          0.013   PREDICTED: hypothetical protein 
LOC100290927          0.013   PREDICTED: hypothetical protein XP_002346500 
LOC100289192          0.013   PREDICTED: hypothetical protein XP_002342357 
HCFC1                 0.013   host cell factor 1 
LOC100292058          0.013   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.013   PREDICTED: hypothetical protein XP_002347417 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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