Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 238859545
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|238859545 tubby like protein 2 [Homo sapiens]
(520 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|238859545 tubby like protein 2 [Homo sapiens] 1065 0.0
gi|29826279 tubby isoform b [Homo sapiens] 331 1e-90
gi|19923167 tubby isoform a [Homo sapiens] 330 2e-90
gi|157266334 tubby like protein 1 [Homo sapiens] 302 4e-82
gi|238550202 tubby like protein 3 isoform 2 [Homo sapiens] 274 2e-73
gi|21536436 tubby like protein 3 isoform 1 [Homo sapiens] 274 2e-73
gi|55953100 tubby like protein 4 isoform 1 [Homo sapiens] 68 2e-11
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 34 0.28
gi|55953102 tubby like protein 4 isoform 2 [Homo sapiens] 34 0.28
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 34 0.37
gi|122937416 hypothetical protein LOC85452 [Homo sapiens] 33 0.63
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 33 0.63
gi|45643129 guanine nucleotide binding protein-like 3 isoform 2 ... 32 1.1
gi|45643127 guanine nucleotide binding protein-like 3 isoform 2 ... 32 1.1
gi|45593130 guanine nucleotide binding protein-like 3 isoform 1 ... 32 1.1
gi|163644316 hypothetical protein LOC23255 [Homo sapiens] 32 1.4
gi|29789008 Huntingtin interacting protein C isoform 2 [Homo sap... 32 1.4
gi|72534686 Huntingtin interacting protein C isoform 1 [Homo sap... 32 1.4
gi|51093836 hypothetical protein LOC126859 isoform 1 [Homo sapiens] 32 1.8
gi|51093834 hypothetical protein LOC126859 isoform 2 [Homo sapiens] 32 1.8
gi|58743365 ring finger protein 157 [Homo sapiens] 32 1.8
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 31 2.4
gi|239752224 PREDICTED: hypothetical protein XP_002348163 [Homo ... 31 3.1
gi|239750077 PREDICTED: hypothetical protein [Homo sapiens] 31 3.1
gi|118498364 dapper 1 isoform 2 [Homo sapiens] 31 3.1
gi|24158478 dapper 1 isoform 1 [Homo sapiens] 31 3.1
gi|215422383 proline rich Gla (G-carboxyglutamic acid) 1 [Homo s... 31 3.1
gi|4506135 proline rich Gla (G-carboxyglutamic acid) 1 [Homo sap... 31 3.1
gi|223646113 Sp9 transcription factor homolog [Homo sapiens] 30 4.1
gi|57864582 hornerin [Homo sapiens] 30 4.1
>gi|238859545 tubby like protein 2 [Homo sapiens]
Length = 520
Score = 1065 bits (2753), Expect = 0.0
Identities = 520/520 (100%), Positives = 520/520 (100%)
Query: 1 MSQDNDTLMRDILGHELAAMRLQKLEQQRRLFEKKQRQKRQELLMVQANPDASPWLWRSC 60
MSQDNDTLMRDILGHELAAMRLQKLEQQRRLFEKKQRQKRQELLMVQANPDASPWLWRSC
Sbjct: 1 MSQDNDTLMRDILGHELAAMRLQKLEQQRRLFEKKQRQKRQELLMVQANPDASPWLWRSC 60
Query: 61 LREERLLGDRGLGNPFLRKKVSEAHLPSGIHSALGTVSCGGDGRGERGLPTPRTEAVFRN 120
LREERLLGDRGLGNPFLRKKVSEAHLPSGIHSALGTVSCGGDGRGERGLPTPRTEAVFRN
Sbjct: 61 LREERLLGDRGLGNPFLRKKVSEAHLPSGIHSALGTVSCGGDGRGERGLPTPRTEAVFRN 120
Query: 121 LGLQSPFLSWLPDNSDAELEEVSVENGSVSPPPFKQSPRIRRKGWQAHQRPGTRAEGESD 180
LGLQSPFLSWLPDNSDAELEEVSVENGSVSPPPFKQSPRIRRKGWQAHQRPGTRAEGESD
Sbjct: 121 LGLQSPFLSWLPDNSDAELEEVSVENGSVSPPPFKQSPRIRRKGWQAHQRPGTRAEGESD 180
Query: 181 SQDMGDAHKSPNMGPNPGMDGDCVYENLAFQKEEDLEKKREASESTGTNSSAAHNEELSK 240
SQDMGDAHKSPNMGPNPGMDGDCVYENLAFQKEEDLEKKREASESTGTNSSAAHNEELSK
Sbjct: 181 SQDMGDAHKSPNMGPNPGMDGDCVYENLAFQKEEDLEKKREASESTGTNSSAAHNEELSK 240
Query: 241 ALKGEGGTDSDHMRHEASLAIRSPCPGLEEDMEAYVLRPALPGTMMQCYLTRDKHGVDKG 300
ALKGEGGTDSDHMRHEASLAIRSPCPGLEEDMEAYVLRPALPGTMMQCYLTRDKHGVDKG
Sbjct: 241 ALKGEGGTDSDHMRHEASLAIRSPCPGLEEDMEAYVLRPALPGTMMQCYLTRDKHGVDKG 300
Query: 301 LFPLYYLYLETSDSLQRFLLAGRKRRRSKTSNYLISLDPTHLSRDGDNFVGKVRSNVFST 360
LFPLYYLYLETSDSLQRFLLAGRKRRRSKTSNYLISLDPTHLSRDGDNFVGKVRSNVFST
Sbjct: 301 LFPLYYLYLETSDSLQRFLLAGRKRRRSKTSNYLISLDPTHLSRDGDNFVGKVRSNVFST 360
Query: 361 KFTIFDNGVNPDREHLTRNTARIRQELGAVCYEPNVLGYLGPRKMTVILPGTNSQNQRIN 420
KFTIFDNGVNPDREHLTRNTARIRQELGAVCYEPNVLGYLGPRKMTVILPGTNSQNQRIN
Sbjct: 361 KFTIFDNGVNPDREHLTRNTARIRQELGAVCYEPNVLGYLGPRKMTVILPGTNSQNQRIN 420
Query: 421 VQPLNEQESLLSRYQRGDKQGLLLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIVDP 480
VQPLNEQESLLSRYQRGDKQGLLLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIVDP
Sbjct: 421 VQPLNEQESLLSRYQRGDKQGLLLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIVDP 480
Query: 481 KHQEHLVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN 520
KHQEHLVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN
Sbjct: 481 KHQEHLVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN 520
>gi|29826279 tubby isoform b [Homo sapiens]
Length = 506
Score = 331 bits (848), Expect = 1e-90
Identities = 202/522 (38%), Positives = 290/522 (55%), Gaps = 34/522 (6%)
Query: 5 NDTLMRDILGHELAAMRLQKLEQQRRLFEKKQRQKRQELLMVQANPDASPWLWRSCLREE 64
+D + +L E +R QKL++QR L E+KQ++KRQE LMVQAN D P R+ EE
Sbjct: 7 SDWIPYSVLDDEGRNLRQQKLDRQRALLEQKQKKKRQEPLMVQANADGRPRSRRARQSEE 66
Query: 65 RLLGDRGLGNPFLRKKVSEAHLPSGIHSALGTVSCGGDGRGERGLPTPRTEAVFRNLGLQ 124
+ L +L S ++ S L +V G R RT+A G
Sbjct: 67 QA----PLVESYLSSSGSTSYQVQEADS-LASVQLGAT-RPTAPASAKRTKAAATAGG-- 118
Query: 125 SPFLSWLPDNSDAELEEVSVENGSVSPPPFKQSPRIRRKGWQAHQRPGTRAEGESD-SQD 183
A E+ G+ P + +A G+SD +QD
Sbjct: 119 --------QGGAARKEKKGKHKGTSGPAALAEDKS------EAQGPVQILTVGQSDHAQD 164
Query: 184 MGDAHKSPNMGPNPGMDGDCVYENLAFQKEEDLEKKREASESTGTNSSAAHNEELSKALK 243
G+ P+ G D + ++ E E ++SS +L+ +
Sbjct: 165 AGETAAGGGERPS-GQDLRATMQRKGISSSMSFDEDEEDEEENSSSSS-----QLNSNTR 218
Query: 244 GEGGTDSDHMRHEASL----AIRSPCPGLEEDMEAYVLRPALPGTMMQCYLTRDKHGVDK 299
T +R AS A P +D+E + LRPA G ++C +TRDK G+D+
Sbjct: 219 PSSATSRKSVREAASAPSPTAPEQPVDVEVQDLEEFALRPAPQGITIKCRITRDKKGMDR 278
Query: 300 GLFPLYYLYLETSDSLQRFLLAGRKRRRSKTSNYLISLDPTHLSRDGDNFVGKVRSNVFS 359
G++P Y+L+L+ D + FLLAGRKR++SKTSNYLIS+DPT LSR GD+++GK+RSN+
Sbjct: 279 GMYPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMG 338
Query: 360 TKFTIFDNGVNPDR-EHLTRNTARIRQELGAVCYEPNVLGYLGPRKMTVILPGTNSQNQR 418
TKFT++DNGVNP + T + +RQEL AVCYE NVLG+ GPRKM+VI+PG N ++R
Sbjct: 339 TKFTVYDNGVNPQKASSSTLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHER 398
Query: 419 INVQPLNEQESLLSRYQRGDKQGLLLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIV 478
++++P NE E+LL+R+Q + + ++ L NKTP W+ + Y LNFHGRVT+ASVKNFQI+
Sbjct: 399 VSIRPRNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQII 458
Query: 479 DPKHQEHLVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN 520
+++V+QFGRV D FTMD+ +P LQAF+I LSSF+
Sbjct: 459 HGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFD 500
>gi|19923167 tubby isoform a [Homo sapiens]
Length = 561
Score = 330 bits (845), Expect = 2e-90
Identities = 201/515 (39%), Positives = 287/515 (55%), Gaps = 34/515 (6%)
Query: 12 ILGHELAAMRLQKLEQQRRLFEKKQRQKRQELLMVQANPDASPWLWRSCLREERLLGDRG 71
+L E +R QKL++QR L E+KQ++KRQE LMVQAN D P R+ EE+
Sbjct: 69 VLDDEGRNLRQQKLDRQRALLEQKQKKKRQEPLMVQANADGRPRSRRARQSEEQA----P 124
Query: 72 LGNPFLRKKVSEAHLPSGIHSALGTVSCGGDGRGERGLPTPRTEAVFRNLGLQSPFLSWL 131
L +L S ++ S L +V G R RT+A G
Sbjct: 125 LVESYLSSSGSTSYQVQEADS-LASVQLGAT-RPTAPASAKRTKAAATAGG--------- 173
Query: 132 PDNSDAELEEVSVENGSVSPPPFKQSPRIRRKGWQAHQRPGTRAEGESD-SQDMGDAHKS 190
A E+ G+ P + +A G+SD +QD G+
Sbjct: 174 -QGGAARKEKKGKHKGTSGPAALAEDKS------EAQGPVQILTVGQSDHAQDAGETAAG 226
Query: 191 PNMGPNPGMDGDCVYENLAFQKEEDLEKKREASESTGTNSSAAHNEELSKALKGEGGTDS 250
P+ G D + ++ E E ++SS +L+ + T
Sbjct: 227 GGERPS-GQDLRATMQRKGISSSMSFDEDEEDEEENSSSSS-----QLNSNTRPSSATSR 280
Query: 251 DHMRHEASL----AIRSPCPGLEEDMEAYVLRPALPGTMMQCYLTRDKHGVDKGLFPLYY 306
+R AS A P +D+E + LRPA G ++C +TRDK G+D+G++P Y+
Sbjct: 281 KSVREAASAPSPTAPEQPVDVEVQDLEEFALRPAPQGITIKCRITRDKKGMDRGMYPTYF 340
Query: 307 LYLETSDSLQRFLLAGRKRRRSKTSNYLISLDPTHLSRDGDNFVGKVRSNVFSTKFTIFD 366
L+L+ D + FLLAGRKR++SKTSNYLIS+DPT LSR GD+++GK+RSN+ TKFT++D
Sbjct: 341 LHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYD 400
Query: 367 NGVNPDR-EHLTRNTARIRQELGAVCYEPNVLGYLGPRKMTVILPGTNSQNQRINVQPLN 425
NGVNP + T + +RQEL AVCYE NVLG+ GPRKM+VI+PG N ++R++++P N
Sbjct: 401 NGVNPQKASSSTLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVSIRPRN 460
Query: 426 EQESLLSRYQRGDKQGLLLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIVDPKHQEH 485
E E+LL+R+Q + + ++ L NKTP W+ + Y LNFHGRVT+ASVKNFQI+ ++
Sbjct: 461 EHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDY 520
Query: 486 LVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN 520
+V+QFGRV D FTMD+ +P LQAF+I LSSF+
Sbjct: 521 IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFD 555
>gi|157266334 tubby like protein 1 [Homo sapiens]
Length = 542
Score = 302 bits (774), Expect = 4e-82
Identities = 173/400 (43%), Positives = 246/400 (61%), Gaps = 20/400 (5%)
Query: 131 LPDNSDAELEEVSVEN-------GSVSPPPFKQSPRIRRKGWQAHQRPGTRAEGESDSQD 183
L + S A+L+E + GS PPP + R+R K +A GT+ ++ +
Sbjct: 147 LREKSSADLKERRAKAQGPRGDLGSPDPPP--KPLRVRNK--EAPAGEGTKMR-KTKKKG 201
Query: 184 MGDAHKSPNMGPNPGMDGDCVYENLAFQKEEDLEKKREASESTGTNSSAAHNEELSKALK 243
G+A K P+ P L + D + ++ G EE + +K
Sbjct: 202 SGEADKDPSGSPASARKSPAAMF-LVGEGSPDKKALKKKGTPKGARKEEEEEEEAATVIK 260
Query: 244 --GEGGTDSDHMRHEASLAIRSPCPGLEEDM-EAYVLRPALPGTMMQCYLTRDKHGVDKG 300
+ G + +A R+P P +E D +VLRPA G ++C LTRDK G+D+G
Sbjct: 261 KSNQKGKAKGKGKKKAKEE-RAPSPPVEVDEPREFVLRPAPQGRTVRCRLTRDKKGMDRG 319
Query: 301 LFPLYYLYLETSDSLQRFLLAGRKRRRSKTSNYLISLDPTHLSRDGDNFVGKVRSNVFST 360
++P Y+L+L+T + FLLAGRKR+RSKT+NYLIS+DPT+LSR G+NF+GK+RSN+
Sbjct: 320 MYPSYFLHLDTEKKV--FLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGN 377
Query: 361 KFTIFDNGVNPDREHLTRNTARIRQELGAVCYEPNVLGYLGPRKMTVILPGTNSQNQRIN 420
+FT+FDNG NP R + T N A +RQEL AV YE NVLG+ GPR+MTVI+PG +++N+R+
Sbjct: 378 RFTVFDNGQNPQRGYST-NVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMSAENERVP 436
Query: 421 VQPLNEQESLLSRYQRGDKQGLLLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIVDP 480
++P N + LL R+Q + L+ LHNK P W+ ++G YTLNF GRVT+ASVKNFQIV
Sbjct: 437 IRPRNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA 496
Query: 481 KHQEHLVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN 520
+++VLQFGRV D FT+D+ +P LQAF+I LSSF+
Sbjct: 497 DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 536
>gi|238550202 tubby like protein 3 isoform 2 [Homo sapiens]
Length = 501
Score = 274 bits (700), Expect = 2e-73
Identities = 146/335 (43%), Positives = 205/335 (61%), Gaps = 9/335 (2%)
Query: 186 DAHKSPNMGPNPGMDGDCVYENLAFQKEEDLEKKREASESTGTNSSAAHNEELSKALKGE 245
DA + + PG+ E L QK + E E+ G + SA E + +
Sbjct: 111 DAENTVDTASKPGLQ-----ERL--QKHDISESVNFDEETDGISQSACL--ERPNSASSQ 161
Query: 246 GGTDSDHMRHEASLAIRSPCPGLEEDMEAYVLRPALPGTMMQCYLTRDKHGVDKGLFPLY 305
TD+ + G +D+E +V PA G ++C + RDK G+D+GLFP Y
Sbjct: 162 NSTDTGTSGSATAAQPADNLLGDIDDLEDFVYSPAPQGVTVRCRIIRDKRGMDRGLFPTY 221
Query: 306 YLYLETSDSLQRFLLAGRKRRRSKTSNYLISLDPTHLSRDGDNFVGKVRSNVFSTKFTIF 365
Y+YLE ++ + FLLA RKR++SKT+NYLIS+DP LSR+G+++VGK+RSN+ TKFT++
Sbjct: 222 YMYLEKEENQKIFLLAARKRKKSKTANYLISIDPVDLSREGESYVGKLRSNLMGTKFTVY 281
Query: 366 DNGVNPDREHLTRNTARIRQELGAVCYEPNVLGYLGPRKMTVILPGTNSQNQRINVQPLN 425
D G+ P + A RQEL A+ YE NVLG+ GPRKM+VI+PG +++I QP N
Sbjct: 282 DRGICPMKGRGLVGAAHTRQELAAISYETNVLGFKGPRKMSVIIPGMTLNHKQIPYQPQN 341
Query: 426 EQESLLSRYQRGDKQGLLLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIVDPKHQEH 485
+SLLSR+Q + L+ LHNK P W+ + Y LNF GRVT+ASVKNFQIV ++
Sbjct: 342 NHDSLLSRWQNRTMENLVELHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQIVHKNDPDY 401
Query: 486 LVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN 520
+V+QFGRV D FT+D+ +P +QAF I LSSF+
Sbjct: 402 IVMQFGRVADDVFTLDYNYPLCAVQAFGIGLSSFD 436
Score = 43.1 bits (100), Expect = 6e-04
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 12 ILGHELAAMRLQKLEQQRRLFEKKQRQKRQELLMVQANPDA 52
+ E+ MR KL+ QR L EK+QR+KR E MVQ NP+A
Sbjct: 15 VFHEEMMKMRQAKLDYQRLLLEKRQRKKRLEPFMVQPNPEA 55
>gi|21536436 tubby like protein 3 isoform 1 [Homo sapiens]
Length = 442
Score = 274 bits (700), Expect = 2e-73
Identities = 146/335 (43%), Positives = 205/335 (61%), Gaps = 9/335 (2%)
Query: 186 DAHKSPNMGPNPGMDGDCVYENLAFQKEEDLEKKREASESTGTNSSAAHNEELSKALKGE 245
DA + + PG+ E L QK + E E+ G + SA E + +
Sbjct: 111 DAENTVDTASKPGLQ-----ERL--QKHDISESVNFDEETDGISQSACL--ERPNSASSQ 161
Query: 246 GGTDSDHMRHEASLAIRSPCPGLEEDMEAYVLRPALPGTMMQCYLTRDKHGVDKGLFPLY 305
TD+ + G +D+E +V PA G ++C + RDK G+D+GLFP Y
Sbjct: 162 NSTDTGTSGSATAAQPADNLLGDIDDLEDFVYSPAPQGVTVRCRIIRDKRGMDRGLFPTY 221
Query: 306 YLYLETSDSLQRFLLAGRKRRRSKTSNYLISLDPTHLSRDGDNFVGKVRSNVFSTKFTIF 365
Y+YLE ++ + FLLA RKR++SKT+NYLIS+DP LSR+G+++VGK+RSN+ TKFT++
Sbjct: 222 YMYLEKEENQKIFLLAARKRKKSKTANYLISIDPVDLSREGESYVGKLRSNLMGTKFTVY 281
Query: 366 DNGVNPDREHLTRNTARIRQELGAVCYEPNVLGYLGPRKMTVILPGTNSQNQRINVQPLN 425
D G+ P + A RQEL A+ YE NVLG+ GPRKM+VI+PG +++I QP N
Sbjct: 282 DRGICPMKGRGLVGAAHTRQELAAISYETNVLGFKGPRKMSVIIPGMTLNHKQIPYQPQN 341
Query: 426 EQESLLSRYQRGDKQGLLLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIVDPKHQEH 485
+SLLSR+Q + L+ LHNK P W+ + Y LNF GRVT+ASVKNFQIV ++
Sbjct: 342 NHDSLLSRWQNRTMENLVELHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQIVHKNDPDY 401
Query: 486 LVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN 520
+V+QFGRV D FT+D+ +P +QAF I LSSF+
Sbjct: 402 IVMQFGRVADDVFTLDYNYPLCAVQAFGIGLSSFD 436
Score = 43.1 bits (100), Expect = 6e-04
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 12 ILGHELAAMRLQKLEQQRRLFEKKQRQKRQELLMVQANPDA 52
+ E+ MR KL+ QR L EK+QR+KR E MVQ NP+A
Sbjct: 15 VFHEEMMKMRQAKLDYQRLLLEKRQRKKRLEPFMVQPNPEA 55
>gi|55953100 tubby like protein 4 isoform 1 [Homo sapiens]
Length = 1543
Score = 68.2 bits (165), Expect = 2e-11
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 437 GDKQGLLLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIVDPKHQEHLVLQFGRVGPD 496
G + + ++ NK P W++ VY L+F GRVT+ S KNFQI + + V+QFGR+
Sbjct: 1459 GSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQI---ELEGRQVMQFGRIDGS 1515
Query: 497 TFTMDFCFPFSPLQAFSICLSS 518
+ +DF +PFS +QAF++ L++
Sbjct: 1516 AYILDFQYPFSAVQAFAVALAN 1537
Score = 34.3 bits (77), Expect = 0.28
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 13/63 (20%)
Query: 348 NFVGKVRSNVFSTKFTIFDNGVNPDREHLTRNTARIRQELGAVCYEPNVLGYLGPRKMTV 407
N++ +V SN++ TKF I A + LGAV Y+ ++L +L PR+MT+
Sbjct: 594 NYLAQVTSNIWGTKFKI------------VGLAAFLPTNLGAVIYKTSLL-HLQPRQMTI 640
Query: 408 ILP 410
LP
Sbjct: 641 YLP 643
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 34.3 bits (77), Expect = 0.28
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 145 ENGSVSPPPFKQSPR-IRRKGWQAHQRPGTRAEGESDSQDMGDAHKSPNMG 194
E G+ PPP PR R KG +A QR G+ EG S S A K+P G
Sbjct: 184 EGGAPQPPP----PRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTG 230
>gi|55953102 tubby like protein 4 isoform 2 [Homo sapiens]
Length = 678
Score = 34.3 bits (77), Expect = 0.28
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 13/63 (20%)
Query: 348 NFVGKVRSNVFSTKFTIFDNGVNPDREHLTRNTARIRQELGAVCYEPNVLGYLGPRKMTV 407
N++ +V SN++ TKF I A + LGAV Y+ ++L +L PR+MT+
Sbjct: 594 NYLAQVTSNIWGTKFKI------------VGLAAFLPTNLGAVIYKTSLL-HLQPRQMTI 640
Query: 408 ILP 410
LP
Sbjct: 641 YLP 643
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 33.9 bits (76), Expect = 0.37
Identities = 37/203 (18%), Positives = 82/203 (40%), Gaps = 9/203 (4%)
Query: 142 VSVENGSVSPPPFKQSPRIRRKGWQAHQRPGTRAEGESDSQDMGDAHKSPNMGPNPGMDG 201
V+ ++P P + PR+ ++G ++ + +E S S + S + +
Sbjct: 2105 VAARTEPLTPNPASKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSS 2164
Query: 202 DCVYENLAFQKEEDLEKKREASESTGTNSSAAHNEELSKALKGEGGTDSDHMRHEASLAI 261
+ + +S S+ ++S + ++E +A K E T HM+ ++
Sbjct: 2165 SSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDE-EEAQKRESTT---HMKAYDEESV 2220
Query: 262 RSPCPGLEEDMEAYVLRPALPGTMMQCYLTRDKHGVDKGLFPLYYLYLETSDSLQRFLLA 321
S +E +++ + GT Y+ + + + +P + + DS+ + +L
Sbjct: 2221 ASLSTTQDETQDSFQMN---NGTPESAYILQGGYMLAASYWPKDRVMINRLDSICQTVLK 2277
Query: 322 GR--KRRRSKTSNYLISLDPTHL 342
G+ RRS +N + S T L
Sbjct: 2278 GKWPSARRSYDANTVASFYTTKL 2300
>gi|122937416 hypothetical protein LOC85452 [Homo sapiens]
Length = 762
Score = 33.1 bits (74), Expect = 0.63
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 10 RDILGHELAAMRLQKLEQQRRLFEKKQRQKRQELL 44
RD H + R Q+LE Q+R FE++Q+ ++QE++
Sbjct: 329 RDAFRHLVHQRRRQELEAQKRAFEEEQKLRKQEII 363
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 33.1 bits (74), Expect = 0.63
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 137 AELEEVSVENGSVSPPPFKQSPRIRR--KGWQAHQRPGTRA----EGESDSQDMGDAHKS 190
+ELE E+ +PPP + +PR+R+ G + +RPGT A E D G K
Sbjct: 43 SELEPEPREDDVEAPPPPEPTPRVRKAQAGGKPGKRPGTAAEVPPEKTKDKGKKGKKDKG 102
Query: 191 PNMGPNPGMDG 201
P + P ++G
Sbjct: 103 PKV-PKESLEG 112
>gi|45643129 guanine nucleotide binding protein-like 3 isoform 2
[Homo sapiens]
Length = 537
Score = 32.3 bits (72), Expect = 1.1
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 16 ELAAMRLQKLEQQRRLFEKKQRQKRQELLMVQANPDASP 54
EL RL++L+QQ++L +K+ +K+++L + NPD P
Sbjct: 53 ELRKQRLEELKQQQKLDRQKELEKKRKL---ETNPDIKP 88
>gi|45643127 guanine nucleotide binding protein-like 3 isoform 2
[Homo sapiens]
Length = 537
Score = 32.3 bits (72), Expect = 1.1
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 16 ELAAMRLQKLEQQRRLFEKKQRQKRQELLMVQANPDASP 54
EL RL++L+QQ++L +K+ +K+++L + NPD P
Sbjct: 53 ELRKQRLEELKQQQKLDRQKELEKKRKL---ETNPDIKP 88
>gi|45593130 guanine nucleotide binding protein-like 3 isoform 1
[Homo sapiens]
Length = 549
Score = 32.3 bits (72), Expect = 1.1
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 16 ELAAMRLQKLEQQRRLFEKKQRQKRQELLMVQANPDASP 54
EL RL++L+QQ++L +K+ +K+++L + NPD P
Sbjct: 65 ELRKQRLEELKQQQKLDRQKELEKKRKL---ETNPDIKP 100
>gi|163644316 hypothetical protein LOC23255 [Homo sapiens]
Length = 1586
Score = 32.0 bits (71), Expect = 1.4
Identities = 58/220 (26%), Positives = 85/220 (38%), Gaps = 54/220 (24%)
Query: 120 NLGLQSPFLSWLPDNSDAELEEVSVENGSVSPPPFKQSPRIRRKGWQAHQRPGTRAEGES 179
+LGL++P P +SDAE + E+ + P+ +R+G GES
Sbjct: 374 HLGLRAPS----PRDSDAESDAGKKESDGEE----SRLPQPKREG---------PVGGES 416
Query: 180 DSQDMGDAHKSPNMGPNPGMDGDCVYENLAFQKEEDLEKKREASESTGTNSSAAHNEE-- 237
DS++M + G C E L K RE SE T A E
Sbjct: 417 DSEEMFEKTSGFGSGKPSEASEPCPTELL---------KAREDSEYLVTLKHEAQRLERT 467
Query: 238 LSKALKGEGGTDSDHMRHEASLAIRSPCP-----GLEEDMEAYVLRPALPGTM------- 285
+ + + TD+D H+A L +P P G EE E P L GT+
Sbjct: 468 VERLI-----TDTDSFLHDAGLRGGAPLPGPGLQGEEEQGEGDQQEPQLLGTINAKMKAF 522
Query: 286 ---MQCYLTRDKHGVDKGLFPLYYL-----YLETSDSLQR 317
+Q +L + + GL PL +L +L T S+ R
Sbjct: 523 KKELQAFL-EQVNRIGDGLSPLPHLTESSSFLSTVTSVSR 561
>gi|29789008 Huntingtin interacting protein C isoform 2 [Homo
sapiens]
Length = 858
Score = 32.0 bits (71), Expect = 1.4
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 14/141 (9%)
Query: 132 PDNSDAELEEVSVENGSVSPPPFKQSPRIRRKGWQAHQRPGTRAEGESDSQDMGDAHKSP 191
P S++E EE+ PPP + P+ RR+ G+ DS + G A
Sbjct: 700 PSGSESEEEEL--------PPPSLRPPKRRRRN---PSESGSEPSSSLDSVESGGAALGG 748
Query: 192 NMGPNPGMDGDCVYENLAFQKEEDLEKKREASESTGTNSSAAHNEELSKAL-KGEGGTDS 250
P+ + G L K+ + K+ +S S E+ K + E D
Sbjct: 749 RGSPSSHLLG--ADHGLRKAKKPKKKTKKRRHKSNSPESETDPEEKAGKESDEKEQEQDK 806
Query: 251 DHMRHEASLAIRSPCPGLEED 271
D +A L RSP G++++
Sbjct: 807 DRELQQAELPNRSPGFGIKKE 827
>gi|72534686 Huntingtin interacting protein C isoform 1 [Homo
sapiens]
Length = 871
Score = 32.0 bits (71), Expect = 1.4
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 14/141 (9%)
Query: 132 PDNSDAELEEVSVENGSVSPPPFKQSPRIRRKGWQAHQRPGTRAEGESDSQDMGDAHKSP 191
P S++E EE+ PPP + P+ RR+ G+ DS + G A
Sbjct: 713 PSGSESEEEEL--------PPPSLRPPKRRRRN---PSESGSEPSSSLDSVESGGAALGG 761
Query: 192 NMGPNPGMDGDCVYENLAFQKEEDLEKKREASESTGTNSSAAHNEELSKAL-KGEGGTDS 250
P+ + G L K+ + K+ +S S E+ K + E D
Sbjct: 762 RGSPSSHLLG--ADHGLRKAKKPKKKTKKRRHKSNSPESETDPEEKAGKESDEKEQEQDK 819
Query: 251 DHMRHEASLAIRSPCPGLEED 271
D +A L RSP G++++
Sbjct: 820 DRELQQAELPNRSPGFGIKKE 840
>gi|51093836 hypothetical protein LOC126859 isoform 1 [Homo sapiens]
Length = 1012
Score = 31.6 bits (70), Expect = 1.8
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 339 PTHLSRDGDNFVGKVRSNVFSTKFTIFDNGVNPDREHLTRNTARIRQELGAVCYEPNVLG 398
P HL+R + G + V T+ D + P+ H+ +T G CY+
Sbjct: 147 PPHLARSLQSHDGVI---VPHKPKTLTDTLI-PEEFHIVSSTG----VSGLECYDDKYTT 198
Query: 399 YLGPRKMTVILPGTNSQNQRINVQPLNE-QESLLSR--YQRGDKQGLLLLHNKTPSWDKE 455
L + ++L + N+R+ V LN+ +++L R + + G +H KE
Sbjct: 199 LLTDSENRLLLFPSMKPNKRVEVAQLNDVMDTMLERAGVENQEYTGPTKMHKLLHILKKE 258
Query: 456 NGVYTLNFHGRVTRASV 472
+Y + FH + + SV
Sbjct: 259 QTIYNMIFHELIRQVSV 275
>gi|51093834 hypothetical protein LOC126859 isoform 2 [Homo sapiens]
Length = 938
Score = 31.6 bits (70), Expect = 1.8
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 339 PTHLSRDGDNFVGKVRSNVFSTKFTIFDNGVNPDREHLTRNTARIRQELGAVCYEPNVLG 398
P HL+R + G + V T+ D + P+ H+ +T G CY+
Sbjct: 147 PPHLARSLQSHDGVI---VPHKPKTLTDTLI-PEEFHIVSSTG----VSGLECYDDKYTT 198
Query: 399 YLGPRKMTVILPGTNSQNQRINVQPLNE-QESLLSR--YQRGDKQGLLLLHNKTPSWDKE 455
L + ++L + N+R+ V LN+ +++L R + + G +H KE
Sbjct: 199 LLTDSENRLLLFPSMKPNKRVEVAQLNDVMDTMLERAGVENQEYTGPTKMHKLLHILKKE 258
Query: 456 NGVYTLNFHGRVTRASV 472
+Y + FH + + SV
Sbjct: 259 QTIYNMIFHELIRQVSV 275
>gi|58743365 ring finger protein 157 [Homo sapiens]
Length = 679
Score = 31.6 bits (70), Expect = 1.8
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 184 MGDAHKSPNMGPNPGMDGDCV-------YENLAFQKEEDLEKKREASESTGTNSSAAHNE 236
+GD H S M P+ G DG + L+ + L+ K+ S+ST NSS H E
Sbjct: 389 LGDGHLS-GMLPSYGSDGHLPPVRTISPLDRLSDSSSQGLKLKKSLSKSTSQNSSVLHEE 447
Query: 237 E 237
E
Sbjct: 448 E 448
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 31.2 bits (69), Expect = 2.4
Identities = 25/131 (19%), Positives = 48/131 (36%)
Query: 140 EEVSVENGSVSPPPFKQSPRIRRKGWQAHQRPGTRAEGESDSQDMGDAHKSPNMGPNPGM 199
E S +G+ PP SP +K ++PG+ A + + + +
Sbjct: 531 EAASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRST 590
Query: 200 DGDCVYENLAFQKEEDLEKKREASESTGTNSSAAHNEELSKALKGEGGTDSDHMRHEASL 259
D + +E+ ++R AS T+SS++ E + +GG + S
Sbjct: 591 DRRRGGSRRSRSREKRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSR 650
Query: 260 AIRSPCPGLEE 270
+ G E+
Sbjct: 651 GEKRSGDGSEK 661
>gi|239752224 PREDICTED: hypothetical protein XP_002348163 [Homo
sapiens]
Length = 284
Score = 30.8 bits (68), Expect = 3.1
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 142 VSVENGSVSPPPFKQSPRIRRKGWQAHQRPGTRAEGESDSQDMGDA---HKSPNM--GPN 196
VS+ G+ PPP PR +G R TR G ++ + G + SP +
Sbjct: 137 VSLAVGAAPPPPRPNRPRCAARGRPTPTRGSTRQRGGAERRSPGHTVTLYSSPGTVDSES 196
Query: 197 PGMDG 201
PG DG
Sbjct: 197 PGRDG 201
>gi|239750077 PREDICTED: hypothetical protein [Homo sapiens]
Length = 903
Score = 30.8 bits (68), Expect = 3.1
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 26 EQQRRLFEKKQRQKRQELLMVQANPDASPWLWRSCLREERLLGDRGLGNPFLRKKVSEAH 85
EQ++RL + +QK E + P + W RS E R+L L +VS
Sbjct: 44 EQEQRLGGRGHKQKATEAQQTRQAPALALWPPRSASSELRVL--------LLALRVSARQ 95
Query: 86 LPSGIHSALGTVSCGGDGRGERGLPTPRTEAVFRNLGLQSP 126
+P +A G V+ G G +R +P P R+L Q+P
Sbjct: 96 VP----AAPGCVTVAGTGH-QRPVPQP-----LRHLAQQAP 126
>gi|118498364 dapper 1 isoform 2 [Homo sapiens]
Length = 799
Score = 30.8 bits (68), Expect = 3.1
Identities = 41/174 (23%), Positives = 57/174 (32%), Gaps = 31/174 (17%)
Query: 31 LFEKKQRQKRQELLMVQANPDASPWLWRSCLREERLLGDRGLGNPFLRKKVSEAHLPSGI 90
L +KK R N D + L R+ R G GN K +A LPSG
Sbjct: 308 LVQKKTHPVRTNKPRTSVNADPTKGLLRNGSVCVRAPGGVSQGNSVNLKNSKQACLPSG- 366
Query: 91 HSALGTVSCGGDGRGERGLPTPRTEAVFRNLGLQSPFLSWLPDNSDAELEEVSVE----- 145
G+P+ N G SP W ++ + E V
Sbjct: 367 -----------------GIPS-------LNNGTFSPPKQWSKESKAEQAESKRVPLPEGC 402
Query: 146 -NGSVSPPPFKQSPRIRRKGWQAHQRPGTRAEGESDSQDMGDAHKSPNMGPNPG 198
+G+ S K P+ + Q H R GES + + SP P+ G
Sbjct: 403 PSGAASDLQSKHLPKTAKPASQEHARCSAIGTGESPKESAQLSGASPKESPSRG 456
>gi|24158478 dapper 1 isoform 1 [Homo sapiens]
Length = 836
Score = 30.8 bits (68), Expect = 3.1
Identities = 41/174 (23%), Positives = 57/174 (32%), Gaps = 31/174 (17%)
Query: 31 LFEKKQRQKRQELLMVQANPDASPWLWRSCLREERLLGDRGLGNPFLRKKVSEAHLPSGI 90
L +KK R N D + L R+ R G GN K +A LPSG
Sbjct: 345 LVQKKTHPVRTNKPRTSVNADPTKGLLRNGSVCVRAPGGVSQGNSVNLKNSKQACLPSG- 403
Query: 91 HSALGTVSCGGDGRGERGLPTPRTEAVFRNLGLQSPFLSWLPDNSDAELEEVSVE----- 145
G+P+ N G SP W ++ + E V
Sbjct: 404 -----------------GIPS-------LNNGTFSPPKQWSKESKAEQAESKRVPLPEGC 439
Query: 146 -NGSVSPPPFKQSPRIRRKGWQAHQRPGTRAEGESDSQDMGDAHKSPNMGPNPG 198
+G+ S K P+ + Q H R GES + + SP P+ G
Sbjct: 440 PSGAASDLQSKHLPKTAKPASQEHARCSAIGTGESPKESAQLSGASPKESPSRG 493
>gi|215422383 proline rich Gla (G-carboxyglutamic acid) 1 [Homo
sapiens]
Length = 218
Score = 30.8 bits (68), Expect = 3.1
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 17/82 (20%)
Query: 72 LGNPFLRKKVSEAHLPSGIHSALGTVSCGGDGRGERGLPTPRTEAVFRNLGLQSPFLSWL 131
L N R+ V+E H+P H + T P P + VF + GL FL ++
Sbjct: 106 LRNKTRRQTVTEGHIPFPQHLNIIT-------------PPPPPDEVFDSSGLSPGFLGYV 152
Query: 132 PDNSDAELEEVSVENGSVSPPP 153
SD+ VS + PPP
Sbjct: 153 VGRSDS----VSTRLSNCDPPP 170
>gi|4506135 proline rich Gla (G-carboxyglutamic acid) 1 [Homo
sapiens]
Length = 218
Score = 30.8 bits (68), Expect = 3.1
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 17/82 (20%)
Query: 72 LGNPFLRKKVSEAHLPSGIHSALGTVSCGGDGRGERGLPTPRTEAVFRNLGLQSPFLSWL 131
L N R+ V+E H+P H + T P P + VF + GL FL ++
Sbjct: 106 LRNKTRRQTVTEGHIPFPQHLNIIT-------------PPPPPDEVFDSSGLSPGFLGYV 152
Query: 132 PDNSDAELEEVSVENGSVSPPP 153
SD+ VS + PPP
Sbjct: 153 VGRSDS----VSTRLSNCDPPP 170
>gi|223646113 Sp9 transcription factor homolog [Homo sapiens]
Length = 484
Score = 30.4 bits (67), Expect = 4.1
Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 19/134 (14%)
Query: 100 GGDGRGERGLPTPRTEAVFRNLGLQSPFLSWLPDNSDAELEEVSVENGSVSPPPFKQSPR 159
GG + T + ++ +G+ P+ SW + L V NG+ S
Sbjct: 128 GGQSAFISKVHTTAADGLYPRVGMAHPYESWYKSGFHSTLAAGEVTNGAAS--------- 178
Query: 160 IRRKGWQAHQRPGTRAEGESDSQDMGDAHKSPNMGPNPGMDGDCVYENLAFQKEEDLEKK 219
W H PG+ E ++ + + + S G ++ L +
Sbjct: 179 ---SWWDVHSSPGSWLEVQNPAGGLQSSLHS-------GAPQASLHSQLGTYNPDFSSLT 228
Query: 220 REASESTGTNSSAA 233
A STG SSAA
Sbjct: 229 HSAFSSTGLGSSAA 242
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 30.4 bits (67), Expect = 4.1
Identities = 42/188 (22%), Positives = 61/188 (32%), Gaps = 27/188 (14%)
Query: 91 HSALGTVSCGGDGRGERGLPTPRTEAVFRNLGLQSPF-----------LSWLPDNSDAEL 139
HS+ R RG P TE++ R L Q F S+ NSD+
Sbjct: 129 HSSWSAGENDSYSRNVRGSLKPGTESISRRLSFQRDFSGQHNSYSGQSSSYGEQNSDSHQ 188
Query: 140 EEVSVENGSVSPPPFKQSPRIRRKGWQAHQRPGTRAEGESDSQDMGDAHKSPNMGPNPGM 199
+ GS S QSP + G + Q G Q G + + G + G
Sbjct: 189 SSGRGQCGSGS----GQSPNYGQHGSGSGQSSSNDTHGSGSGQSSGFSQHKSSSGQSSGY 244
Query: 200 D-------GDCVYENLAFQKEEDLEKKREASESTGTNSSAAH----NEELSKALKGEGGT 248
Y + + +R S S ++S H + L +G G
Sbjct: 245 SQHGSGSGHSSGYGQHGSRSGQSSRGERHRSSSGSSSSYGQHGSGSRQSLGHGRQGSGSR 304
Query: 249 DS-DHMRH 255
S H+RH
Sbjct: 305 QSPSHVRH 312
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,576,356
Number of Sequences: 37866
Number of extensions: 1136730
Number of successful extensions: 4610
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 4530
Number of HSP's gapped (non-prelim): 113
length of query: 520
length of database: 18,247,518
effective HSP length: 107
effective length of query: 413
effective length of database: 14,195,856
effective search space: 5862888528
effective search space used: 5862888528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.