Guide to the Human Genome
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Name: LOC100132013 Sequence: fasta or formatted (131aa) NCBI GI: 239753948
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {131aa} PREDICTED: hypothetical protein
alt mRNA {131aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            19.1         25           4
 C cysteine            1.5          2           1
 D aspartate           2.3          3           1
 E glutamate           3.8          5           1
 F phenylalanine       2.3          3           1
 G glycine             5.3          7           1
 H histidine           2.3          3           1
 I isoleucine          3.8          5           1
 K lysine              3.8          5           1
 L leucine             4.6          6           2
 M methionine          1.5          2           1
 N asparagine          1.5          2           1
 P proline             9.2         12           3
 Q glutamine           2.3          3           1
 R arginine           11.5         15           2
 S serine              9.9         13           2
 T threonine           8.4         11           1
 V valine              6.9          9           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132013          1.000   PREDICTED: hypothetical protein 
LOC100132013          1.000   PREDICTED: hypothetical protein 
LOC100293212          0.043   PREDICTED: hypothetical protein 
LOC100289796          0.043   PREDICTED: hypothetical protein XP_002346485 
LOC100288812          0.043   PREDICTED: hypothetical protein XP_002342329 
SRRM2                 0.035   splicing coactivator subunit SRm300 
DCHS1                 0.035   dachsous 1 precursor 
CACNA1A               0.030   calcium channel, alpha 1A subunit isoform 4 
LOC100291634          0.030   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.030   PREDICTED: hypothetical protein XP_002346952 
LOC100287232          0.030   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.030   PREDICTED: hypothetical protein 
TLL1                  0.030   tolloid-like 1 
LOC100130363          0.030   PREDICTED: hypothetical protein 
LOC100130465          0.030   PREDICTED: hypothetical protein 
LOC100130363          0.030   PREDICTED: hypothetical protein 
LOC100130465          0.030   PREDICTED: hypothetical protein 
LOC100130363          0.030   PREDICTED: hypothetical protein 
LOC100130465          0.030   PREDICTED: hypothetical protein 
SAP130                0.030   Sin3A-associated protein, 130kDa isoform b 
SAP130                0.030   Sin3A-associated protein, 130kDa isoform a 
SCARF2                0.026   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.026   scavenger receptor class F, member 2 isoform 2 [Homo...
LOC100293492          0.022   PREDICTED: hypothetical protein 
LOC100291781          0.022   PREDICTED: hypothetical protein XP_002344871 
LOC729162             0.022   PREDICTED: similar to hCG1981372 
LOC100290673          0.022   PREDICTED: hypothetical protein XP_002347567 
LOC729162             0.022   PREDICTED: similar to hCG1981372 
LOC389906             0.022   PREDICTED: similar to Serine/threonine-protein kina...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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