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Search of human proteins with 116256477
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116256477 Down syndrome critical region gene 1-like 1
protein [Homo sapiens]
(197 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116256477 Down syndrome critical region gene 1-like 1 protein... 405 e-113
gi|7305009 Down syndrome critical region gene 1-like 2 [Homo sap... 258 3e-69
gi|44680110 calcipressin 1 isoform c [Homo sapiens] 247 4e-66
gi|33620725 calcipressin 1 isoform a [Homo sapiens] 240 6e-64
gi|44680108 calcipressin 1 isoform b [Homo sapiens] 157 7e-39
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 37 0.011
gi|5174751 Yes-associated protein 1, 65kDa isoform 2 [Homo sapiens] 34 0.070
gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo sap... 34 0.070
gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapi... 33 0.12
gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo ... 31 0.78
gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo s... 31 0.78
gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ... 31 0.78
gi|156086740 GTPase activating Rap/RanGAP domain-like 4 isoform ... 31 0.78
gi|156086724 GTPase activating Rap/RanGAP domain-like 4 isoform ... 31 0.78
gi|21717832 sperm equatorial segment protein 1 [Homo sapiens] 30 1.0
gi|123317847 germ cell associated 1 isoform 1 [Homo sapiens] 30 1.7
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 29 2.3
gi|33667044 ABI gene family, member 3 (NESH) binding protein [Ho... 29 3.0
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 29 3.0
gi|39812378 RAN binding protein 9 [Homo sapiens] 28 3.9
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 28 3.9
gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Hom... 28 3.9
gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Hom... 28 3.9
gi|37537554 hypothetical protein FLJ37538 [Homo sapiens] 28 3.9
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 28 5.0
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens] 28 5.0
gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens] 28 5.0
gi|60460889 Myb protein P42POP [Homo sapiens] 28 5.0
gi|19882241 immunoglobulin superfamily, DCC subclass, member 4 [... 28 5.0
gi|148539628 discs, large homolog 1 isoform 1 [Homo sapiens] 28 6.6
>gi|116256477 Down syndrome critical region gene 1-like 1 protein
[Homo sapiens]
Length = 197
Score = 405 bits (1041), Expect = e-113
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MPAPSMDCDVSTLVACVVDVEVFTNQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSN 60
MPAPSMDCDVSTLVACVVDVEVFTNQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSN
Sbjct: 1 MPAPSMDCDVSTLVACVVDVEVFTNQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSN 60
Query: 61 PKSAARARIELHETQFRGKKLKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVG 120
PKSAARARIELHETQFRGKKLKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVG
Sbjct: 61 PKSAARARIELHETQFRGKKLKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVG 120
Query: 121 WQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPK 180
WQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPK
Sbjct: 121 WQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPK 180
Query: 181 PKIIQTRRPGLPPSVSN 197
PKIIQTRRPGLPPSVSN
Sbjct: 181 PKIIQTRRPGLPPSVSN 197
>gi|7305009 Down syndrome critical region gene 1-like 2 [Homo
sapiens]
Length = 241
Score = 258 bits (658), Expect = 3e-69
Identities = 131/187 (70%), Positives = 148/187 (79%), Gaps = 1/187 (0%)
Query: 11 STLVACVVDVEVFTNQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIE 70
++L AC V VF +E KE+FE LF YDD VTFQLFKSFRRVRINFS P++AARARIE
Sbjct: 47 TSLFACSVHEAVFEAREQKERFEALFTIYDDQVTFQLFKSFRRVRINFSKPEAAARARIE 106
Query: 71 LHETQFRGKKLKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPV 130
LHET F G+KLKLYFAQVQ DK +L PPQP KQFLISPP+SPPVGW+ DA PV
Sbjct: 107 LHETDFNGQKLKLYFAQVQMSGEVRDKSYLLPPQPVKQFLISPPASPPVGWKQSEDAMPV 166
Query: 131 LNYDLLYAVAKLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRPG 190
+NYDLL AV+KLGPGEKYELHAGTESTPSVVVHVC+S+ EEEE+ K +PK KI QTRRP
Sbjct: 167 INYDLLCAVSKLGPGEKYELHAGTESTPSVVVHVCESETEEEEETK-NPKQKIAQTRRPD 225
Query: 191 LPPSVSN 197
P + N
Sbjct: 226 PPTAALN 232
>gi|44680110 calcipressin 1 isoform c [Homo sapiens]
Length = 197
Score = 247 bits (631), Expect = 4e-66
Identities = 120/187 (64%), Positives = 148/187 (79%), Gaps = 8/187 (4%)
Query: 11 STLVACVVDVEVFTNQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIE 70
S+L+ACV + ++F+ E + KFE LFRTYD +TFQ FKSF+RVRINFSNP SAA AR++
Sbjct: 11 SSLIACVANSDIFSESETRAKFESLFRTYDKDITFQYFKSFKRVRINFSNPFSAADARLQ 70
Query: 71 LHETQFRGKKLKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPV 130
LH+T+F GK++KLYFAQ + HLAPP P KQFLISPP+SPPVGW+ + DATPV
Sbjct: 71 LHKTEFLGKEMKLYFAQTLHIGSS----HLAPPNPDKQFLISPPASPPVGWKQVEDATPV 126
Query: 131 LNYDLLYAVAKLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTS----PKPKIIQT 186
+NYDLLYA++KLGPGEKYELHA T++TPSVVVHVC+SD E+EE+ + PKPKIIQT
Sbjct: 127 INYDLLYAISKLGPGEKYELHAATDTTPSVVVHVCESDQEKEEEEEMERMRRPKPKIIQT 186
Query: 187 RRPGLPP 193
RRP P
Sbjct: 187 RRPEYTP 193
>gi|33620725 calcipressin 1 isoform a [Homo sapiens]
Length = 252
Score = 240 bits (612), Expect = 6e-64
Identities = 119/187 (63%), Positives = 144/187 (77%), Gaps = 8/187 (4%)
Query: 11 STLVACVVDVEVFTNQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIE 70
S +AC +D VF + + KFE LFRTYD +TFQ FKSF+RVRINFSNP SAA AR++
Sbjct: 66 SATIACHLDPRVFVDGLCRAKFESLFRTYDKDITFQYFKSFKRVRINFSNPFSAADARLQ 125
Query: 71 LHETQFRGKKLKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPV 130
LH+T+F GK++KLYFAQ + HLAPP P KQFLISPP+SPPVGW+ + DATPV
Sbjct: 126 LHKTEFLGKEMKLYFAQTLHIGSS----HLAPPNPDKQFLISPPASPPVGWKQVEDATPV 181
Query: 131 LNYDLLYAVAKLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTS----PKPKIIQT 186
+NYDLLYA++KLGPGEKYELHA T++TPSVVVHVC+SD E+EE+ + PKPKIIQT
Sbjct: 182 INYDLLYAISKLGPGEKYELHAATDTTPSVVVHVCESDQEKEEEEEMERMRRPKPKIIQT 241
Query: 187 RRPGLPP 193
RRP P
Sbjct: 242 RRPEYTP 248
>gi|44680108 calcipressin 1 isoform b [Homo sapiens]
Length = 117
Score = 157 bits (396), Expect = 7e-39
Identities = 77/117 (65%), Positives = 91/117 (77%), Gaps = 8/117 (6%)
Query: 81 LKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVA 140
+KLYFAQ + HLAPP P KQFLISPP+SPPVGW+ + DATPV+NYDLLYA++
Sbjct: 1 MKLYFAQTLHIGSS----HLAPPNPDKQFLISPPASPPVGWKQVEDATPVINYDLLYAIS 56
Query: 141 KLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTS----PKPKIIQTRRPGLPP 193
KLGPGEKYELHA T++TPSVVVHVC+SD E+EE+ + PKPKIIQTRRP P
Sbjct: 57 KLGPGEKYELHAATDTTPSVVVHVCESDQEKEEEEEMERMRRPKPKIIQTRRPEYTP 113
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 37.0 bits (84), Expect = 0.011
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 101 APPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSV 160
APP P + PP SPP QP + P LL V + PG + E A T T +
Sbjct: 976 APPPPTLPPALPPPESPP-KVQPEPEPEP----GLLLEVEE--PGTEEERGADTAPTLAP 1028
Query: 161 VVHVCDSDIEEE-EDPKTSPKPKIIQTRRPGLPPSV 195
++E E E P P P+ + P PP++
Sbjct: 1029 EALPSQGEVEREGESPAAGPPPQELVEEEPSAPPTL 1064
>gi|5174751 Yes-associated protein 1, 65kDa isoform 2 [Homo sapiens]
Length = 454
Score = 34.3 bits (77), Expect = 0.070
Identities = 33/106 (31%), Positives = 44/106 (41%), Gaps = 32/106 (30%)
Query: 102 PPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSV- 160
PPQPA Q PPS PP G P + GPG+ A T++ P
Sbjct: 8 PPQPAPQGQGQPPSQPPQGQGPPS-----------------GPGQ--PAPAATQAAPQAP 48
Query: 161 -----VVHV-CDSDIEEEE------DPKTSPKPKIIQTRRPGLPPS 194
+VHV DS+ + E +PKT+ P+ + R LP S
Sbjct: 49 PAGHQIVHVRGDSETDLEALFNAVMNPKTANVPQTVPMRLRKLPDS 94
>gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo
sapiens]
Length = 504
Score = 34.3 bits (77), Expect = 0.070
Identities = 33/106 (31%), Positives = 44/106 (41%), Gaps = 32/106 (30%)
Query: 102 PPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSV- 160
PPQPA Q PPS PP G P + GPG+ A T++ P
Sbjct: 8 PPQPAPQGQGQPPSQPPQGQGPPS-----------------GPGQ--PAPAATQAAPQAP 48
Query: 161 -----VVHV-CDSDIEEEE------DPKTSPKPKIIQTRRPGLPPS 194
+VHV DS+ + E +PKT+ P+ + R LP S
Sbjct: 49 PAGHQIVHVRGDSETDLEALFNAVMNPKTANVPQTVPMRLRKLPDS 94
>gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapiens]
Length = 1790
Score = 33.5 bits (75), Expect = 0.12
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 101 APPQPAKQFLISPPSSPPVG---WQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTEST 157
A P PA PP PP G ++ + D++ Y + + G + AG E
Sbjct: 1437 AVPAPAPVAAPPPPPPPPPGAHLYEELGDSSMHK-----YEMPQYGSRRRLLPPAGQEEY 1491
Query: 158 PSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRP 189
VV + EEEE+PK KPK ++ R P
Sbjct: 1492 GEVVGEAEEEYEEEEEEPKKIKKPK-VEIREP 1522
>gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo
sapiens]
Length = 1723
Score = 30.8 bits (68), Expect = 0.78
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 43 VTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKKLKLYFAQVQTPETDGDKLHLAP 102
+TF L + I +S + AA+A+ LH + FA E P
Sbjct: 1565 LTFHLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFAT--DDEVSRFLAQAQP 1622
Query: 103 PQPAKQFLISPPSSPPVGWQPI----NDATPV 130
P PA + PS+P GWQ + N + PV
Sbjct: 1623 PTPA-----ATPSAPAAGWQSLETGQNQSDPV 1649
>gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo
sapiens]
Length = 1029
Score = 30.8 bits (68), Expect = 0.78
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 43 VTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKKLKLYFAQVQTPETDGDKLHLAP 102
+TF L + I +S + AA+A+ LH + FA E P
Sbjct: 871 LTFHLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFAT--DDEVSRFLAQAQP 928
Query: 103 PQPAKQFLISPPSSPPVGWQPI----NDATPV 130
P PA + PS+P GWQ + N + PV
Sbjct: 929 PTPA-----ATPSAPAAGWQSLETGQNQSDPV 955
>gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo
sapiens]
Length = 1833
Score = 30.8 bits (68), Expect = 0.78
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 43 VTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKKLKLYFAQVQTPETDGDKLHLAP 102
+TF L + I +S + AA+A+ LH + FA E P
Sbjct: 1675 LTFHLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFAT--DDEVSRFLAQAQP 1732
Query: 103 PQPAKQFLISPPSSPPVGWQPI----NDATPV 130
P PA + PS+P GWQ + N + PV
Sbjct: 1733 PTPA-----ATPSAPAAGWQSLETGQNQSDPV 1759
>gi|156086740 GTPase activating Rap/RanGAP domain-like 4 isoform 2
[Homo sapiens]
Length = 715
Score = 30.8 bits (68), Expect = 0.78
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 18 VDVEVFTNQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFR 77
++ E+F N E F+ D +T Q FK FR + + +E T FR
Sbjct: 258 LEEELFGNNEESPAFKEFLDLLGDTITLQDFKGFRG-----GLDVTHGQTGVESVYTTFR 312
Query: 78 GKKLKLYFAQVQTPETDGDKLHL 100
+++ ++ + P TDGD L
Sbjct: 313 DREI-MFHVSTKLPFTDGDAQQL 334
>gi|156086724 GTPase activating Rap/RanGAP domain-like 4 isoform 1
[Homo sapiens]
Length = 730
Score = 30.8 bits (68), Expect = 0.78
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 18 VDVEVFTNQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFR 77
++ E+F N E F+ D +T Q FK FR + + +E T FR
Sbjct: 273 LEEELFGNNEESPAFKEFLDLLGDTITLQDFKGFRG-----GLDVTHGQTGVESVYTTFR 327
Query: 78 GKKLKLYFAQVQTPETDGDKLHL 100
+++ ++ + P TDGD L
Sbjct: 328 DREI-MFHVSTKLPFTDGDAQQL 349
>gi|21717832 sperm equatorial segment protein 1 [Homo sapiens]
Length = 350
Score = 30.4 bits (67), Expect = 1.0
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 154 TESTP---------SVVVHVCDSDIEEEEDPKTSPKPKIIQTRRPGLPPSVS 196
TESTP S+V+H + IE EE P+ P+P QT P + P V+
Sbjct: 116 TESTPFWSIKPNNVSIVLHAEEPYIENEE-PEPEPEPAAKQTEAPRMLPVVT 166
>gi|123317847 germ cell associated 1 isoform 1 [Homo sapiens]
Length = 285
Score = 29.6 bits (65), Expect = 1.7
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 4 PSMDCDVSTLVACV---VDVEVFTNQEVKEKFEGLFRTYDDCVTFQLFKS--FRRVRINF 58
P C+ C V ++ TN +E + + T DD +F+ F+S +
Sbjct: 46 PKPLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETV 105
Query: 59 SNPKSAARARIELHETQFRGKKLKLYFAQVQTP 91
P R+ IEL RG+K L FA +Q P
Sbjct: 106 EEPGERCRSFIELTPPAKRGEKGLLEFATLQGP 138
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 29.3 bits (64), Expect = 2.3
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 98 LHLAPPQPAKQFLISPPSSPPVGWQPINDATPV-LNYDLLYAVAKLGPGEKYELHAGTE 155
+H P P K SPP+SPP+ + P +A V D L KL P + +H G E
Sbjct: 4289 VHCLPQLPEKA---SPPASPPIAFPPAFEAAQVEAKPDELKVTVKLKPRLR-AVHGGFE 4343
>gi|33667044 ABI gene family, member 3 (NESH) binding protein [Homo
sapiens]
Length = 1075
Score = 28.9 bits (63), Expect = 3.0
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 6/137 (4%)
Query: 66 RARIELHETQFRGKKLKLYFAQVQTPETDGDKLHLA-PPQPAKQFLISPPSSPPVGWQPI 124
RA + ET F +KL+++ + P T + + P P ++ PP + P
Sbjct: 430 RATLAPSETPFVPQKLEIFTSPEMQPTTPAPQQTTSIPSTPKRRPRPKPPRTKPERTTSA 489
Query: 125 NDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSV-VVHVCDSDIEEEE---DPKTSPK 180
TP ++ PG+ + + S V H + + PKTSP+
Sbjct: 490 GTITPKISKSPEPTWTTPAPGKTQFISLKPKIPLSPEVTHTKPAPKQTPRAPPKPKTSPR 549
Query: 181 PKIIQTRR-PGLPPSVS 196
P+I QT+ P +P V+
Sbjct: 550 PRIPQTQPVPKVPQRVT 566
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 28.9 bits (63), Expect = 3.0
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 103 PQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKYEL 150
P PA++ L P +SP VG + + P + A KL P EK +L
Sbjct: 534 PSPAREKLTRPAASPAVG-EKLKKTEPAAGKETGAAKPKLTPQEKLKL 580
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 28.5 bits (62), Expect = 3.9
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 98 LHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTEST 157
L L PP P +PP PP P + A P +A GPG AG T
Sbjct: 67 LLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLA-AGPGP-----AGGAPT 120
Query: 158 PSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRPGLPPSV 195
P++V + D + + K +Q R L P+V
Sbjct: 121 PALVAGSSAAAPFPHGDSALNEQEKELQRRLKRLYPAV 158
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 28.5 bits (62), Expect = 3.9
Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 4/94 (4%)
Query: 102 PPQPAKQFLISPPSSPPV--GWQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPS 159
PP P Q SPP+SPPV P + A P L L P + P
Sbjct: 668 PPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPP--SPPASPPMSPSATPPPQ 725
Query: 160 VVVHVCDSDIEEEEDPKTSPKPKIIQTRRPGLPP 193
+ ++ P SP T P +PP
Sbjct: 726 APPPLAAPPLQVPPSPPASPPMSPSATPPPRVPP 759
>gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 28.5 bits (62), Expect = 3.9
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 89 QTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKY 148
Q P+ G PPQP F SPP+ P P +P+ + A +LG GE Y
Sbjct: 176 QLPKASG------PPQPPAFFSFSPPTGP----SPSLAQSPLKLFP-SQATHQLGEGESY 224
Query: 149 ELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPK 182
+ H+ S I + P TS K +
Sbjct: 225 SMPTAFPGLAPTSPHLEGSGI--LDTPVTSTKAR 256
>gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 28.5 bits (62), Expect = 3.9
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 89 QTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKY 148
Q P+ G PPQP F SPP+ P P +P+ + A +LG GE Y
Sbjct: 176 QLPKASG------PPQPPAFFSFSPPTGP----SPSLAQSPLKLFP-SQATHQLGEGESY 224
Query: 149 ELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPK 182
+ H+ S I + P TS K +
Sbjct: 225 SMPTAFPGLAPTSPHLEGSGI--LDTPVTSTKAR 256
>gi|37537554 hypothetical protein FLJ37538 [Homo sapiens]
Length = 841
Score = 28.5 bits (62), Expect = 3.9
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 101 APPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSV 160
APP PA L PP V + + A V + +L A LG GE TE SV
Sbjct: 441 APPAPAA-LLPGPPKDKAVSYTMVYSAVKVTTHSVLPAGPPLGAGE-----PKTEKEISV 494
Query: 161 VVHVCDSDIEEEEDPKTSP 179
+ + + KTSP
Sbjct: 495 LHGMLCTSSRPPVPGKTSP 513
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 28.1 bits (61), Expect = 5.0
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 109 FLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSVVVHVCDSD 168
F++ P PV P + + + L +A + A +S PS V S
Sbjct: 381 FMMMPHPLIPVSLPPASVTMAMSQMNHLSTIANMAAA------AQVQSPPS---RVETSV 431
Query: 169 IEEEEDPKTSPKPKIIQTRRPGLPPS 194
I+E SP P + + RRPG PS
Sbjct: 432 IKERVPDSPSPAPSLEEGRRPGSHPS 457
>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
Length = 374
Score = 28.1 bits (61), Expect = 5.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 94 DGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATP 129
D ++LHL+PP P Q PS P +P+ + P
Sbjct: 132 DLEQLHLSPPPPPPQAPAEGPSVQPGPLRPMEEELP 167
>gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens]
Length = 373
Score = 28.1 bits (61), Expect = 5.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 94 DGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATP 129
D ++LHL+PP P Q PS P +P+ + P
Sbjct: 132 DLEQLHLSPPPPPPQAPAEGPSVQPGPLRPMEEELP 167
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 28.1 bits (61), Expect = 5.0
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 100 LAPPQPAKQFLISPPSSPPVGWQP--INDATPVLNY-----DLLYAVAKLGPGEKYELHA 152
L PP P Q SPPS PP P ++ + P L++ + A+ +L + L
Sbjct: 227 LPPPPPLAQVAPSPPSPPPPPRPPPTLSASDPSLDFLRAQQETANAIRELAGTLRQGLAK 286
Query: 153 GTESTPSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRPGLPP 193
+E+ +++ + + ++ P P P RP LPP
Sbjct: 287 LSEALSALLPLLPGTPVDSLPPPLPPPPPP-PPPPRPVLPP 326
>gi|19882241 immunoglobulin superfamily, DCC subclass, member 4
[Homo sapiens]
Length = 1250
Score = 28.1 bits (61), Expect = 5.0
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 124 INDATPVLNYDLLYAVAKLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPKI 183
+ D P +Y+ Y VA +L A STP++V + D + +SP P
Sbjct: 490 VRDLEPNTDYEF-YVVAYS------QLGASRTSTPALVHTLDDVPSAAPQLSLSSPNPSD 542
Query: 184 IQTRRPGLPPSVSN 197
I+ LPPS+SN
Sbjct: 543 IRVAWLPLPPSLSN 556
>gi|148539628 discs, large homolog 1 isoform 1 [Homo sapiens]
Length = 904
Score = 27.7 bits (60), Expect = 6.6
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 99 HLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGPGEKYELHAGTESTP 158
H++P +P + L SPP+ P + P+ P N +L + + P ++ + TP
Sbjct: 156 HISPIKPTEAVLPSPPTVPVIPVLPV----PAENTVILPTIPQANP-PPVLVNTDSLETP 210
Query: 159 SVVVHVCDSDIEEEE 173
+ V+ D+D E EE
Sbjct: 211 T-YVNGTDADYEYEE 224
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,338,302
Number of Sequences: 37866
Number of extensions: 469141
Number of successful extensions: 2056
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2013
Number of HSP's gapped (non-prelim): 60
length of query: 197
length of database: 18,247,518
effective HSP length: 97
effective length of query: 100
effective length of database: 14,574,516
effective search space: 1457451600
effective search space used: 1457451600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.