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Search of human proteins with 239742452
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742452 PREDICTED: hypothetical protein [Homo sapiens]
(131 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753948 PREDICTED: hypothetical protein [Homo sapiens] 256 5e-69
gi|239748488 PREDICTED: hypothetical protein [Homo sapiens] 256 5e-69
gi|239742452 PREDICTED: hypothetical protein [Homo sapiens] 256 5e-69
gi|239753405 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo ... 35 0.017
gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo ... 35 0.017
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.064
gi|16933557 dachsous 1 precursor [Homo sapiens] 33 0.083
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 32 0.11
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 32 0.14
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 32 0.14
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 32 0.14
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|22547221 tolloid-like 1 [Homo sapiens] 32 0.14
gi|169208967 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|169169912 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|169208709 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|239749005 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|169208196 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|239743025 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|19923597 Sin3A-associated protein, 130kDa isoform b [Homo sap... 32 0.19
gi|225579127 Sin3A-associated protein, 130kDa isoform a [Homo sa... 32 0.19
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 31 0.32
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 31 0.32
gi|239757749 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo ... 30 0.41
gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens] 30 0.41
gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo ... 30 0.41
gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens] 30 0.41
gi|239746769 PREDICTED: similar to Serine/threonine-protein kina... 30 0.41
>gi|239753948 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 256 bits (653), Expect = 5e-69
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MIRETCSRTGTLLSLKAVVMKQPKVSAAITLSEKANSEFARDSTVFIAIVSHESGLHTHT 60
MIRETCSRTGTLLSLKAVVMKQPKVSAAITLSEKANSEFARDSTVFIAIVSHESGLHTHT
Sbjct: 1 MIRETCSRTGTLLSLKAVVMKQPKVSAAITLSEKANSEFARDSTVFIAIVSHESGLHTHT 60
Query: 61 QAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASARAPASRNTPTARTGRRGKGE 120
QAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASARAPASRNTPTARTGRRGKGE
Sbjct: 61 QAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASARAPASRNTPTARTGRRGKGE 120
Query: 121 TQPRARPSVAA 131
TQPRARPSVAA
Sbjct: 121 TQPRARPSVAA 131
>gi|239748488 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 256 bits (653), Expect = 5e-69
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MIRETCSRTGTLLSLKAVVMKQPKVSAAITLSEKANSEFARDSTVFIAIVSHESGLHTHT 60
MIRETCSRTGTLLSLKAVVMKQPKVSAAITLSEKANSEFARDSTVFIAIVSHESGLHTHT
Sbjct: 1 MIRETCSRTGTLLSLKAVVMKQPKVSAAITLSEKANSEFARDSTVFIAIVSHESGLHTHT 60
Query: 61 QAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASARAPASRNTPTARTGRRGKGE 120
QAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASARAPASRNTPTARTGRRGKGE
Sbjct: 61 QAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASARAPASRNTPTARTGRRGKGE 120
Query: 121 TQPRARPSVAA 131
TQPRARPSVAA
Sbjct: 121 TQPRARPSVAA 131
>gi|239742452 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 256 bits (653), Expect = 5e-69
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MIRETCSRTGTLLSLKAVVMKQPKVSAAITLSEKANSEFARDSTVFIAIVSHESGLHTHT 60
MIRETCSRTGTLLSLKAVVMKQPKVSAAITLSEKANSEFARDSTVFIAIVSHESGLHTHT
Sbjct: 1 MIRETCSRTGTLLSLKAVVMKQPKVSAAITLSEKANSEFARDSTVFIAIVSHESGLHTHT 60
Query: 61 QAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASARAPASRNTPTARTGRRGKGE 120
QAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASARAPASRNTPTARTGRRGKGE
Sbjct: 61 QAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASARAPASRNTPTARTGRRGKGE 120
Query: 121 TQPRARPSVAA 131
TQPRARPSVAA
Sbjct: 121 TQPRARPSVAA 131
>gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 35.4 bits (80), Expect = 0.013
Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 51 SHESGLHTH-TQAPVPAADRLPAIRAVCGARVP--GARAAAAPPPFRSSDASARAPASRN 107
SH HT +Q+ P P R GA P A A PP R +A A ASR
Sbjct: 101 SHRQQQHTVLSQSLSPMESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRA 160
Query: 108 TPTARTGRRGKGETQPRARPSVAA 131
P A RG+G ARP + A
Sbjct: 161 GPRASRRGRGRGRGLQAARPPLLA 184
>gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo
sapiens]
Length = 219
Score = 35.0 bits (79), Expect = 0.017
Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 51 SHESGLHTH-TQAPVPAADRLPAIRAVCGARVP--GARAAAAPPPFRSSDASARAPASRN 107
SH HT +Q+ P P R GA P A A PP R +A A ASR
Sbjct: 101 SHPQQQHTVLSQSLSPMESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRA 160
Query: 108 TPTARTGRRGKGETQPRARPSVAA 131
P A RG+G ARP + A
Sbjct: 161 GPRASRRGRGRGRGLQAARPPLLA 184
>gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo
sapiens]
Length = 219
Score = 35.0 bits (79), Expect = 0.017
Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 51 SHESGLHTH-TQAPVPAADRLPAIRAVCGARVP--GARAAAAPPPFRSSDASARAPASRN 107
SH HT +Q+ P P R GA P A A PP R +A A ASR
Sbjct: 101 SHPQQQHTVLSQSLSPMESEGPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRA 160
Query: 108 TPTARTGRRGKGETQPRARPSVAA 131
P A RG+G ARP + A
Sbjct: 161 GPRASRRGRGRGRGLQAARPPLLA 184
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.1 bits (74), Expect = 0.064
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 69 RLPAIRAVCGARVPG--ARAAAAPPPFRSSDASARAPASRNTPTARTGRRGKGETQPRAR 126
R PA R +R P R+ + P RS + +R PA R +RT RRG+ ++ R
Sbjct: 650 RTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVR 709
Score = 27.7 bits (60), Expect = 2.7
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 69 RLPAIRAVCGARVPGARAAAAPPPFR-----------SSDASARAPASRNTPTART-GRR 116
R PA R +R P R + P R S + +R PA R +RT RR
Sbjct: 607 RTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARR 666
Query: 117 GKGETQPRARPS 128
G+ ++ AR S
Sbjct: 667 GRSRSRTPARRS 678
Score = 26.2 bits (56), Expect = 7.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 65 PAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASARAPASRNTPTA 111
P PA+ + GAR P A AA + + +A P+S TP A
Sbjct: 2287 PRTPTAPAVN-LAGARTPAALAALSLTGSGTPPTAANYPSSSRTPQA 2332
>gi|16933557 dachsous 1 precursor [Homo sapiens]
Length = 3298
Score = 32.7 bits (73), Expect = 0.083
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 63 PVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASARA---PASRNTPTARTGRRGKG 119
P P D P I AV PGA++ PP ++ A+ARA PAS +P + G
Sbjct: 3195 PAPRIDPPPLITAVAH---PGAKSV---PPKPANTAAARAIFPPASHRSPISHEGSLSSA 3248
Query: 120 ETQPRARPSVA 130
P PS++
Sbjct: 3249 AMSPSFSPSLS 3259
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 32.3 bits (72), Expect = 0.11
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 52 HESGLHTHTQAPVPAADRLPAIRAVCG-ARVPGARAAAAPPPFR---------SSDASAR 101
H H H P P DR R G AR R + +P R SS + +
Sbjct: 2210 HHHHHHHHHHPPPPDKDRYAQERPDHGRARARDQRWSRSPSEGREHMAHRQGSSSVSGSP 2269
Query: 102 APASRNTPTARTGRRGKGETQPRARPSVA 130
AP++ T T R GRR +T RP V+
Sbjct: 2270 APSTSGTSTPRRGRRQLPQTPSTPRPHVS 2298
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 32.0 bits (71), Expect = 0.14
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 16/80 (20%)
Query: 52 HESGLHTHTQAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASAR-APASRNTPT 110
H+SG AP P PG +A A P + A+AR AP +
Sbjct: 113 HQSGSRLRPAAPGPR---------------PGCSSARASPAPAAPQAAARTAPGRAASGG 157
Query: 111 ARTGRRGKGETQPRARPSVA 130
+ G RG+G Q ARPS A
Sbjct: 158 SGPGSRGQGSDQVGARPSRA 177
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 32.0 bits (71), Expect = 0.14
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 16/80 (20%)
Query: 52 HESGLHTHTQAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASAR-APASRNTPT 110
H+SG AP P PG +A A P + A+AR AP +
Sbjct: 113 HQSGSRLRPAAPGPR---------------PGCSSARASPAPAAPQAAARTAPGRAASGG 157
Query: 111 ARTGRRGKGETQPRARPSVA 130
+ G RG+G Q ARPS A
Sbjct: 158 SGPGSRGQGSDQVGARPSRA 177
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 32.0 bits (71), Expect = 0.14
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 16/80 (20%)
Query: 52 HESGLHTHTQAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASAR-APASRNTPT 110
H+SG AP P PG +A A P + A+AR AP +
Sbjct: 113 HQSGSRLRPAAPGPR---------------PGCSSARASPAPAAPQAAARTAPGRAASGG 157
Query: 111 ARTGRRGKGETQPRARPSVA 130
+ G RG+G Q ARPS A
Sbjct: 158 SGPGSRGQGSDQVGARPSRA 177
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 32.0 bits (71), Expect = 0.14
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 16/80 (20%)
Query: 52 HESGLHTHTQAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASAR-APASRNTPT 110
H+SG AP P PG +A A P + A+AR AP +
Sbjct: 113 HQSGSRLRPAAPGPR---------------PGCSSARASPAPAAPQAAARTAPGRAASGG 157
Query: 111 ARTGRRGKGETQPRARPSVA 130
+ G RG+G Q ARPS A
Sbjct: 158 SGPGSRGQGSDQVGARPSRA 177
>gi|22547221 tolloid-like 1 [Homo sapiens]
Length = 1013
Score = 32.0 bits (71), Expect = 0.14
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 49 IVSHESGLHTHTQAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRS--SDASARAPASR 106
I H+ + H + ++ P + +CG ++P A F SDAS + +
Sbjct: 821 IEQHQECAYDHLEVFDGETEKSPILGRLCGNKIPDPLVATGNKMFVRFVSDASVQRKGFQ 880
Query: 107 NTPTARTGRRGKGETQPR 124
T + G R K E++PR
Sbjct: 881 ATHSTECGGRLKAESKPR 898
>gi|169208967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 31.6 bits (70), Expect = 0.19
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 55 GLHTHTQAPVPAADRLPAIRAVCGARVPG-----ARAAAAPPPFRSSDASARAPASRNTP 109
GL +Q P+ R P A+ PG + AAA P RS S P S
Sbjct: 123 GLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRG 182
Query: 110 TARTGRRGKG 119
+ R RRG+G
Sbjct: 183 SRRWRRRGRG 192
>gi|169169912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 31.6 bits (70), Expect = 0.19
Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 57 HTHTQAPVPAADRLPAIRAVCGARVPG-ARAAAAP-----------PPFRSSDASARAPA 104
HTH P P A RA+ A+ PG A AA AP PP + A AP
Sbjct: 94 HTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPH 153
Query: 105 SRNTPTARTGRRGKG 119
R T G R G
Sbjct: 154 QRAAATGSGGSRSVG 168
>gi|169208709 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 31.6 bits (70), Expect = 0.19
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 55 GLHTHTQAPVPAADRLPAIRAVCGARVPG-----ARAAAAPPPFRSSDASARAPASRNTP 109
GL +Q P+ R P A+ PG + AAA P RS S P S
Sbjct: 73 GLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRG 132
Query: 110 TARTGRRGKG 119
+ R RRG+G
Sbjct: 133 SRRWRRRGRG 142
>gi|239749005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 31.6 bits (70), Expect = 0.19
Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 57 HTHTQAPVPAADRLPAIRAVCGARVPG-ARAAAAP-----------PPFRSSDASARAPA 104
HTH P P A RA+ A+ PG A AA AP PP + A AP
Sbjct: 88 HTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPH 147
Query: 105 SRNTPTARTGRRGKG 119
R T G R G
Sbjct: 148 QRAAATGSGGSRSVG 162
>gi|169208196 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 31.6 bits (70), Expect = 0.19
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 55 GLHTHTQAPVPAADRLPAIRAVCGARVPG-----ARAAAAPPPFRSSDASARAPASRNTP 109
GL +Q P+ R P A+ PG + AAA P RS S P S
Sbjct: 73 GLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRG 132
Query: 110 TARTGRRGKG 119
+ R RRG+G
Sbjct: 133 SRRWRRRGRG 142
>gi|239743025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 31.6 bits (70), Expect = 0.19
Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 57 HTHTQAPVPAADRLPAIRAVCGARVPG-ARAAAAP-----------PPFRSSDASARAPA 104
HTH P P A RA+ A+ PG A AA AP PP + A AP
Sbjct: 88 HTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPH 147
Query: 105 SRNTPTARTGRRGKG 119
R T G R G
Sbjct: 148 QRAAATGSGGSRSVG 162
>gi|19923597 Sin3A-associated protein, 130kDa isoform b [Homo
sapiens]
Length = 1048
Score = 31.6 bits (70), Expect = 0.19
Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 30/147 (20%)
Query: 9 TGTLLSLKAVVMKQPKVSAAITLSEKANSEFARDSTVFIAIVSH------ESGLHTHTQ- 61
T + LS + ++ P SAAI++ A S RD T I + SH + LHT Q
Sbjct: 311 TDSALSRPTLSIQHPP-SAAISIQRPAQS---RDVTTRITLPSHPALGTPKQQLHTMAQK 366
Query: 62 --------------APVPAADRLPAIR---AVCGARVPGARAAAAPPPFRSSDASARAPA 104
AP+ A + +P+ +V + P + P SS A+A
Sbjct: 367 TIFSTGTPVAAATVAPILATNTIPSATTAGSVSHTQAPTSTIVTMTVPSHSSHATA--VT 424
Query: 105 SRNTPTARTGRRGKGETQPRARPSVAA 131
+ N P A+ + T PR +P A
Sbjct: 425 TSNIPVAKVVPQQITHTSPRIQPDYPA 451
>gi|225579127 Sin3A-associated protein, 130kDa isoform a [Homo
sapiens]
Length = 1083
Score = 31.6 bits (70), Expect = 0.19
Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 30/147 (20%)
Query: 9 TGTLLSLKAVVMKQPKVSAAITLSEKANSEFARDSTVFIAIVSH------ESGLHTHTQ- 61
T + LS + ++ P SAAI++ A S RD T I + SH + LHT Q
Sbjct: 311 TDSALSRPTLSIQHPP-SAAISIQRPAQS---RDVTTRITLPSHPALGTPKQQLHTMAQK 366
Query: 62 --------------APVPAADRLPAIR---AVCGARVPGARAAAAPPPFRSSDASARAPA 104
AP+ A + +P+ +V + P + P SS A+A
Sbjct: 367 TIFSTGTPVAAATVAPILATNTIPSATTAGSVSHTQAPTSTIVTMTVPSHSSHATA--VT 424
Query: 105 SRNTPTARTGRRGKGETQPRARPSVAA 131
+ N P A+ + T PR +P A
Sbjct: 425 TSNIPVAKVVPQQITHTSPRIQPDYPA 451
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 30.8 bits (68), Expect = 0.32
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 60 TQAPVPAADRLPA-IRAVCGARVPGARAAAAPPPFRSSDASARAPASRNTPTARTGRRGK 118
T+ P P LP A+ P ARA AAP P + R+PA R + +
Sbjct: 721 TRDPTPRPPGLPEEATALAAPSPPRARARAAPRPL-GAHGRRRSPAKRAEAASMLAADVR 779
Query: 119 GETQPRARPSVA 130
G+T+ R VA
Sbjct: 780 GKTRSLGRAEVA 791
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 30.8 bits (68), Expect = 0.32
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 60 TQAPVPAADRLPA-IRAVCGARVPGARAAAAPPPFRSSDASARAPASRNTPTARTGRRGK 118
T+ P P LP A+ P ARA AAP P + R+PA R + +
Sbjct: 716 TRDPTPRPPGLPEEATALAAPSPPRARARAAPRPL-GAHGRRRSPAKRAEAASMLAADVR 774
Query: 119 GETQPRARPSVA 130
G+T+ R VA
Sbjct: 775 GKTRSLGRAEVA 786
>gi|239757749 PREDICTED: hypothetical protein [Homo sapiens]
Length = 264
Score = 30.4 bits (67), Expect = 0.41
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 21/143 (14%)
Query: 3 RETCSRTGTLLSLKAVVMKQPKVSAAITLSEKA--NSEFARDSTVFIAIVSHESGLHTHT 60
RET + G L+L+A P AA S A V VS L
Sbjct: 59 RETGNAQGPRLALQARAAA-PAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPL 117
Query: 61 QAPVPAADRLPAIRAVCGARVP-------------GARAAAAPPPFRSSDASARAPASRN 107
+ P PAA A CG R GA AA PP ++ A AR P R+
Sbjct: 118 RQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLP-ERS 176
Query: 108 TPTARTGRRGKGETQPRARPSVA 130
P R G E P P +A
Sbjct: 177 GPARRPG----PECVPMKAPGLA 195
>gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo
sapiens]
Length = 238
Score = 30.4 bits (67), Expect = 0.41
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 57 HTHTQAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASARAPASRNTPTARTGRR 116
H P P A RL A R RA A P + A +P +PT GRR
Sbjct: 100 HGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADG-SPHVSTSPTPAPGRR 158
Query: 117 GKGETQPRARPS 128
G E + R P+
Sbjct: 159 GGREARLRPMPT 170
>gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens]
Length = 317
Score = 30.4 bits (67), Expect = 0.41
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 21/143 (14%)
Query: 3 RETCSRTGTLLSLKAVVMKQPKVSAAITLSEKA--NSEFARDSTVFIAIVSHESGLHTHT 60
RET + G L+L+A P AA S A V VS L
Sbjct: 53 RETGNAQGPRLALQARAAA-PAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPL 111
Query: 61 QAPVPAADRLPAIRAVCGARVP-------------GARAAAAPPPFRSSDASARAPASRN 107
+ P PAA A CG R GA AA PP ++ A AR P R+
Sbjct: 112 RQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLP-ERS 170
Query: 108 TPTARTGRRGKGETQPRARPSVA 130
P R G E P P +A
Sbjct: 171 GPARRPG----PECVPMKAPGLA 189
>gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo
sapiens]
Length = 238
Score = 30.4 bits (67), Expect = 0.41
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 57 HTHTQAPVPAADRLPAIRAVCGARVPGARAAAAPPPFRSSDASARAPASRNTPTARTGRR 116
H P P A RL A R RA A P + A +P +PT GRR
Sbjct: 100 HGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADG-SPHVSTSPTPAPGRR 158
Query: 117 GKGETQPRARPS 128
G E + R P+
Sbjct: 159 GGREARLRPMPT 170
>gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens]
Length = 317
Score = 30.4 bits (67), Expect = 0.41
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 21/143 (14%)
Query: 3 RETCSRTGTLLSLKAVVMKQPKVSAAITLSEKA--NSEFARDSTVFIAIVSHESGLHTHT 60
RET + G L+L+A P AA S A V VS L
Sbjct: 53 RETGNAQGPRLALQARAAA-PAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPL 111
Query: 61 QAPVPAADRLPAIRAVCGARVP-------------GARAAAAPPPFRSSDASARAPASRN 107
+ P PAA A CG R GA AA PP ++ A AR P R+
Sbjct: 112 RQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLP-ERS 170
Query: 108 TPTARTGRRGKGETQPRARPSVA 130
P R G E P P +A
Sbjct: 171 GPARRPG----PECVPMKAPGLA 189
>gi|239746769 PREDICTED: similar to Serine/threonine-protein kinase
PRKX (Protein kinase PKX1) [Homo sapiens]
Length = 330
Score = 30.4 bits (67), Expect = 0.41
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 21/143 (14%)
Query: 3 RETCSRTGTLLSLKAVVMKQPKVSAAITLSEKA--NSEFARDSTVFIAIVSHESGLHTHT 60
RET + G L+L+A P AA S A V VS L
Sbjct: 66 RETGNAQGPRLALQARAAA-PAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPL 124
Query: 61 QAPVPAADRLPAIRAVCGARVP-------------GARAAAAPPPFRSSDASARAPASRN 107
+ P PAA A CG R GA AA PP ++ A AR P R+
Sbjct: 125 RQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLP-ERS 183
Query: 108 TPTARTGRRGKGETQPRARPSVA 130
P R G E P P +A
Sbjct: 184 GPARRPG----PECVPMKAPGLA 202
Score = 26.9 bits (58), Expect = 4.6
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 67 ADRLPAIRAVCGARVPGARAAAAPPPFRSSDASARAPASRNTPTARTGRRGKGETQPRAR 126
+D L I+A + V GARA A PP R R P R G RG+ ET
Sbjct: 16 SDNLGTIKAK-HSLVGGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGR-ETGNAQG 73
Query: 127 PSVA 130
P +A
Sbjct: 74 PRLA 77
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.124 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,240,708
Number of Sequences: 37866
Number of extensions: 244954
Number of successful extensions: 2244
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 147
Number of HSP's that attempted gapping in prelim test: 2052
Number of HSP's gapped (non-prelim): 346
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.