Guide to the Human Genome
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Name: LOC100294071 Sequence: fasta or formatted (1102aa) NCBI GI: 239508879
Description:

PREDICTED: similar to zinc finger protein 208

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4         37           1
 C cysteine            6.9         76           2
 D aspartate           2.5         27           1
 E glutamate           8.7         96           2
 F phenylalanine       3.9         43           1
 G glycine             5.9         65           2
 H histidine           6.4         70           1
 I isoleucine          5.2         57           2
 K lysine             12.7        140           2
 L leucine             5.5         61           2
 M methionine          1.4         15           1
 N asparagine          4.1         45           1
 P proline             3.9         43           1
 Q glutamine           2.5         28           2
 R arginine            6.4         71           2
 S serine              7.0         77           3
 T threonine           6.6         73           2
 V valine              2.4         26           1
 W tryptophan          1.1         12           1
 Y tyrosine            3.6         40           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to zinc finger protein 208 [Homo... 
ZNF91                 0.476   zinc finger protein 91 
ZNF208                0.450   zinc finger protein 208 
ZNF727                0.446   zinc finger protein 727 
ZNF99                 0.424   zinc finger protein 99 
LOC100292052          0.377   PREDICTED: similar to hCG1773661 
LOC100287226          0.377   PREDICTED: similar to hCG1773661 
LOC100287226          0.377   PREDICTED: hypothetical protein XP_002343677 
ZNF43                 0.347   zinc finger protein 43 
ZNF721                0.339   zinc finger protein 721 
ZNF726                0.331   PREDICTED: zinc finger protein 726 
ZNF726                0.331   PREDICTED: zinc finger protein 726 
ZNF726                0.331   PREDICTED: zinc finger protein 726 
ZNF107                0.328   zinc finger protein 107 
ZNF107                0.328   zinc finger protein 107 
ZNF493                0.327   zinc finger protein 493 isoform 3 
LOC728927             0.310   PREDICTED: hypothetical protein LOC728927 
LOC728927             0.310   PREDICTED: similar to hCG40110 
LOC728927             0.310   PREDICTED: similar to hCG40110 
LOC728927             0.310   PREDICTED: similar to hCG40110 
ZNF728                0.305   PREDICTED: zinc finger protein 728 
ZNF728                0.305   PREDICTED: zinc finger protein 728 
ZNF728                0.305   PREDICTED: zinc finger protein 728 
ZNF595                0.304   zinc finger protein 595 
ZNF429                0.294   zinc finger protein 429 
ZNF735                0.291   zinc finger protein 735 
ZNF254                0.290   zinc finger protein 254 
ZNF93                 0.288   zinc finger protein 93 
ZNF479                0.283   zinc finger protein 479 
ZNF66                 0.281   PREDICTED: zinc finger protein 66 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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