Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 23503229
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23503229 WW domain binding protein 1 [Homo sapiens]
(269 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23503229 WW domain binding protein 1 [Homo sapiens] 583 e-167
gi|144953882 hypothetical protein LOC54838 isoform 1 [Homo sapiens] 174 6e-44
gi|144953880 hypothetical protein LOC54838 isoform 2 [Homo sapiens] 172 2e-43
gi|21361937 proline rich 7 (synaptic) [Homo sapiens] 42 6e-04
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [... 40 0.002
gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [... 40 0.002
gi|4557317 annexin A11 [Homo sapiens] 39 0.006
gi|22165433 annexin A11 [Homo sapiens] 39 0.006
gi|22165431 annexin A11 [Homo sapiens] 39 0.006
gi|110832843 TBP-associated factor 4 [Homo sapiens] 38 0.011
gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens] 37 0.014
gi|178557734 microtubule-associated protein tau isoform 6 [Homo ... 37 0.024
gi|169162161 PREDICTED: similar to EGFR-coamplified and overexpr... 36 0.040
gi|113411383 PREDICTED: similar to EGFR-coamplified and overexpr... 36 0.040
gi|148612825 Rap GTPase interactor [Homo sapiens] 36 0.040
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 35 0.053
gi|106507239 EGFR-coamplified and overexpressed protein [Homo sa... 35 0.069
gi|114155127 regulator of G-protein signalling 3 isoform 6 [Homo... 35 0.069
gi|10864075 regulator of G-protein signalling 3 isoform 2 [Homo ... 35 0.069
gi|62865651 regulator of G-protein signalling 3 isoform 1 [Homo ... 35 0.069
gi|39812378 RAN binding protein 9 [Homo sapiens] 35 0.069
gi|122937492 SET domain containing 5 [Homo sapiens] 35 0.069
gi|16306552 semaphorin Y [Homo sapiens] 35 0.090
gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo s... 35 0.090
gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo s... 35 0.090
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 34 0.12
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 34 0.12
gi|52630419 sterol regulatory element binding transcription fact... 34 0.15
gi|22547195 sterol regulatory element binding transcription fact... 34 0.15
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 34 0.15
>gi|23503229 WW domain binding protein 1 [Homo sapiens]
Length = 269
Score = 583 bits (1502), Expect = e-167
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MARASSGNGSEEAWGALRAPQQQLRELCPGVNNQPYLCESGHCCGETGCCTYYYELWWFW 60
MARASSGNGSEEAWGALRAPQQQLRELCPGVNNQPYLCESGHCCGETGCCTYYYELWWFW
Sbjct: 1 MARASSGNGSEEAWGALRAPQQQLRELCPGVNNQPYLCESGHCCGETGCCTYYYELWWFW 60
Query: 61 LLWTVLILFSCCCAFRHRRAKLRLQQQQRQREINLLAYHGACHGAGPFPTGSLLDLRFLS 120
LLWTVLILFSCCCAFRHRRAKLRLQQQQRQREINLLAYHGACHGAGPFPTGSLLDLRFLS
Sbjct: 61 LLWTVLILFSCCCAFRHRRAKLRLQQQQRQREINLLAYHGACHGAGPFPTGSLLDLRFLS 120
Query: 121 TFKPPAYEDVVHRPGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQ 180
TFKPPAYEDVVHRPGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQ
Sbjct: 121 TFKPPAYEDVVHRPGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQ 180
Query: 181 SAPPHQEGEPGAGVTPASTPPSCRYRRLTGDSGIELCPCPASGEGEPVKEVRVSATLPDL 240
SAPPHQEGEPGAGVTPASTPPSCRYRRLTGDSGIELCPCPASGEGEPVKEVRVSATLPDL
Sbjct: 181 SAPPHQEGEPGAGVTPASTPPSCRYRRLTGDSGIELCPCPASGEGEPVKEVRVSATLPDL 240
Query: 241 EDYSPCALPPESVPQIFPMGLSSSEGDIP 269
EDYSPCALPPESVPQIFPMGLSSSEGDIP
Sbjct: 241 EDYSPCALPPESVPQIFPMGLSSSEGDIP 269
>gi|144953882 hypothetical protein LOC54838 isoform 1 [Homo sapiens]
Length = 363
Score = 174 bits (442), Expect = 6e-44
Identities = 101/270 (37%), Positives = 125/270 (46%), Gaps = 62/270 (22%)
Query: 18 RAPQQQLRELCPGVNNQPYLCESGHCCGETGCCTYYYELWWFWLLWTVLILFSCCCAFRH 77
RA Q +E C G NNQ Y+C++GHCCG++ CC YYYELWWFWL+WT++I+ SCCC H
Sbjct: 25 RAEPPQDKEACVGTNNQSYICDTGHCCGQSQCCNYYYELWWFWLVWTIIIILSCCCVCHH 84
Query: 78 RRAKLRLQQQQRQREINLLAYHGACHGAGPFPTGSLLDLRFLSTFKPPAYEDVVHRPGTP 137
RRAK RLQ QQRQ EINL+AY A H P RFL + P YE+VV+RP TP
Sbjct: 85 RRAKHRLQAQQRQHEINLIAYREA-HNYSALP----FYFRFLPNYLLPPYEEVVNRPPTP 139
Query: 138 PPPYTV-------------------------------APGRPLTASSEQTCCSSS----- 161
PPPY+ A PL+ S + S
Sbjct: 140 PPPYSAFQLQQQQLLPPQCGPAGGSPPGIDPTRGSQGAQSSPLSEPSRSSTRPPSIADPD 199
Query: 162 -SSCPAHFEGTNVEGVSSHQSAPPHQEGEPGA--------------------GVTPASTP 200
S P T G+ S E +PGA G +
Sbjct: 200 PSDLPVDRAATKAPGMEPSGSVAGLGELDPGAFLDKDAECREELLKDDSSEHGAPDSKEK 259
Query: 201 PSCRYRRLTGDSGIELCPCPASGEGEPVKE 230
R+RR TGDSGIE+C C + +KE
Sbjct: 260 TPGRHRRFTGDSGIEVCVCNRGHHDDDLKE 289
>gi|144953880 hypothetical protein LOC54838 isoform 2 [Homo sapiens]
Length = 342
Score = 172 bits (437), Expect = 2e-43
Identities = 99/266 (37%), Positives = 124/266 (46%), Gaps = 62/266 (23%)
Query: 22 QQLRELCPGVNNQPYLCESGHCCGETGCCTYYYELWWFWLLWTVLILFSCCCAFRHRRAK 81
+Q +E C G NNQ Y+C++GHCCG++ CC YYYELWWFWL+WT++I+ SCCC HRRAK
Sbjct: 8 RQDKEACVGTNNQSYICDTGHCCGQSQCCNYYYELWWFWLVWTIIIILSCCCVCHHRRAK 67
Query: 82 LRLQQQQRQREINLLAYHGACHGAGPFPTGSLLDLRFLSTFKPPAYEDVVHRPGTPPPPY 141
RLQ QQRQ EINL+AY A H P RFL + P YE+VV+RP TPPPPY
Sbjct: 68 HRLQAQQRQHEINLIAYREA-HNYSALP----FYFRFLPNYLLPPYEEVVNRPPTPPPPY 122
Query: 142 TV-------------------------------APGRPLTASSEQTCCSSS------SSC 164
+ A PL+ S + S S
Sbjct: 123 SAFQLQQQQLLPPQCGPAGGSPPGIDPTRGSQGAQSSPLSEPSRSSTRPPSIADPDPSDL 182
Query: 165 PAHFEGTNVEGVSSHQSAPPHQEGEPGA--------------------GVTPASTPPSCR 204
P T G+ S E +PGA G + R
Sbjct: 183 PVDRAATKAPGMEPSGSVAGLGELDPGAFLDKDAECREELLKDDSSEHGAPDSKEKTPGR 242
Query: 205 YRRLTGDSGIELCPCPASGEGEPVKE 230
+RR TGDSGIE+C C + +KE
Sbjct: 243 HRRFTGDSGIEVCVCNRGHHDDDLKE 268
>gi|21361937 proline rich 7 (synaptic) [Homo sapiens]
Length = 274
Score = 42.0 bits (97), Expect = 6e-04
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 59 FWLLWTVLILFSCCCAFRHRRAKLRLQQQQRQREINLLA 97
FWL+W +++L C C+F RR K R Q++R RE NL A
Sbjct: 17 FWLIWGLIVLLCCFCSFLRRRLKRR--QEERLREQNLRA 53
>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
[Homo sapiens]
Length = 650
Score = 40.0 bits (92), Expect = 0.002
Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 10/105 (9%)
Query: 124 PPAYEDVVHRPGTPPPPYT---VAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQ 180
PP +P PPPP + PG PL S+ T V SS
Sbjct: 386 PPPPPPASQQPPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPPLA-------VTVPSSLP 438
Query: 181 SAPPHQEGEPGAGVTPASTPPSCRYRRLTGDSGIELCPCPASGEG 225
+PP G+P G+ AS P +YR G + P S +G
Sbjct: 439 QSPPENPGQPSMGIDIASAPALQQYRTSAGSPANQSPTSPVSNQG 483
>gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1
[Homo sapiens]
Length = 634
Score = 40.0 bits (92), Expect = 0.002
Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 10/105 (9%)
Query: 124 PPAYEDVVHRPGTPPPPYT---VAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQ 180
PP +P PPPP + PG PL S+ T V SS
Sbjct: 370 PPPPPPASQQPPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPPLA-------VTVPSSLP 422
Query: 181 SAPPHQEGEPGAGVTPASTPPSCRYRRLTGDSGIELCPCPASGEG 225
+PP G+P G+ AS P +YR G + P S +G
Sbjct: 423 QSPPENPGQPSMGIDIASAPALQQYRTSAGSPANQSPTSPVSNQG 467
>gi|4557317 annexin A11 [Homo sapiens]
Length = 505
Score = 38.5 bits (88), Expect = 0.006
Identities = 20/81 (24%), Positives = 30/81 (37%)
Query: 122 FKPPAYEDVVHRPGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQS 181
+ PP P PP P PG+P+ +Q + P + G + Q
Sbjct: 106 YPPPGGNPPSRMPSYPPYPGAPVPGQPMPPPGQQPPGAYPGQPPVTYPGQPPVPLPGQQQ 165
Query: 182 APPHQEGEPGAGVTPASTPPS 202
P G PG+G + PP+
Sbjct: 166 PVPSYPGYPGSGTVTPAVPPT 186
>gi|22165433 annexin A11 [Homo sapiens]
Length = 505
Score = 38.5 bits (88), Expect = 0.006
Identities = 20/81 (24%), Positives = 30/81 (37%)
Query: 122 FKPPAYEDVVHRPGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQS 181
+ PP P PP P PG+P+ +Q + P + G + Q
Sbjct: 106 YPPPGGNPPSRMPSYPPYPGAPVPGQPMPPPGQQPPGAYPGQPPVTYPGQPPVPLPGQQQ 165
Query: 182 APPHQEGEPGAGVTPASTPPS 202
P G PG+G + PP+
Sbjct: 166 PVPSYPGYPGSGTVTPAVPPT 186
>gi|22165431 annexin A11 [Homo sapiens]
Length = 505
Score = 38.5 bits (88), Expect = 0.006
Identities = 20/81 (24%), Positives = 30/81 (37%)
Query: 122 FKPPAYEDVVHRPGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQS 181
+ PP P PP P PG+P+ +Q + P + G + Q
Sbjct: 106 YPPPGGNPPSRMPSYPPYPGAPVPGQPMPPPGQQPPGAYPGQPPVTYPGQPPVPLPGQQQ 165
Query: 182 APPHQEGEPGAGVTPASTPPS 202
P G PG+G + PP+
Sbjct: 166 PVPSYPGYPGSGTVTPAVPPT 186
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 37.7 bits (86), Expect = 0.011
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 17/146 (11%)
Query: 124 PPAYEDVVHRPGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQSAP 183
PPA + PG P P T AP P A+++ + ++ PA G P
Sbjct: 274 PPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAG-----------GP 322
Query: 184 PHQEGEPGAGVTPASTPPSCRY---RRLTGDSGIELCPCPASGEGEPVKEVRVSATLPDL 240
G+PG G A+ P + +R+ + ASG + + T+
Sbjct: 323 AGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGA 382
Query: 241 EDYSPCALPPES--VPQIFPMGLSSS 264
SP A+PP + P P G + +
Sbjct: 383 LP-SPAAVPPPAPGTPTGLPKGAAGA 407
Score = 33.9 bits (76), Expect = 0.15
Identities = 34/133 (25%), Positives = 45/133 (33%), Gaps = 33/133 (24%)
Query: 118 FLSTFKPPAYEDVVHRPGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVS 177
F+ PPA P P PP AP P A ++ + P
Sbjct: 243 FVGAAAPPA-------PAAPSPPAAPAPAAPAAAPPPPPPAPATLARP------------ 283
Query: 178 SHQSAPPHQEGEPGAGVTPASTPPSCRYRRLTGDSGIELCPCPASG-----EGEPVKEVR 232
P H G P A PA PP+ G +G P PA+G G+P
Sbjct: 284 -----PGHPAGPPTA--APAVPPPAAAQN--GGSAGAAPAPAPAAGGPAGVSGQPGPGAA 334
Query: 233 VSATLPDLEDYSP 245
+A P ++ SP
Sbjct: 335 AAAPAPGVKAESP 347
>gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]
Length = 1910
Score = 37.4 bits (85), Expect = 0.014
Identities = 23/93 (24%), Positives = 37/93 (39%)
Query: 126 AYEDVVHRPGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQSAPPH 185
A + + PG PP P + PG PL S + C + C A + N+ + H +
Sbjct: 1496 AEKSSLSHPGIPPSPPSCGPGSPLMPSRDVHCTTDGRQCQASAQLDNLPASAWHSTDSAS 1555
Query: 186 QEGEPGAGVTPASTPPSCRYRRLTGDSGIELCP 218
+ AS P R +++ S +E P
Sbjct: 1556 PQTYEVELEMQASGLPKLRIKKIDPSSSLEAEP 1588
>gi|178557734 microtubule-associated protein tau isoform 6 [Homo
sapiens]
Length = 776
Score = 36.6 bits (83), Expect = 0.024
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 125 PAYEDVVHRPGTP---PPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTN--VEGVSSH 179
P D + +P +P P P P P SS + SS + +G + + +
Sbjct: 417 PGSSDPLIQPSSPAVCPEP----PSSPKHVSSVTSRTGSSGAKEMKLKGADGKTKIATPR 472
Query: 180 QSAPPHQEGEPGAGVTPASTPPSCRYRRLTGDSGIELCPCPA---SGEGEPVK 229
+APP Q+G+ A PA TPP+ + + ++ P PA S GEP K
Sbjct: 473 GAAPPGQKGQANATRIPAKTPPAPKTPPSSATKQVQRRPPPAGPRSERGEPPK 525
>gi|169162161 PREDICTED: similar to EGFR-coamplified and
overexpressed protein [Homo sapiens]
Length = 172
Score = 35.8 bits (81), Expect = 0.040
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 36 YLCESGHCCGETGCCTYYYELWWFWLLWTVL---ILFSCCCAFRHRR 79
Y+C S C + CC + W W W +L +LF C F RR
Sbjct: 37 YICRSYEDCCGSRCCVRALSIQWLWYFWFLLMMGVLFCCGAGFFIRR 83
>gi|113411383 PREDICTED: similar to EGFR-coamplified and
overexpressed protein [Homo sapiens]
Length = 172
Score = 35.8 bits (81), Expect = 0.040
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 36 YLCESGHCCGETGCCTYYYELWWFWLLWTVL---ILFSCCCAFRHRR 79
Y+C S C + CC + W W W +L +LF C F RR
Sbjct: 37 YICRSYEDCCGSRCCVRALSIQWLWYFWFLLMMGVLFCCGAGFFIRR 83
>gi|148612825 Rap GTPase interactor [Homo sapiens]
Length = 1075
Score = 35.8 bits (81), Expect = 0.040
Identities = 34/128 (26%), Positives = 45/128 (35%), Gaps = 12/128 (9%)
Query: 119 LSTFKPPAY--------EDVVHRPGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEG 170
+ST++P A EDV+ PPP V P E C S +
Sbjct: 747 MSTWEPGAQDSPEAFRSEDVLESYENPPP--IVLPSDGFQVDLEANCLDDSIYQHLLYVR 804
Query: 171 TNVEGVSSHQSAPPHQEGEPGAGVTPASTPPSCRYRRLTGDSGIELCPCPASGEGEPVKE 230
+ G+ S S P G PG+G + P + L G CP G +E
Sbjct: 805 HFLWGLRSRAS--PGSPGRPGSGASQPVCPEGMHHVVLDGHLEAPSCPLAPRDPGPAARE 862
Query: 231 VRVSATLP 238
V TLP
Sbjct: 863 VAPERTLP 870
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 35.4 bits (80), Expect = 0.053
Identities = 48/166 (28%), Positives = 61/166 (36%), Gaps = 22/166 (13%)
Query: 105 AGPFPTGSLLDLRFLSTFKPPAYEDVVHRPGTPPPPYTVAPGRPLTASS----------- 153
AGP + L+ S+ A + + PG+P PP AP P ASS
Sbjct: 803 AGPSGSPELVSSPAASSSSATALQ--IQPPGSPDPP--PAPPAPAPASSAPGHVAKLPQK 858
Query: 154 EQTCCSSSSSCPAHFEGTNVEGVSSHQSAPPHQEGEPGAGVTPA---STPPSCRYRRLTG 210
E CS P G + S Q G PG TPA S P R L+G
Sbjct: 859 EPVGCSKGGGPPREDVGAPLVTPSLLQMVRLRSVGAPGGAPTPALGPSAPQKPLRRALSG 918
Query: 211 DSGIELCPCPASGEGEPVKEVRVS-ATLPDLEDYSPCALPPESVPQ 255
+ P P+SG V+ S A L P PPE+ P+
Sbjct: 919 RA--SPVPAPSSGLHAAVRLKACSLAASEGLSSAQPNG-PPEAEPR 961
>gi|106507239 EGFR-coamplified and overexpressed protein [Homo
sapiens]
Length = 172
Score = 35.0 bits (79), Expect = 0.069
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 36 YLCESGHCCGETGCCTY---YYELWWFWLLWTVLILFSCCCAFRHRR 79
Y+C S C + CC LW+FW L + +LF C F RR
Sbjct: 37 YICRSYEDCCGSRCCVRALSIQRLWYFWFLLMMGVLFCCGAGFFIRR 83
>gi|114155127 regulator of G-protein signalling 3 isoform 6 [Homo
sapiens]
Length = 1198
Score = 35.0 bits (79), Expect = 0.069
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 22/126 (17%)
Query: 137 PPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQSAPPHQEGEPGAGVTP 196
P P + PG+ L + + S P+ E + + ++ + +PP + P V P
Sbjct: 710 PSPGQELPPGQDLPPNKDSP--SGQEPAPSQ-EPLSSKDSATSEGSPPGPDAPPSKDVPP 766
Query: 197 ASTPPSCRYRRLTGDSGIELCPC---PASGEGEPVKEVRVSATLPDLE-----DYSPCA- 247
PP + +L PC PA E P ++ ++ LP ++ D PC
Sbjct: 767 CQEPPPAQ----------DLSPCQDLPAGQEPLPHQDPLLTKDLPAIQESPTRDLPPCQD 816
Query: 248 LPPESV 253
LPP V
Sbjct: 817 LPPSQV 822
>gi|10864075 regulator of G-protein signalling 3 isoform 2 [Homo
sapiens]
Length = 519
Score = 35.0 bits (79), Expect = 0.069
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 22/126 (17%)
Query: 137 PPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQSAPPHQEGEPGAGVTP 196
P P + PG+ L + + S P+ E + + ++ + +PP + P V P
Sbjct: 31 PSPGQELPPGQDLPPNKDSP--SGQEPAPSQ-EPLSSKDSATSEGSPPGPDAPPSKDVPP 87
Query: 197 ASTPPSCRYRRLTGDSGIELCPC---PASGEGEPVKEVRVSATLPDLE-----DYSPCA- 247
PP + +L PC PA E P ++ ++ LP ++ D PC
Sbjct: 88 CQEPPPAQ----------DLSPCQDLPAGQEPLPHQDPLLTKDLPAIQESPTRDLPPCQD 137
Query: 248 LPPESV 253
LPP V
Sbjct: 138 LPPSQV 143
>gi|62865651 regulator of G-protein signalling 3 isoform 1 [Homo
sapiens]
Length = 917
Score = 35.0 bits (79), Expect = 0.069
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 22/126 (17%)
Query: 137 PPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQSAPPHQEGEPGAGVTP 196
P P + PG+ L + + S P+ E + + ++ + +PP + P V P
Sbjct: 429 PSPGQELPPGQDLPPNKDSP--SGQEPAPSQ-EPLSSKDSATSEGSPPGPDAPPSKDVPP 485
Query: 197 ASTPPSCRYRRLTGDSGIELCPC---PASGEGEPVKEVRVSATLPDLE-----DYSPCA- 247
PP + +L PC PA E P ++ ++ LP ++ D PC
Sbjct: 486 CQEPPPAQ----------DLSPCQDLPAGQEPLPHQDPLLTKDLPAIQESPTRDLPPCQD 535
Query: 248 LPPESV 253
LPP V
Sbjct: 536 LPPSQV 541
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 35.0 bits (79), Expect = 0.069
Identities = 31/133 (23%), Positives = 45/133 (33%), Gaps = 26/133 (19%)
Query: 124 PPAYEDVVHRPGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQSA- 182
PP + + +PPPP +AP + + + SS + G EG+ + +A
Sbjct: 8 PPPQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPGGGAGGEGLGAAAAAL 67
Query: 183 -----------------PPHQEGEPGAGVTPASTPPSCRYRRLTGDSGIELCPCPASGEG 225
PP P + PAS PP+ G+ P PA G
Sbjct: 68 LLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPPA--------PPGLAAGPGPAGGAP 119
Query: 226 EPVKEVRVSATLP 238
P SA P
Sbjct: 120 TPALVAGSSAAAP 132
>gi|122937492 SET domain containing 5 [Homo sapiens]
Length = 1442
Score = 35.0 bits (79), Expect = 0.069
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 14/91 (15%)
Query: 126 AYEDVVHRPGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTN----VEGVSSHQS 181
+Y RPG PP SSE + S+S S PAH T+ G + S
Sbjct: 1273 SYRTTALRPGNPPSH----------GSSESSLSSTSYSSPAHPVSTDSLAPFTGTPGYFS 1322
Query: 182 APPHQEGEPGAGVTPASTPPSCRYRRLTGDS 212
+ PH G+ + S P S L G S
Sbjct: 1323 SQPHSGNSTGSNLPRRSCPSSAASPTLQGPS 1353
>gi|16306552 semaphorin Y [Homo sapiens]
Length = 930
Score = 34.7 bits (78), Expect = 0.090
Identities = 47/191 (24%), Positives = 64/191 (33%), Gaps = 11/191 (5%)
Query: 67 ILFSCCCAFRHRRAKLRLQQQQRQREINLLAYHGACHGAGPFPTGSLLDLRFLSTFKPPA 126
+L SC C HRR ++ R ++L + HG GP P D + T P
Sbjct: 623 LLVSCACRRAHRRRGKDIETPGLPRPLSLRSL-ARLHGGGPEPPPPSKDGDAVQT--PQL 679
Query: 127 YEDVVHRP-GTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQSAPPH 185
Y + P G PPP P T ++ + N +S H
Sbjct: 680 YTTFLPPPEGVPPPELACLPTPESTPELPVKHLRAAGDPWEWNQNRNNAKEGPGRSRGGH 739
Query: 186 QEGEPGAGVTPASTPPSCRYRRLTGDSGIELCPCPASGEGEPVKEVRVSATLPDLEDYSP 245
G P V PP C + + + EL G P K A L +
Sbjct: 740 AAGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRY-LHGPQPPRKGAEPPAPL------TS 792
Query: 246 CALPPESVPQI 256
ALPPE P +
Sbjct: 793 RALPPEPAPAL 803
>gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo
sapiens]
Length = 920
Score = 34.7 bits (78), Expect = 0.090
Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 134 PGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPA-HFEGTNVEGV----SSHQSAPPHQEG 188
PG PP Y L S + T C S PA H + T+ G +S+ AP
Sbjct: 776 PGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAP----- 830
Query: 189 EPGAGVTPASTPPSCRY---RRLTGDSGIELCPCPASG-EGEPVKEVRVSATLPDLEDYS 244
PG + ++ PP+ R + G +G EL PA+G G P A P L+
Sbjct: 831 -PGPQLHHSNPPPASRQSLGQASLGPTG-ELAFSPATGVMGPPSMSGAGEAPEPALDLLP 888
Query: 245 PCALPPESVPQIFPMGLSSSEGD 267
P E + + P L ++ D
Sbjct: 889 ELTNPDELLSYLGPPDLPTNNND 911
>gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo
sapiens]
Length = 894
Score = 34.7 bits (78), Expect = 0.090
Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 134 PGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPA-HFEGTNVEGV----SSHQSAPPHQEG 188
PG PP Y L S + T C S PA H + T+ G +S+ AP
Sbjct: 750 PGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAP----- 804
Query: 189 EPGAGVTPASTPPSCRY---RRLTGDSGIELCPCPASG-EGEPVKEVRVSATLPDLEDYS 244
PG + ++ PP+ R + G +G EL PA+G G P A P L+
Sbjct: 805 -PGPQLHHSNPPPASRQSLGQASLGPTG-ELAFSPATGVMGPPSMSGAGEAPEPALDLLP 862
Query: 245 PCALPPESVPQIFPMGLSSSEGD 267
P E + + P L ++ D
Sbjct: 863 ELTNPDELLSYLGPPDLPTNNND 885
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 34.3 bits (77), Expect = 0.12
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 134 PGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQ------SAPPHQE 187
P PPPP + +P R +S + +S+ P T+ VSS+ S PP+ +
Sbjct: 608 PQQPPPPPSYSPARNPPGASTY---NKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQ 664
Query: 188 GEPGAGVT----PASTPPSCRYRRLTGDSGIELCPCP 220
G G T P PP+ Y G + P P
Sbjct: 665 GGYSQGYTAPPPPPPPPPAYNYGSYGGYNPAPYTPPP 701
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 34.3 bits (77), Expect = 0.12
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 134 PGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQ------SAPPHQE 187
P PPPP + +P R +S + +S+ P T+ VSS+ S PP+ +
Sbjct: 708 PQQPPPPPSYSPARNPPGASTY---NKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQ 764
Query: 188 GEPGAGVT----PASTPPSCRYRRLTGDSGIELCPCP 220
G G T P PP+ Y G + P P
Sbjct: 765 GGYSQGYTAPPPPPPPPPAYNYGSYGGYNPAPYTPPP 801
>gi|52630419 sterol regulatory element binding transcription factor
1 isoform a [Homo sapiens]
Length = 1177
Score = 33.9 bits (76), Expect = 0.15
Identities = 33/125 (26%), Positives = 44/125 (35%), Gaps = 18/125 (14%)
Query: 134 PGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQSAPPHQEGEPGAG 193
PG PPY + +S T S S P +++E S A P P
Sbjct: 74 PGLFDPPYAGSGAGGTDPASPDTSSPGSLSPPPATLSSSLEAFLSGPQAAPSPLSPPQPA 133
Query: 194 VTPASTPPSCRYRRLTGDSGIELCPCPASGEGEPVKEVRVSATLPDLEDYSPCALPPESV 253
TP PS PA G +KE V ++ L+ +P LP +
Sbjct: 134 PTPLKMYPS----------------MPAFSPGPGIKEESVPLSI--LQTPTPQPLPGALL 175
Query: 254 PQIFP 258
PQ FP
Sbjct: 176 PQSFP 180
>gi|22547195 sterol regulatory element binding transcription factor
1 isoform b [Homo sapiens]
Length = 1147
Score = 33.9 bits (76), Expect = 0.15
Identities = 33/125 (26%), Positives = 44/125 (35%), Gaps = 18/125 (14%)
Query: 134 PGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQSAPPHQEGEPGAG 193
PG PPY + +S T S S P +++E S A P P
Sbjct: 44 PGLFDPPYAGSGAGGTDPASPDTSSPGSLSPPPATLSSSLEAFLSGPQAAPSPLSPPQPA 103
Query: 194 VTPASTPPSCRYRRLTGDSGIELCPCPASGEGEPVKEVRVSATLPDLEDYSPCALPPESV 253
TP PS PA G +KE V ++ L+ +P LP +
Sbjct: 104 PTPLKMYPS----------------MPAFSPGPGIKEESVPLSI--LQTPTPQPLPGALL 145
Query: 254 PQIFP 258
PQ FP
Sbjct: 146 PQSFP 150
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 33.9 bits (76), Expect = 0.15
Identities = 35/148 (23%), Positives = 54/148 (36%), Gaps = 13/148 (8%)
Query: 125 PAYEDVVHRPGTP-PPPYTVAPGRPLTASSEQ---TCCSSSSSCPAHFEGTNVEGVSSHQ 180
PA + + PG P PPP + P P T+SS++ T + + +H S+H+
Sbjct: 421 PAEKPIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHK 480
Query: 181 SAP---PHQEGEPGAGVTPASTPPSCRYRRLTGDSGIELCPC---PAS---GEGEPVKEV 231
P P G T ++ PP+ +G S P P S G +P+
Sbjct: 481 PPPFTALSSSPAPTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSE 540
Query: 232 RVSATLPDLEDYSPCALPPESVPQIFPM 259
P P L P + P+
Sbjct: 541 ASKKAGPKSSPRKPVPLRPGKAARDVPL 568
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,399,974
Number of Sequences: 37866
Number of extensions: 842894
Number of successful extensions: 4700
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 196
Number of HSP's that attempted gapping in prelim test: 4323
Number of HSP's gapped (non-prelim): 531
length of query: 269
length of database: 18,247,518
effective HSP length: 101
effective length of query: 168
effective length of database: 14,423,052
effective search space: 2423072736
effective search space used: 2423072736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.