Guide to the Human Genome
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Name: LASS3 Sequence: fasta or formatted (383aa) NCBI GI: 116235446
Description:

LAG1 longevity assurance homolog 3

Referenced in:

Sphingomyelin, Ceramides, and Glycolipids

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         17           2
 C cysteine            1.8          7           1
 D aspartate           3.9         15           2
 E glutamate           7.0         27          10
 F phenylalanine       8.6         33           2
 G glycine             3.4         13           1
 H histidine           3.1         12           2
 I isoleucine          7.0         27           2
 K lysine              5.7         22           2
 L leucine            12.0         46           3
 M methionine          2.9         11           1
 N asparagine          2.9         11           1
 P proline             4.2         16           2
 Q glutamine           3.1         12           1
 R arginine            5.5         21           2
 S serine              5.5         21           1
 T threonine           4.4         17           1
 V valine              4.7         18           1
 W tryptophan          4.4         17           1
 Y tyrosine            5.2         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LAG1 longevity assurance homolog 3 
LASS2                 0.506   LAG1 longevity assurance 2 
LASS2                 0.506   LAG1 longevity assurance 2 
LASS4                 0.407   LAG1 homolog, ceramide synthase 4 
LASS5                 0.356   LAG1 homolog, ceramide synthase 5 
LASS6                 0.347   longevity assurance homolog 6 
LASS1                 0.079   LAG1 homolog, ceramide synthase 1 isoform 1 
LASS1                 0.075   LAG1 homolog, ceramide synthase 1 isoform 2 
TRAM1                 0.025   translocation associated membrane protein 1 
TRAM2                 0.019   translocation-associated membrane protein 2 
MYT1L                 0.017   myelin transcription factor 1-like 
C14orf37              0.015   hypothetical protein LOC145407 
BCL11A                0.015   B-cell CLL/lymphoma 11A isoform 1 
BCL11A                0.015   B-cell CLL/lymphoma 11A isoform 2 
PBX3                  0.015   pre-B-cell leukemia homeobox 3 isoform 2 
PBX3                  0.015   pre-B-cell leukemia homeobox 3 isoform 1 
DAXX                  0.014   death-domain associated protein isoform a 
DAXX                  0.014   death-domain associated protein isoform a 
DAXX                  0.014   death-domain associated protein isoform b 
ANO8                  0.014   anoctamin 8 
PBX1                  0.014   pre-B-cell leukemia homeobox 1 
TRAM1L1               0.014   translocation associated membrane protein 1-like 1 ...
TAF7L                 0.013   TATA box binding protein-associated factor, RNA poly...
CDX1                  0.013   caudal type homeobox 1 
SLC24A1               0.013   solute carrier family 24 (sodium/potassium/calcium ex...
TAOK2                 0.013   TAO kinase 2 isoform 1 
TAOK2                 0.013   TAO kinase 2 isoform 2 
PBX2                  0.013   pre-B-cell leukemia homeobox 2 
CDX2                  0.011   caudal type homeobox 2 
SMARCA2               0.011   SWI/SNF-related matrix-associated actin-dependent re...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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