Guide to the Human Genome
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Name: RCAN2 Sequence: fasta or formatted (197aa) NCBI GI: 116256477
Description:

Down syndrome critical region gene 1-like 1 protein

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         12           2
 C cysteine            2.0          4           1
 D aspartate           6.1         12           2
 E glutamate           7.1         14           4
 F phenylalanine       5.1         10           1
 G glycine             4.1          8           1
 H histidine           2.0          4           1
 I isoleucine          3.6          7           2
 K lysine              7.1         14           2
 L leucine             7.6         15           2
 M methionine          1.0          2           1
 N asparagine          3.0          6           1
 P proline            10.7         21           2
 Q glutamine           4.6          9           1
 R arginine            4.6          9           2
 S serine              7.1         14           2
 T threonine           6.1         12           1
 V valine              9.1         18           3
 W tryptophan          0.5          1           1
 Y tyrosine            2.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Down syndrome critical region gene 1-like 1 protein... 
RCAN3                 0.613   Down syndrome critical region gene 1-like 2 
RCAN1                 0.584   calcipressin 1 isoform c 
RCAN1                 0.566   calcipressin 1 isoform a 
RCAN1                 0.347   calcipressin 1 isoform b 
PELP1                 0.032   proline, glutamic acid and leucine rich protein 1 [...
YAP1                  0.024   Yes-associated protein 1, 65kDa isoform 2 
YAP1                  0.024   Yes-associated protein 1, 65kDa isoform 1 
PCDH15                0.021   protocadherin 15 isoform CD2-1 precursor 
TNRC6B                0.016   trinucleotide repeat containing 6B isoform 2 
TNRC6B                0.016   trinucleotide repeat containing 6B isoform 3 
TNRC6B                0.016   trinucleotide repeat containing 6B isoform 1 
GARNL4                0.016   GTPase activating Rap/RanGAP domain-like 4 isoform ...
GARNL4                0.016   GTPase activating Rap/RanGAP domain-like 4 isoform ...
SPESP1                0.013   sperm equatorial segment protein 1 
GSG1                  0.013   germ cell associated 1 isoform 1 
MLL3                  0.011   myeloid/lymphoid or mixed-lineage leukemia 3 
ABI3BP                0.011   ABI gene family, member 3 (NESH) binding protein [Ho...
SFRS16                0.011   splicing factor, arginine/serine-rich 16 
RANBP9                0.008   RAN binding protein 9 
FLJ22184              0.008   PREDICTED: hypothetical protein FLJ22184 
NR4A1                 0.008   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A1                 0.008   nuclear receptor subfamily 4, group A, member 1 [Hom...
C7orf51               0.008   hypothetical protein FLJ37538 
DACH1                 0.008   dachshund homolog 1 isoform a 
FBLIM1                0.008   filamin-binding LIM protein-1 isoform b 
FBLIM1                0.008   filamin-binding LIM protein-1 isoform a 
MYPOP                 0.008   Myb protein P42POP 
IGDCC4                0.008   immunoglobulin superfamily, DCC subclass, member 4 [...
DLG1                  0.008   discs, large homolog 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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