Guide to the Human Genome
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Name: LOC728927 Sequence: fasta or formatted (427aa) NCBI GI: 169170082
Description:

PREDICTED: hypothetical protein LOC728927

Not currently referenced in the text

Other entries for this name:
alt mRNA {427aa} PREDICTED: similar to hCG40110
alt prot {427aa} PREDICTED: similar to hCG40110
alt prot {427aa} PREDICTED: similar to hCG40110
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         16           1
 C cysteine            8.0         34           1
 D aspartate           4.0         17           1
 E glutamate           8.4         36           2
 F phenylalanine       5.6         24           1
 G glycine             5.6         24           1
 H histidine           6.6         28           1
 I isoleucine          3.7         16           2
 K lysine             13.3         57           2
 L leucine             6.3         27           1
 M methionine          0.9          4           1
 N asparagine          3.3         14           2
 P proline             2.8         12           1
 Q glutamine           2.3         10           2
 R arginine            5.6         24           1
 S serine              6.6         28           2
 T threonine           5.9         25           1
 V valine              2.8         12           1
 W tryptophan          1.2          5           1
 Y tyrosine            3.3         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC728927 
LOC728927             1.000   PREDICTED: similar to hCG40110 
LOC728927             0.998   PREDICTED: similar to hCG40110 
LOC728927             0.998   PREDICTED: similar to hCG40110 
ZNF727                0.807   zinc finger protein 727 
LOC100294071          0.805   PREDICTED: similar to zinc finger protein 208 [Homo...
ZNF92                 0.602   zinc finger protein 92 isoform 2 
ZNF682                0.580   zinc finger protein 682 isoform 1 
ZNF626                0.574   zinc finger protein 626 isoform 1 
ZNF479                0.573   zinc finger protein 479 
ZNF680                0.573   zinc finger protein 680 isoform 1 
ZNF431                0.570   zinc finger protein 431 
ZNF429                0.569   zinc finger protein 429 
ZNF726                0.568   PREDICTED: zinc finger protein 726 
ZNF726                0.568   PREDICTED: zinc finger protein 726 
ZNF726                0.568   PREDICTED: zinc finger protein 726 
ZNF737                0.566   zinc finger protein 737 
ZNF737                0.566   PREDICTED: zinc finger protein 737 
ZNF737                0.566   PREDICTED: zinc finger protein 737 
ZNF737                0.566   PREDICTED: zinc finger protein 737 
ZNF716                0.566   zinc finger protein 716 
LOC646864             0.565   PREDICTED: similar to hCG36734 
LOC646864             0.565   PREDICTED: similar to hCG36734 
LOC646864             0.565   PREDICTED: similar to hCG36734 
ZNF273                0.563   zinc finger protein 273 
ZNF66                 0.560   PREDICTED: zinc finger protein 66 
ZNF66                 0.560   PREDICTED: zinc finger protein 66 
ZNF66                 0.560   PREDICTED: zinc finger protein 66 
ZNF85                 0.555   zinc finger protein 85 
ZNF708                0.551   zinc finger protein 708 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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