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Search of human proteins with 239508971
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239508971 PREDICTED: hypothetical protein [Homo sapiens]
(369 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749207 PREDICTED: hypothetical protein [Homo sapiens] 775 0.0
gi|239508971 PREDICTED: hypothetical protein [Homo sapiens] 775 0.0
gi|239754648 PREDICTED: hypothetical protein [Homo sapiens] 722 0.0
gi|239743287 PREDICTED: hypothetical protein [Homo sapiens] 409 e-114
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 37 0.022
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 37 0.022
gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo ... 37 0.037
gi|5174545 myocyte enhancer factor 2D [Homo sapiens] 35 0.082
gi|13129078 alveolar soft part sarcoma chromosome region, candid... 35 0.082
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 34 0.24
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 34 0.24
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 34 0.24
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 34 0.24
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 34 0.24
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 33 0.31
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 33 0.41
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 33 0.41
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 33 0.41
gi|194353946 homeobox D12 [Homo sapiens] 32 0.70
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens] 32 0.70
gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor... 32 0.70
gi|153945711 inter-alpha trypsin inhibitor heavy chain precursor... 32 0.70
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 32 0.70
gi|40807447 papillary renal cell carcinoma translocation-associa... 32 0.70
gi|40807450 papillary renal cell carcinoma translocation-associa... 32 0.70
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 32 1.2
gi|239757832 PREDICTED: hypothetical protein [Homo sapiens] 32 1.2
gi|239752343 PREDICTED: hypothetical protein [Homo sapiens] 32 1.2
gi|239746856 PREDICTED: hypothetical protein XP_002343859 [Homo ... 32 1.2
gi|38373671 SEC24-related protein C [Homo sapiens] 32 1.2
>gi|239749207 PREDICTED: hypothetical protein [Homo sapiens]
Length = 369
Score = 775 bits (2001), Expect = 0.0
Identities = 369/369 (100%), Positives = 369/369 (100%)
Query: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA
Sbjct: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
Query: 61 QPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVG 120
QPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVG
Sbjct: 61 QPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVG 120
Query: 121 HPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLGMQ 180
HPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLGMQ
Sbjct: 121 HPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLGMQ 180
Query: 181 PVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTHQH 240
PVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTHQH
Sbjct: 181 PVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTHQH 240
Query: 241 LGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQLCV 300
LGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQLCV
Sbjct: 241 LGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQLCV 300
Query: 301 IPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHRGG 360
IPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHRGG
Sbjct: 301 IPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHRGG 360
Query: 361 SRALPKQRH 369
SRALPKQRH
Sbjct: 361 SRALPKQRH 369
>gi|239508971 PREDICTED: hypothetical protein [Homo sapiens]
Length = 369
Score = 775 bits (2001), Expect = 0.0
Identities = 369/369 (100%), Positives = 369/369 (100%)
Query: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA
Sbjct: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
Query: 61 QPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVG 120
QPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVG
Sbjct: 61 QPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVG 120
Query: 121 HPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLGMQ 180
HPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLGMQ
Sbjct: 121 HPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLGMQ 180
Query: 181 PVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTHQH 240
PVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTHQH
Sbjct: 181 PVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTHQH 240
Query: 241 LGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQLCV 300
LGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQLCV
Sbjct: 241 LGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQLCV 300
Query: 301 IPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHRGG 360
IPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHRGG
Sbjct: 301 IPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHRGG 360
Query: 361 SRALPKQRH 369
SRALPKQRH
Sbjct: 361 SRALPKQRH 369
>gi|239754648 PREDICTED: hypothetical protein [Homo sapiens]
Length = 377
Score = 722 bits (1864), Expect = 0.0
Identities = 352/381 (92%), Positives = 354/381 (92%), Gaps = 16/381 (4%)
Query: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA
Sbjct: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
Query: 61 QPPPHLQRPQVQTNVLLSPRRLSGE------------PQRTRPLPPTTFSNVRVSRGVQG 108
QPPPHLQRPQVQTNVLLSPRR+ G P R T +SRGVQG
Sbjct: 61 QPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQT----GISRGVQG 116
Query: 109 DPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQ 168
DPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQ
Sbjct: 117 DPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQ 176
Query: 169 GLPQACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQK 228
GLPQACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQK
Sbjct: 177 GLPQACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQK 236
Query: 229 IRALILHHTHQHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLR 288
IRALILHHTHQHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLR
Sbjct: 237 IRALILHHTHQHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLR 296
Query: 289 WSCPKAGYQLCVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPA 348
WSCPKAGYQLCVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPA
Sbjct: 297 WSCPKAGYQLCVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPA 356
Query: 349 GRGQQVHAHRGGSRALPKQRH 369
GRGQQVHAHRGGSRALPKQRH
Sbjct: 357 GRGQQVHAHRGGSRALPKQRH 377
>gi|239743287 PREDICTED: hypothetical protein [Homo sapiens]
Length = 191
Score = 409 bits (1052), Expect = e-114
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 179 MQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTH 238
MQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTH
Sbjct: 1 MQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTH 60
Query: 239 QHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQL 298
QHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQL
Sbjct: 61 QHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQL 120
Query: 299 CVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHR 358
CVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHR
Sbjct: 121 CVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHR 180
Query: 359 GGSRALPKQRH 369
GGSRALPKQRH
Sbjct: 181 GGSRALPKQRH 191
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 37.4 bits (85), Expect = 0.022
Identities = 39/133 (29%), Positives = 50/133 (37%), Gaps = 12/133 (9%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
G PSG + G P GE + A G R P G + G P G
Sbjct: 531 GERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGR-PGDAGPQGKVGPSGAPGEDGRPGP 589
Query: 62 PPPHLQRPQVQTNVLLSPRRLSGEPQRT--RPLPPTTFSNVRVSRGVQGDPKDELDLVAV 119
P P R Q P+ +GEP + + LP G++G P + + A
Sbjct: 590 PGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP--------GLRGLPGKDGETGAA 641
Query: 120 GHPHPQGP-GERG 131
G P P GP GERG
Sbjct: 642 GPPGPAGPAGERG 654
Score = 32.3 bits (72), Expect = 0.70
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 77 LSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVA-VGHPHPQGP-------- 127
LSP GE P T S +G +G+P D D+V G P PQGP
Sbjct: 76 LSPEIPFGECCPICPTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRG 135
Query: 128 -----GERGSTVFKDVGVDPGTLGSQSP 150
GE+G+ + +PGT G+ P
Sbjct: 136 DRGDKGEKGAPGPRGRDGEPGTPGNPGP 163
Score = 30.0 bits (66), Expect = 3.5
Identities = 46/166 (27%), Positives = 56/166 (33%), Gaps = 32/166 (19%)
Query: 8 GASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQPPPH-- 65
G S P GAP A G+ G P TG A + G E P GA PP
Sbjct: 999 GPSGEPGKQGAPGASGDRGPPGPVGP----PGLTGPAGEPGREGSP-----GADGPPGRD 1049
Query: 66 ----LQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVGH 121
++ + +T + +P G P P PT R G QG A G
Sbjct: 1050 GAAGVKGDRGETGAVGAPGA-PGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI 1108
Query: 122 PHPQGP----------------GERGSTVFKDVGVDPGTLGSQSPS 151
PQGP G RG T + + PG G Q S
Sbjct: 1109 QGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGAS 1154
Score = 29.3 bits (64), Expect = 5.9
Identities = 41/159 (25%), Positives = 51/159 (32%), Gaps = 24/159 (15%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAG--AAARWPLHTGGAEQFGEEAVPEGAGLG 59
G P G S P G G + A G A +P G A + G G
Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP---GAAGRVGPPGSNGNPGPP 917
Query: 60 AQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAV 119
P P + P +GEP P P G +G+P D+ A
Sbjct: 918 GPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPP---------GEKGEPGDDGPSGAE 968
Query: 120 GHPHPQG----------PGERGSTVFKDVGVDPGTLGSQ 148
G P PQG PG+RG F + G G Q
Sbjct: 969 GPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQ 1007
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 37.4 bits (85), Expect = 0.022
Identities = 39/133 (29%), Positives = 50/133 (37%), Gaps = 12/133 (9%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
G PSG + G P GE + A G R P G + G P G
Sbjct: 462 GERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGR-PGDAGPQGKVGPSGAPGEDGRPGP 520
Query: 62 PPPHLQRPQVQTNVLLSPRRLSGEPQRT--RPLPPTTFSNVRVSRGVQGDPKDELDLVAV 119
P P R Q P+ +GEP + + LP G++G P + + A
Sbjct: 521 PGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP--------GLRGLPGKDGETGAA 572
Query: 120 GHPHPQGP-GERG 131
G P P GP GERG
Sbjct: 573 GPPGPAGPAGERG 585
Score = 30.0 bits (66), Expect = 3.5
Identities = 46/166 (27%), Positives = 56/166 (33%), Gaps = 32/166 (19%)
Query: 8 GASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQPPPH-- 65
G S P GAP A G+ G P TG A + G E P GA PP
Sbjct: 930 GPSGEPGKQGAPGASGDRGPPGPVGP----PGLTGPAGEPGREGSP-----GADGPPGRD 980
Query: 66 ----LQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVGH 121
++ + +T + +P G P P PT R G QG A G
Sbjct: 981 GAAGVKGDRGETGAVGAPGA-PGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI 1039
Query: 122 PHPQGP----------------GERGSTVFKDVGVDPGTLGSQSPS 151
PQGP G RG T + + PG G Q S
Sbjct: 1040 QGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGAS 1085
Score = 29.3 bits (64), Expect = 5.9
Identities = 41/159 (25%), Positives = 51/159 (32%), Gaps = 24/159 (15%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAG--AAARWPLHTGGAEQFGEEAVPEGAGLG 59
G P G S P G G + A G A +P G A + G G
Sbjct: 792 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP---GAAGRVGPPGSNGNPGPP 848
Query: 60 AQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAV 119
P P + P +GEP P P G +G+P D+ A
Sbjct: 849 GPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPP---------GEKGEPGDDGPSGAE 899
Query: 120 GHPHPQG----------PGERGSTVFKDVGVDPGTLGSQ 148
G P PQG PG+RG F + G G Q
Sbjct: 900 GPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQ 938
>gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo
sapiens]
Length = 1150
Score = 36.6 bits (83), Expect = 0.037
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 58 LGAQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPL-PPTTFSNVRVSRGVQ 107
L QP P LQ+PQ + +L P R+ +PQ R L PP+ FS R RG Q
Sbjct: 261 LQTQPQPLLQQPQQKAGLLQPPVRIVSQPQPARRLDPPSRFSG-RNDRGDQ 310
>gi|5174545 myocyte enhancer factor 2D [Homo sapiens]
Length = 521
Score = 35.4 bits (80), Expect = 0.082
Identities = 43/166 (25%), Positives = 58/166 (34%), Gaps = 24/166 (14%)
Query: 4 ATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQP- 62
ATPS S P P A + T+A ++ + G G + QP
Sbjct: 315 ATPSLLSQGLPFSSMPTAYNTDYQLTSAELSSLPAFSSPGGLSLGNVTAWQQPQQPQQPQ 374
Query: 63 ---PPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELD--LV 117
PP Q PQ Q P++ PQ+ L P + SN+ + G P + L
Sbjct: 375 QPQPPQQQPPQPQQPQPQQPQQPQQPPQQQSHLVPVSLSNL-----IPGSPLPHVGAALT 429
Query: 118 AVGHPH------PQGPGERGS------TVFKDVGVDPGTLGSQSPS 151
HPH P P S VF +PG G SP+
Sbjct: 430 VTTHPHISIKSEPVSPSRERSPAPPPPAVFPAARPEPGD-GLSSPA 474
>gi|13129078 alveolar soft part sarcoma chromosome region, candidate
1 [Homo sapiens]
Length = 553
Score = 35.4 bits (80), Expect = 0.082
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 12 FPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQPPPHLQRPQV 71
+ P+G P ++G A A A+A PL +G + G+ + PE A H Q Q
Sbjct: 175 YDPVGKTPGSLGSSASAGQAAASAPLPLESGELSR-GDLSRPEDADTSGPCCEHTQEKQS 233
Query: 72 QTNVLLSP--------RRLSGEPQRTRPL 92
+P +RL G P TRPL
Sbjct: 234 TRAPAAAPFVPFSGGGQRLGGPPGPTRPL 262
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 33.9 bits (76), Expect = 0.24
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 42 GGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVR 101
G A Q +P+ AQPPPH +++ L P++ G R P P +FS +R
Sbjct: 16 GVANQLSHRILPQDGIKRAQPPPHTPATGTRSSYRLLPQKGRGN-LRGAPTAPVSFSRIR 74
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 33.9 bits (76), Expect = 0.24
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 42 GGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVR 101
G A Q +P+ AQPPPH +++ L P++ G R P P +FS +R
Sbjct: 16 GVANQLSHRILPQDGIKRAQPPPHTPATGTRSSYRLLPQKGRGN-LRGAPTAPVSFSRIR 74
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 33.9 bits (76), Expect = 0.24
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 42 GGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVR 101
G A Q +P+ AQPPPH +++ L P++ G R P P +FS +R
Sbjct: 16 GVANQLSHRILPQDGIKRAQPPPHTPATGTRSSYRLLPQKGRGN-LRGAPTAPVSFSRIR 74
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 33.9 bits (76), Expect = 0.24
Identities = 58/225 (25%), Positives = 74/225 (32%), Gaps = 23/225 (10%)
Query: 3 GATPSGASHF--PPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
GA P A+ PP G G AA AAA + GG + G A+ G G G
Sbjct: 133 GAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGL 192
Query: 61 QPPPHLQRPQVQTNVLLSPRRL--SGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVA 118
+P PQ ++ P S P R+ PP + RG G P A
Sbjct: 193 EP---YAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG--GTPGSGAAAAA 247
Query: 119 VGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLG 178
P P S+ G +G PS G G + Q L G
Sbjct: 248 GSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARG 307
Query: 179 MQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWG 223
Q + G Y G P G GPAD + ++ WG
Sbjct: 308 ------YQGYPGG---DYSGGPQ-DGGAGKGPAD----MASQCWG 338
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 33.9 bits (76), Expect = 0.24
Identities = 58/225 (25%), Positives = 74/225 (32%), Gaps = 23/225 (10%)
Query: 3 GATPSGASHF--PPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
GA P A+ PP G G AA AAA + GG + G A+ G G G
Sbjct: 133 GAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGL 192
Query: 61 QPPPHLQRPQVQTNVLLSPRRL--SGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVA 118
+P PQ ++ P S P R+ PP + RG G P A
Sbjct: 193 EP---YAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRG--GTPGSGAAAAA 247
Query: 119 VGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQACRVLG 178
P P S+ G +G PS G G + Q L G
Sbjct: 248 GSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARG 307
Query: 179 MQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWG 223
Q + G Y G P G GPAD + ++ WG
Sbjct: 308 ------YQGYPGG---DYSGGPQ-DGGAGKGPAD----MASQCWG 338
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 33.5 bits (75), Expect = 0.31
Identities = 43/162 (26%), Positives = 56/162 (34%), Gaps = 44/162 (27%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
G P P GGAP A G + +G A P+ TG A G G+G+ A+
Sbjct: 1111 GTLEPGTERRAPETGGAPRAPGAGRLDLGSGGRA--PVGTGTAPGGGP-----GSGVDAK 1163
Query: 62 ------------PPPHLQRPQVQTNVLLSPRRLSGEPQRTRPL--------PPTTFSNVR 101
PPP P+ Q PRRL P R RP P + +
Sbjct: 1164 AGWVDNTRPQPPPPPLPPPPEAQ------PRRLEPAPPRARPEVAPEGEPGAPDSRAGGD 1217
Query: 102 VSRGVQGDPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPG 143
+ GDP P P+ G +F D+G G
Sbjct: 1218 TALSGDGDP-----------PKPERKGPEMPRLFLDLGPPQG 1248
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 33.1 bits (74), Expect = 0.41
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 6 PSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTG---GAEQFGEEAVPEGAGLGAQP 62
PSGA+ PP AP A G +A +++++ G + GEE VP G QP
Sbjct: 842 PSGATALPPTSAAPSAQGSPQ--PSASSSSQFSTSGGPWARERRAGEEPVP-GPMTPTQP 898
Query: 63 PPHLQRPQVQT 73
PP L P ++
Sbjct: 899 PPPLSLPPARS 909
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 33.1 bits (74), Expect = 0.41
Identities = 42/156 (26%), Positives = 56/156 (35%), Gaps = 22/156 (14%)
Query: 6 PSGASHFPPIGGAPVAVGEEAVFTAAGAAAR--WPLHTGGAEQFGEEAVPEGAGLGAQPP 63
P GA+ P I G G + +AG A + P H G A G+ G G +P
Sbjct: 296 PKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPG 355
Query: 64 PHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVGHPH 123
P P GEP + P +G+ G D+ + VG P
Sbjct: 356 PQ------GLPGFSGPPGKEGEPGPRGEIGP---------QGIMGQKGDQGERGPVGQPG 400
Query: 124 PQG----PGERGSTVFKDVGVDPGTLGSQ-SPSQLG 154
PQG GE+G PG G + SP + G
Sbjct: 401 PQGRQGPKGEQGPPGIPGPQGLPGVKGDKGSPGKTG 436
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 33.1 bits (74), Expect = 0.41
Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 18/146 (12%)
Query: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
MG P G + G P VGE + A G G G +P GL
Sbjct: 1345 MGARGPPGRVGPEGLRGIPGPVGEPGLLGAPG-------QMGPPGPLGPSGLP---GLKG 1394
Query: 61 QPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVG 120
P ++ + L+ P +GE + + LP V+ G +GDP + ++G
Sbjct: 1395 DTGPKGEKGHIGLIGLIGPPGEAGE-KGDQGLP-----GVQGPPGPKGDPGPPGPIGSLG 1448
Query: 121 HPHPQGPGERGSTVFKDVGVDPGTLG 146
HP P PG G K PG++G
Sbjct: 1449 HPGP--PGVAGPLGQKGSKGSPGSMG 1472
>gi|194353946 homeobox D12 [Homo sapiens]
Length = 270
Score = 32.3 bits (72), Expect = 0.70
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 10 SHFPPIGGA-----PVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAG---LGAQ 61
S+ P GG P++ A+ AA A+ P GA FG + P AG LG Q
Sbjct: 27 SNLRPNGGQLAALPPISYPRGALPWAATPASCAPAQPAGATAFGGFSQPYLAGSGPLGLQ 86
Query: 62 PPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLP 93
PP P+ Q +P +G +R R P
Sbjct: 87 PPTAKDGPEEQAK-FYAPEAAAGPEERGRTRP 117
>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 32.3 bits (72), Expect = 0.70
Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 19/83 (22%)
Query: 31 AGAAARWPL------HTGGAEQFGE-----EAVPEGAGLGAQPPPHLQRP---QVQTNVL 76
AG A R P GAE + E A P GA A+P P P + + L
Sbjct: 7 AGRAGRGPWIIRGASRPSGAESYSELLSSRPASPRGASFSAEPRPRASLPPPRPARPSHL 66
Query: 77 LSPRRLSGEP-----QRTRPLPP 94
L P+RL G P R LPP
Sbjct: 67 LWPKRLPGRPGRAPGDRRAALPP 89
>gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor 5
isoform 1 [Homo sapiens]
Length = 956
Score = 32.3 bits (72), Expect = 0.70
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 40 HTGGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSN 99
H A E V G G QP P L++P Q + +S + G+P P S
Sbjct: 637 HGMSAAMGPEPVVQSVRGAGTQPGPLLKKP-YQPRIKISKTSVDGDPHFVVDFP---LSR 692
Query: 100 VRVSRGVQGDPKDELDLVA 118
+ V + G P D L LV+
Sbjct: 693 LTVCFNIDGQPGDILRLVS 711
>gi|153945711 inter-alpha trypsin inhibitor heavy chain precursor 5
isoform 2 [Homo sapiens]
Length = 742
Score = 32.3 bits (72), Expect = 0.70
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 40 HTGGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSN 99
H A E V G G QP P L++P Q + +S + G+P P S
Sbjct: 423 HGMSAAMGPEPVVQSVRGAGTQPGPLLKKP-YQPRIKISKTSVDGDPHFVVDFP---LSR 478
Query: 100 VRVSRGVQGDPKDELDLVA 118
+ V + G P D L LV+
Sbjct: 479 LTVCFNIDGQPGDILRLVS 497
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 32.3 bits (72), Expect = 0.70
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 79 PRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVAVGHPHPQG-PGERGSTVFKD 137
PR L G+ R P F R S+G G P + +G P P G PGERG +
Sbjct: 718 PRGLPGDAGREGFPGPPGFIGPRGSKGAVGLPGPDGSPGPIGLPGPDGPPGERG-LPGEV 776
Query: 138 VGVDPGTLGSQS-PSQLG 154
+G PG G P Q G
Sbjct: 777 LGAQPGPRGDAGVPGQPG 794
>gi|40807447 papillary renal cell carcinoma translocation-associated
gene product isoform 1 [Homo sapiens]
Length = 491
Score = 32.3 bits (72), Expect = 0.70
Identities = 35/118 (29%), Positives = 47/118 (39%), Gaps = 15/118 (12%)
Query: 14 PIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQT 73
P P EEAV +G A GG F P+G L PPP + P
Sbjct: 14 PDEAEPEPEEEEAVAPTSGPAL------GGL--FASLPAPKGPAL-LPPPPQMLAPAFPP 64
Query: 74 NVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDL---VAVGHPHPQGPG 128
+LL P +G+P R +P PP F P + + + +G P P+GPG
Sbjct: 65 PLLLPPP--TGDP-RLQPPPPLPFGLGGFPPPPGVSPAEAAGVGEGLGLGLPSPRGPG 119
>gi|40807450 papillary renal cell carcinoma translocation-associated
gene product isoform 2 [Homo sapiens]
Length = 459
Score = 32.3 bits (72), Expect = 0.70
Identities = 35/118 (29%), Positives = 47/118 (39%), Gaps = 15/118 (12%)
Query: 14 PIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQT 73
P P EEAV +G A GG F P+G L PPP + P
Sbjct: 14 PDEAEPEPEEEEAVAPTSGPAL------GGL--FASLPAPKGPAL-LPPPPQMLAPAFPP 64
Query: 74 NVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDL---VAVGHPHPQGPG 128
+LL P +G+P R +P PP F P + + + +G P P+GPG
Sbjct: 65 PLLLPPP--TGDP-RLQPPPPLPFGLGGFPPPPGVSPAEAAGVGEGLGLGLPSPRGPG 119
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 31.6 bits (70), Expect = 1.2
Identities = 45/173 (26%), Positives = 64/173 (36%), Gaps = 39/173 (22%)
Query: 9 ASHFPPIGGAPVAVG---EEAVFTAAG-------AAARWPLHTGGAEQFGEEAVPEGAGL 58
AS P G AP+ E AV + G A PL T G E+ G P+G
Sbjct: 478 ASGVPTDGLAPLTATMAPERAVTSGPGDEEDLAAATTEEPLITAGGEESGSPP-PDG--- 533
Query: 59 GAQPPPHLQRPQVQTNVLLSPRRLSGEPQRTRPLPPTTFSNVRVSRGVQGDPKDELDLVA 118
P L P V ++P + + + P +G +GD +EL
Sbjct: 534 -----PPLPLPTVAPERWITPAQREHVGMKGQAGP----------KGEKGDAGEELP--- 575
Query: 119 VGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLP 171
G P P GP V G + G S +G G+ D+V + + +G P
Sbjct: 576 -GPPEPSGP------VGPTAGAEAEGSGLGWGSDVGSGSGDLVGSEQLLRGPP 621
>gi|239757832 PREDICTED: hypothetical protein [Homo sapiens]
Length = 503
Score = 31.6 bits (70), Expect = 1.2
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 120 GHPHPQGPGERGST-VFKDVGVDPGTLGSQSPS 151
GHP P+G +GST ++ D+ V P G+ SPS
Sbjct: 120 GHPSPEGATAKGSTDIWADLEVGPSWRGALSPS 152
>gi|239752343 PREDICTED: hypothetical protein [Homo sapiens]
Length = 518
Score = 31.6 bits (70), Expect = 1.2
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 120 GHPHPQGPGERGST-VFKDVGVDPGTLGSQSPS 151
GHP P+G +GST ++ D+ V P G+ SPS
Sbjct: 120 GHPSPEGATAKGSTDIWADLEVGPSWRGALSPS 152
>gi|239746856 PREDICTED: hypothetical protein XP_002343859 [Homo
sapiens]
Length = 518
Score = 31.6 bits (70), Expect = 1.2
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 120 GHPHPQGPGERGST-VFKDVGVDPGTLGSQSPS 151
GHP P+G +GST ++ D+ V P G+ SPS
Sbjct: 120 GHPSPEGATAKGSTDIWADLEVGPSWRGALSPS 152
>gi|38373671 SEC24-related protein C [Homo sapiens]
Length = 1094
Score = 31.6 bits (70), Expect = 1.2
Identities = 54/212 (25%), Positives = 80/212 (37%), Gaps = 44/212 (20%)
Query: 6 PSGASHFPPIGGAPVAVGEEAVF--TAAGAAARWPLHTG-----------GAEQFGEEAV 52
P G S PP GAP A +A A G + + G G++ FG
Sbjct: 56 PQGMSRAPPSSGAPPASTAQAPCGQAAYGQFGQGDVQNGPSSTVQMQRLPGSQPFGSPLA 115
Query: 53 PEGAGLGAQPP---PHLQRP-QVQTNVLLSPRRLSGEPQRTRPL------PPTTFSNVRV 102
P +G QPP P+ P Q LS ++SG P PPT+ ++
Sbjct: 116 P----VGNQPPVLQPYGPPPTSAQVATQLSGMQISGAVAPAPPSSGLGFGPPTSLASASG 171
Query: 103 S---RGVQGD-PKDELDLV--AVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLG-- 154
S G+ G P+ + + A GHP Q P +R + P + G + PS G
Sbjct: 172 SFPNSGLYGSYPQGQAPPLSQAQGHPGIQTP-QRSAPSQASSFTPPASGGPRLPSMTGPL 230
Query: 155 -----HGAHDIVVAHHIA---QGLPQACRVLG 178
G + +H++ Q LP ++ G
Sbjct: 231 LPGQSFGGPSVSQPNHVSSPPQALPPGTQMTG 262
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,212,565
Number of Sequences: 37866
Number of extensions: 1135038
Number of successful extensions: 3598
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 3506
Number of HSP's gapped (non-prelim): 192
length of query: 369
length of database: 18,247,518
effective HSP length: 104
effective length of query: 265
effective length of database: 14,309,454
effective search space: 3792005310
effective search space used: 3792005310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.