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Search of human proteins with 23346427
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23346427 hypothetical protein LOC84221 isoform 2 [Homo
sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|218749820 hypothetical protein LOC84221 isoform 1 [Homo sapiens] 370 e-103
gi|23346427 hypothetical protein LOC84221 isoform 2 [Homo sapiens] 370 e-103
gi|197276668 spermatogenesis and centriole associated 1 isoform ... 156 1e-38
gi|239754974 PREDICTED: similar to spermatogenesis and centriole... 99 2e-21
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr... 31 0.70
gi|59850762 uveal autoantigen with coiled-coil domains and ankyr... 31 0.70
gi|40068475 twinfilin 1 [Homo sapiens] 31 0.70
gi|93204861 protein phosphatase 1, regulatory (inhibitor) subuni... 30 0.92
gi|4502079 adenosine monophosphate deaminase 3 isoform 1A [Homo ... 28 4.6
gi|70906428 adenosine monophosphate deaminase 3 isoform 1C [Homo... 28 4.6
gi|70906426 adenosine monophosphate deaminase 3 isoform 1B [Homo... 28 4.6
gi|33188443 microfilament and actin filament cross-linker protei... 28 5.9
gi|33188445 microfilament and actin filament cross-linker protei... 28 5.9
gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo sapi... 27 7.8
gi|238624193 hypothetical protein LOC221545 isoform 2 [Homo sapi... 27 7.8
gi|158262031 hypothetical protein LOC221545 isoform 1 [Homo sapi... 27 7.8
>gi|218749820 hypothetical protein LOC84221 isoform 1 [Homo sapiens]
Length = 340
Score = 370 bits (950), Expect = e-103
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MVRPKKVCFSESSLPTGDRTRRSYYLNEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPG 60
MVRPKKVCFSESSLPTGDRTRRSYYLNEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPG
Sbjct: 155 MVRPKKVCFSESSLPTGDRTRRSYYLNEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPG 214
Query: 61 VTRLYGFTVANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAF 120
VTRLYGFTVANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAF
Sbjct: 215 VTRLYGFTVANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAF 274
Query: 121 SEFLINTYGILKQRPDLRANPLHSSPAALRKLVIDVVPPKFLGDSLLLLNCLCELSKEDG 180
SEFLINTYGILKQRPDLRANPLHSSPAALRKLVIDVVPPKFLGDSLLLLNCLCELSKEDG
Sbjct: 275 SEFLINTYGILKQRPDLRANPLHSSPAALRKLVIDVVPPKFLGDSLLLLNCLCELSKEDG 334
Query: 181 KPLFAW 186
KPLFAW
Sbjct: 335 KPLFAW 340
>gi|23346427 hypothetical protein LOC84221 isoform 2 [Homo sapiens]
Length = 186
Score = 370 bits (950), Expect = e-103
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MVRPKKVCFSESSLPTGDRTRRSYYLNEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPG 60
MVRPKKVCFSESSLPTGDRTRRSYYLNEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPG
Sbjct: 1 MVRPKKVCFSESSLPTGDRTRRSYYLNEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPG 60
Query: 61 VTRLYGFTVANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAF 120
VTRLYGFTVANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAF
Sbjct: 61 VTRLYGFTVANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAF 120
Query: 121 SEFLINTYGILKQRPDLRANPLHSSPAALRKLVIDVVPPKFLGDSLLLLNCLCELSKEDG 180
SEFLINTYGILKQRPDLRANPLHSSPAALRKLVIDVVPPKFLGDSLLLLNCLCELSKEDG
Sbjct: 121 SEFLINTYGILKQRPDLRANPLHSSPAALRKLVIDVVPPKFLGDSLLLLNCLCELSKEDG 180
Query: 181 KPLFAW 186
KPLFAW
Sbjct: 181 KPLFAW 186
>gi|197276668 spermatogenesis and centriole associated 1 isoform 1
[Homo sapiens]
Length = 591
Score = 156 bits (394), Expect = 1e-38
Identities = 79/150 (52%), Positives = 108/150 (72%), Gaps = 5/150 (3%)
Query: 40 RVVGEIAFQLDRRILAYVFPGVTRLYGFTVANIPEKIEQTSTKSLDGSVDERKLRELTQR 99
R+VGEIAFQLDRRIL+ +FP RLYGFTV+NIPEKI Q S D +DE+ + LTQR
Sbjct: 444 RLVGEIAFQLDRRILSSIFPERVRLYGFTVSNIPEKIIQASLNPSDHKLDEKLCQRLTQR 503
Query: 100 YLALSARLEKLGYSRDVHPAFSEFLINTYGILKQRPDLRANPLHSSPAA---LRKLVIDV 156
Y+++ RL+ LGY+ VHPA +E L+N YGIL++RP+L A+ P L+++V++
Sbjct: 504 YVSVMNRLQSLGYNGRVHPALTEQLVNAYGILRERPELAAS--EGGPYTVDFLQRVVVET 561
Query: 157 VPPKFLGDSLLLLNCLCELSKEDGKPLFAW 186
V P L D+LLLL+CL +L+ +DGKP+F W
Sbjct: 562 VHPGMLADALLLLSCLSQLAHDDGKPMFIW 591
>gi|239754974 PREDICTED: similar to spermatogenesis and centriole
associated 1 [Homo sapiens]
Length = 113
Score = 99.4 bits (246), Expect = 2e-21
Identities = 49/112 (43%), Positives = 75/112 (66%), Gaps = 5/112 (4%)
Query: 78 QTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAFSEFLINTYGILKQRPDL 137
+ S D +DE+ + LTQRY+++ RL+ LGY+ VHPA +E L+N YGIL++RP+L
Sbjct: 4 RASLNPSDHKLDEKLCQRLTQRYVSVMNRLQSLGYNGRVHPALTEQLVNAYGILRERPEL 63
Query: 138 RANPLHSSPAA---LRKLVIDVVPPKFLGDSLLLLNCLCELSKEDGKPLFAW 186
A+ P L+++V++ V P L D+LLLL+CL +L+ +DGKP+F W
Sbjct: 64 AAS--EGGPYTVDFLQRVVVETVHPGMLADALLLLSCLSQLAHDDGKPMFIW 113
>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 2 [Homo sapiens]
Length = 1403
Score = 30.8 bits (68), Expect = 0.70
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 72 IPEKIEQTSTKSLDGSVDE--RKLRELTQRYLALSARLEKLGYSRD 115
+P K+ + KS D +D+ RKL ++TQ+Y +EKL D
Sbjct: 732 VPLKVSEDMKKSHDAIIDDLNRKLLDVTQKYTEKKLEMEKLLLEND 777
>gi|59850762 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 1 [Homo sapiens]
Length = 1416
Score = 30.8 bits (68), Expect = 0.70
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 72 IPEKIEQTSTKSLDGSVDE--RKLRELTQRYLALSARLEKLGYSRD 115
+P K+ + KS D +D+ RKL ++TQ+Y +EKL D
Sbjct: 745 VPLKVSEDMKKSHDAIIDDLNRKLLDVTQKYTEKKLEMEKLLLEND 790
>gi|40068475 twinfilin 1 [Homo sapiens]
Length = 384
Score = 30.8 bits (68), Expect = 0.70
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 5 KKVCFSESS---LPTGDRTRRSYYLNEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPGV 61
KK S+SS L + R +NE+Q+ G + + + +AF + R F +
Sbjct: 169 KKYLLSQSSPAPLTAAEEELRQIKINEVQTDVGVDTKHQTLQGVAFPISRE----AFQAL 224
Query: 62 TRLYGFTVANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAFS 121
+L + + +I+ + + + +L++L +R SAR Y +
Sbjct: 225 EKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDSARYHFFLYKHSHEGDYL 284
Query: 122 EFLINTYGILKQRPDLRANPLHSS 145
E ++ Y + +R L+SS
Sbjct: 285 ESIVFIYSMPGYTCSIRERMLYSS 308
>gi|93204861 protein phosphatase 1, regulatory (inhibitor) subunit
9A [Homo sapiens]
Length = 1098
Score = 30.4 bits (67), Expect = 0.92
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 16 TGDRTRRSYYLNEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPGVTRLYGFTVANIPEK 75
T ++ RR L E Q +A + D GE A + + V PG V +PE
Sbjct: 606 TLEQERRQRELLE-QHYAQYDADDDETGEYATDEEEDEVGPVLPGSDM--AIEVFELPEN 662
Query: 76 IEQTSTKSLDGSVDERKLRELTQRYLALSARLEKL 110
+ S LD S K +EL ++ A ++KL
Sbjct: 663 EDMFSPSELDTSKLSHKFKELQIKHAVTEAEIQKL 697
>gi|4502079 adenosine monophosphate deaminase 3 isoform 1A [Homo
sapiens]
Length = 776
Score = 28.1 bits (61), Expect = 4.6
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 9 FSESSLPTGDRTRRSYYLNEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPGVTRLYGFT 68
F+ P G R YL + +++ G E AR+V E+A +L+ Y P ++ +YG +
Sbjct: 398 FNSKYNPVGASELRDLYL-KTENYLGGEYFARMVKEVARELEESKYQYSEPRLS-IYGRS 455
Query: 69 VANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAFSEFLINTY 128
P +L + K+ R++ R+ + S+ + P F + L N +
Sbjct: 456 PEEWP---------NLAYWFIQHKVYSPNMRWIIQVPRIYDIFRSKKLLPNFGKMLENIF 506
>gi|70906428 adenosine monophosphate deaminase 3 isoform 1C [Homo
sapiens]
Length = 774
Score = 28.1 bits (61), Expect = 4.6
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 9 FSESSLPTGDRTRRSYYLNEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPGVTRLYGFT 68
F+ P G R YL + +++ G E AR+V E+A +L+ Y P ++ +YG +
Sbjct: 396 FNSKYNPVGASELRDLYL-KTENYLGGEYFARMVKEVARELEESKYQYSEPRLS-IYGRS 453
Query: 69 VANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAFSEFLINTY 128
P +L + K+ R++ R+ + S+ + P F + L N +
Sbjct: 454 PEEWP---------NLAYWFIQHKVYSPNMRWIIQVPRIYDIFRSKKLLPNFGKMLENIF 504
>gi|70906426 adenosine monophosphate deaminase 3 isoform 1B [Homo
sapiens]
Length = 767
Score = 28.1 bits (61), Expect = 4.6
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 9 FSESSLPTGDRTRRSYYLNEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPGVTRLYGFT 68
F+ P G R YL + +++ G E AR+V E+A +L+ Y P ++ +YG +
Sbjct: 389 FNSKYNPVGASELRDLYL-KTENYLGGEYFARMVKEVARELEESKYQYSEPRLS-IYGRS 446
Query: 69 VANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAFSEFLINTY 128
P +L + K+ R++ R+ + S+ + P F + L N +
Sbjct: 447 PEEWP---------NLAYWFIQHKVYSPNMRWIIQVPRIYDIFRSKKLLPNFGKMLENIF 497
>gi|33188443 microfilament and actin filament cross-linker protein
isoform b [Homo sapiens]
Length = 5938
Score = 27.7 bits (60), Expect = 5.9
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 66 GFTVANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAFSEFLI 125
G V ++ ++ S G++ + KL++ T+RY AL ++ +LG + L+
Sbjct: 2381 GQKVLDMENSFKEGKEPSEIGNLVKDKLKDATERYTALHSKCTRLG-------SHLNMLL 2433
Query: 126 NTYGILKQRPDLRANPLHSSPAALRKLVIDVV 157
Y + D + + A + KL+ D V
Sbjct: 2434 GQYHQFQNSADSLQAWMQACEANVEKLLSDTV 2465
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 27.7 bits (60), Expect = 5.9
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 66 GFTVANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAFSEFLI 125
G V ++ ++ S G++ + KL++ T+RY AL ++ +LG + L+
Sbjct: 1879 GQKVLDMENSFKEGKEPSEIGNLVKDKLKDATERYTALHSKCTRLG-------SHLNMLL 1931
Query: 126 NTYGILKQRPDLRANPLHSSPAALRKLVIDVV 157
Y + D + + A + KL+ D V
Sbjct: 1932 GQYHQFQNSADSLQAWMQACEANVEKLLSDTV 1963
>gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo
sapiens]
Length = 496
Score = 27.3 bits (59), Expect = 7.8
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 112 YSRD------VHPAFSEFLINTYGILKQRPDLRANPLHSSPAALRKLVI 154
Y RD + A+S F +N+ G++ + + P HS P ++KL++
Sbjct: 427 YKRDKDEHYRTYDAYSTFYLNSSGLICRHRLDKLMPSHSPPTPVKKLLV 475
>gi|238624193 hypothetical protein LOC221545 isoform 2 [Homo
sapiens]
Length = 181
Score = 27.3 bits (59), Expect = 7.8
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 112 YSRD------VHPAFSEFLINTYGILKQRPDLRANPLHSSPAALRKLVI 154
Y RD + A+S F +N+ G++ + + P HS P ++KL++
Sbjct: 112 YKRDKDEHYRTYDAYSTFYLNSSGLICRHRLDKLMPSHSPPTPVKKLLV 160
>gi|158262031 hypothetical protein LOC221545 isoform 1 [Homo
sapiens]
Length = 315
Score = 27.3 bits (59), Expect = 7.8
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 112 YSRD------VHPAFSEFLINTYGILKQRPDLRANPLHSSPAALRKLVI 154
Y RD + A+S F +N+ G++ + + P HS P ++KL++
Sbjct: 246 YKRDKDEHYRTYDAYSTFYLNSSGLICRHRLDKLMPSHSPPTPVKKLLV 294
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,800,776
Number of Sequences: 37866
Number of extensions: 267533
Number of successful extensions: 571
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 16
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.