Search of human proteins with 228008396

Search of human proteins with 228008396

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Homo sapiens]
         (464 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ...   964   0.0  
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ...   964   0.0  
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ...   957   0.0  
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ...   938   0.0  
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ...   873   0.0  
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ...   847   0.0  
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...   785   0.0  
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...   785   0.0  
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...   779   0.0  
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...   779   0.0  
gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens]    356   2e-98
gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens]    340   1e-93
gi|20357575 apobec-1 complementation factor isoform 2 [Homo sapi...   334   9e-92
gi|20357572 apobec-1 complementation factor isoform 1 [Homo sapi...   334   9e-92
gi|21450675 RNA binding motif protein 46 [Homo sapiens]               333   2e-91
gi|20357578 apobec-1 complementation factor isoform 3 [Homo sapi...   318   9e-87
gi|34740339 dead end homolog 1 [Homo sapiens]                         134   1e-31
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s...   103   4e-22
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...    94   3e-19
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...    94   3e-19
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...    94   3e-19
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]      89   8e-18
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]      86   5e-17
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s...    86   9e-17
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa...    82   8e-16
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom...    78   2e-14
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom...    78   2e-14
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ...    77   3e-14
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s...    77   3e-14
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]           77   4e-14

>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 6 [Homo sapiens]
          Length = 562

 Score =  964 bits (2491), Expect = 0.0
 Identities = 464/464 (100%), Positives = 464/464 (100%)

Query: 1   MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
           MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
Sbjct: 99  MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158

Query: 61  SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
           SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218

Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
           AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278

Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
           PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 338

Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
           VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 398

Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 360
           ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP
Sbjct: 399 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 458

Query: 361 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 420
           DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR
Sbjct: 459 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 518

Query: 421 GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ 464
           GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ
Sbjct: 519 GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ 562


>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 2 [Homo sapiens]
          Length = 464

 Score =  964 bits (2491), Expect = 0.0
 Identities = 464/464 (100%), Positives = 464/464 (100%)

Query: 1   MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
           MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
Sbjct: 1   MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60

Query: 61  SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
           SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
Sbjct: 61  SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120

Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
           AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
Sbjct: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180

Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
           PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK
Sbjct: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240

Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
           VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
Sbjct: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300

Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 360
           ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP
Sbjct: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 360

Query: 361 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 420
           DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR
Sbjct: 361 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 420

Query: 421 GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ 464
           GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ
Sbjct: 421 GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ 464


>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 5 [Homo sapiens]
          Length = 561

 Score =  957 bits (2474), Expect = 0.0
 Identities = 463/464 (99%), Positives = 463/464 (99%), Gaps = 1/464 (0%)

Query: 1   MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
           MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
Sbjct: 99  MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158

Query: 61  SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
           SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218

Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
           AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278

Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
           PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 338

Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
           VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 398

Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 360
           ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP
Sbjct: 399 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 458

Query: 361 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 420
           DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR
Sbjct: 459 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 518

Query: 421 GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ 464
           GRAGYSQRGGPGSARGVRGARGGAQQQRGRG GKGVEAGPDLLQ
Sbjct: 519 GRAGYSQRGGPGSARGVRGARGGAQQQRGRG-GKGVEAGPDLLQ 561


>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 1 [Homo sapiens]
          Length = 623

 Score =  938 bits (2424), Expect = 0.0
 Identities = 451/451 (100%), Positives = 451/451 (100%)

Query: 1   MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
           MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
Sbjct: 99  MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158

Query: 61  SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
           SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218

Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
           AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278

Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
           PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 338

Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
           VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 398

Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 360
           ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP
Sbjct: 399 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 458

Query: 361 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 420
           DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR
Sbjct: 459 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 518

Query: 421 GRAGYSQRGGPGSARGVRGARGGAQQQRGRG 451
           GRAGYSQRGGPGSARGVRGARGGAQQQRGRG
Sbjct: 519 GRAGYSQRGGPGSARGVRGARGGAQQQRGRG 549


>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 3 [Homo sapiens]
          Length = 527

 Score =  873 bits (2256), Expect = 0.0
 Identities = 429/464 (92%), Positives = 429/464 (92%), Gaps = 35/464 (7%)

Query: 1   MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
           MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
Sbjct: 99  MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158

Query: 61  SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
           SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218

Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
           AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278

Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
           PDDKKKNRGFCFLEYEDHKTAAQ                                   VK
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQ-----------------------------------VK 303

Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
           VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 363

Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 360
           ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP
Sbjct: 364 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 423

Query: 361 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 420
           DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR
Sbjct: 424 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 483

Query: 421 GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ 464
           GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ
Sbjct: 484 GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ 527


>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 4 [Homo sapiens]
          Length = 588

 Score =  847 bits (2189), Expect = 0.0
 Identities = 416/451 (92%), Positives = 416/451 (92%), Gaps = 35/451 (7%)

Query: 1   MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
           MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
Sbjct: 99  MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158

Query: 61  SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
           SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218

Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
           AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278

Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
           PDDKKKNRGFCFLEYEDHKTAAQ                                   VK
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQ-----------------------------------VK 303

Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
           VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 363

Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 360
           ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP
Sbjct: 364 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 423

Query: 361 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 420
           DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR
Sbjct: 424 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 483

Query: 421 GRAGYSQRGGPGSARGVRGARGGAQQQRGRG 451
           GRAGYSQRGGPGSARGVRGARGGAQQQRGRG
Sbjct: 484 GRAGYSQRGGPGSARGVRGARGGAQQQRGRG 514


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score =  785 bits (2026), Expect = 0.0
 Identities = 383/457 (83%), Positives = 417/457 (91%), Gaps = 7/457 (1%)

Query: 1   MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
           MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 1   MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60

Query: 61  SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
            +GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 61  GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120

Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
           AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVTEGL DVILYHQ
Sbjct: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ 180

Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
           PDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMAKVK
Sbjct: 181 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK 240

Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
           VLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R  AVKAM+EMNGK++EG
Sbjct: 241 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300

Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGYGYP 359
           E IEIV AKPPD+KRKER+A RQA+++  Y+DYYY+ PP MPPP RGRGR GGRGGYGYP
Sbjct: 301 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 360

Query: 360 PDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRGRGA 416
           PDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V  RG GGRG RGA  P RGRGA
Sbjct: 361 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRGRGA 419

Query: 417 APPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRG 451
            PPRGRAGYSQRG P G  RG RG RGG AQQQRGRG
Sbjct: 420 PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 456


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score =  785 bits (2026), Expect = 0.0
 Identities = 383/457 (83%), Positives = 417/457 (91%), Gaps = 7/457 (1%)

Query: 1   MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
           MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 102 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 161

Query: 61  SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
            +GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 162 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 221

Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
           AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVTEGL DVILYHQ
Sbjct: 222 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ 281

Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
           PDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMAKVK
Sbjct: 282 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK 341

Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
           VLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R  AVKAM+EMNGK++EG
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 401

Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGYGYP 359
           E IEIV AKPPD+KRKER+A RQA+++  Y+DYYY+ PP MPPP RGRGR GGRGGYGYP
Sbjct: 402 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 461

Query: 360 PDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRGRGA 416
           PDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V  RG GGRG RGA  P RGRGA
Sbjct: 462 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRGRGA 520

Query: 417 APPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRG 451
            PPRGRAGYSQRG P G  RG RG RGG AQQQRGRG
Sbjct: 521 PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 557


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score =  779 bits (2012), Expect = 0.0
 Identities = 383/460 (83%), Positives = 417/460 (90%), Gaps = 10/460 (2%)

Query: 1   MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
           MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 1   MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60

Query: 61  SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
            +GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 61  GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120

Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVT---EGLTDVIL 177
           AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVT   EGL DVIL
Sbjct: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 180

Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 237
           YHQPDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMA
Sbjct: 181 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 240

Query: 238 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD 297
           KVKVLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R  AVKAM+EMNGK+
Sbjct: 241 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 300

Query: 298 LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGY 356
           +EGE IEIV AKPPD+KRKER+A RQA+++  Y+DYYY+ PP MPPP RGRGR GGRGGY
Sbjct: 301 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 360

Query: 357 GYPPDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRG 413
           GYPPDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V  RG GGRG RGA  P RG
Sbjct: 361 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRG 419

Query: 414 RGAAPPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRG 451
           RGA PPRGRAGYSQRG P G  RG RG RGG AQQQRGRG
Sbjct: 420 RGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 459


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score =  779 bits (2012), Expect = 0.0
 Identities = 383/460 (83%), Positives = 417/460 (90%), Gaps = 10/460 (2%)

Query: 1   MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
           MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 102 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 161

Query: 61  SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
            +GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 162 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 221

Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVT---EGLTDVIL 177
           AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVT   EGL DVIL
Sbjct: 222 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 281

Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 237
           YHQPDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMA
Sbjct: 282 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 341

Query: 238 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD 297
           KVKVLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R  AVKAM+EMNGK+
Sbjct: 342 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 401

Query: 298 LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGY 356
           +EGE IEIV AKPPD+KRKER+A RQA+++  Y+DYYY+ PP MPPP RGRGR GGRGGY
Sbjct: 402 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 461

Query: 357 GYPPDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRG 413
           GYPPDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V  RG GGRG RGA  P RG
Sbjct: 462 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRG 520

Query: 414 RGAAPPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRG 451
           RGA PPRGRAGYSQRG P G  RG RG RGG AQQQRGRG
Sbjct: 521 RGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 560


>gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens]
          Length = 593

 Score =  356 bits (914), Expect = 2e-98
 Identities = 211/455 (46%), Positives = 277/455 (60%), Gaps = 51/455 (11%)

Query: 13  KVADSSKG-PDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKI 71
           KV +   G P+EA + AL+ERTGY++    GQRKYGGPPP   + G  P  G E+FVGKI
Sbjct: 21  KVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPPG--WEGPHPQRGCEVFVGKI 78

Query: 72  PRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIR 131
           PRD++EDELVP+FE  G I++LRLMMD   G NRGYAFV +C K  A+ AV+  NN+EIR
Sbjct: 79  PRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRELNNYEIR 137

Query: 132 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFC 191
            G+ +GVC SV N RLF+G IPK K +E+ILEE +KVTEG+ DVI+Y    DK KNRGF 
Sbjct: 138 PGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFA 197

Query: 192 FLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTV 251
           F+EYE H+ AA ARR+LM G++++WG+   V+WA+P  D D +VM  VK+L+VRNL    
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIET 257

Query: 252 TEEILEKAFSQF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 309
           TE+ ++K+F QF  G +ERVKK++DYAF+HF  R+ AV AM  +NG +LEG  +E+  AK
Sbjct: 258 TEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAK 317

Query: 310 PPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDY- 368
           P D   KE+ ++ Q A                      RG G       P   Y  + Y 
Sbjct: 318 PVD---KEQYSRYQKA---------------------ARGGGAAEAAQQPSYVYSCDPYT 353

Query: 369 YDYYGYDYHNYRGGYEDPYYGYEDFQVGA-RGRGGRGARGAAPSRGRGAAPPRGRAGYSQ 427
             YYGY Y+   G   D +      + G+ RGRG    RGAA +R  G   PRG    S 
Sbjct: 354 LAYYGYPYNALIGPNRDYF-----VKAGSIRGRG----RGAAGNRAPG---PRG----SY 397

Query: 428 RGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDL 462
            GG  + RG+        + +G+ Q KG E  P+L
Sbjct: 398 LGGYSAGRGIYSR---YHEGKGKQQEKGYELVPNL 429


>gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens]
          Length = 524

 Score =  340 bits (873), Expect = 1e-93
 Identities = 187/390 (47%), Positives = 246/390 (63%), Gaps = 31/390 (7%)

Query: 13  KVADSSKG-PDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKI 71
           KV +   G P+EA + AL+ERTGY++    GQRKYGGPPP   + G  P  G E+FVGKI
Sbjct: 21  KVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPPG--WEGPHPQRGCEVFVGKI 78

Query: 72  PRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIR 131
           PRD++EDELVP+FE  G I++LRLMMD   G NRGYAFV +C K  A+ AV+  NN+EIR
Sbjct: 79  PRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRELNNYEIR 137

Query: 132 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFC 191
            G+ +GVC SV N RLF+G IPK K +E+ILEE +KVTEG+ DVI+Y    DK KNRGF 
Sbjct: 138 PGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFA 197

Query: 192 FLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTV 251
           F+EYE H+ AA ARR+LM G++++WG+   V+WA+P  D D +VM  VK+L+VRNL    
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIET 257

Query: 252 TEEILEKAFSQF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 309
           TE+ ++K+F QF  G +ERVKK++DYAF+HF  R+ AV AM  +NG +LEG  +E+  AK
Sbjct: 258 TEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAK 317

Query: 310 PPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDY- 368
           P D   KE+ ++ Q A                      RG G       P   Y  + Y 
Sbjct: 318 PVD---KEQYSRYQKA---------------------ARGGGAAEAAQQPSYVYSCDPYT 353

Query: 369 YDYYGYDYHNYRGGYEDPYYGYEDFQVGAR 398
             YYGY Y+   G   D +       +GA+
Sbjct: 354 LAYYGYPYNALIGPNRDYFVKVAIPAIGAQ 383


>gi|20357575 apobec-1 complementation factor isoform 2 [Homo
           sapiens]
          Length = 594

 Score =  334 bits (857), Expect = 9e-92
 Identities = 185/417 (44%), Positives = 253/417 (60%), Gaps = 24/417 (5%)

Query: 9   KQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFV 68
           K G  ++ + K   EA ++AL++RTGY+L    GQRKYGGPPP   +    P  G EIF+
Sbjct: 6   KSGDGLSGTQK---EAALRALVQRTGYSLVQENGQRKYGGPPPG--WDAAPPERGCEIFI 60

Query: 69  GKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH 128
           GK+PRDLFEDEL+PL EK G I+++R+MMD   G NRGYAFVTF  K  A+ A+K  NN+
Sbjct: 61  GKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNY 119

Query: 129 EIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNR 188
           EIR+G+ +GVC SV N RLFVG IPK+K +E+IL E  KVTEG+ DVI+Y    DK KNR
Sbjct: 120 EIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNR 179

Query: 189 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLA 248
           GF F+EYE H+ AA ARR+L+ G++++WG+   V+WA+P  + D + M+ VK+L+VRNL 
Sbjct: 180 GFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLM 239

Query: 249 NTVTEEILEKAFSQF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 306
            + +EE++EK F+    G +ERVKK++DYAF+HF  R+ AV+AM+ +NGK L+G  IE+ 
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 299

Query: 307 FAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYE 366
            AKP D+    R  +    +  M    Y Y    +  PT          Y   P +Y  +
Sbjct: 300 LAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGQVYDPTT--------TYLGAPVFYAPQ 351

Query: 367 DYYDYYGYDYHNYRGGYEDPYY--------GYEDFQVGARGRGGRGARGAAPSRGRG 415
            Y       +   +G   +            Y +  VGA G  G G RG     G G
Sbjct: 352 TYAAIPSLHFPATKGHLSNRAIIRAPSVREIYMNVPVGAAGVRGLGGRGYLAYTGLG 408


>gi|20357572 apobec-1 complementation factor isoform 1 [Homo
           sapiens]
          Length = 586

 Score =  334 bits (857), Expect = 9e-92
 Identities = 183/409 (44%), Positives = 250/409 (61%), Gaps = 16/409 (3%)

Query: 9   KQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFV 68
           K G  ++ + K   EA ++AL++RTGY+L    GQRKYGGPPP   +    P  G EIF+
Sbjct: 6   KSGDGLSGTQK---EAALRALVQRTGYSLVQENGQRKYGGPPPG--WDAAPPERGCEIFI 60

Query: 69  GKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH 128
           GK+PRDLFEDEL+PL EK G I+++R+MMD   G NRGYAFVTF  K  A+ A+K  NN+
Sbjct: 61  GKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNY 119

Query: 129 EIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNR 188
           EIR+G+ +GVC SV N RLFVG IPK+K +E+IL E  KVTEG+ DVI+Y    DK KNR
Sbjct: 120 EIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNR 179

Query: 189 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLA 248
           GF F+EYE H+ AA ARR+L+ G++++WG+   V+WA+P  + D + M+ VK+L+VRNL 
Sbjct: 180 GFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLM 239

Query: 249 NTVTEEILEKAFSQF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 306
            + +EE++EK F+    G +ERVKK++DYAF+HF  R+ AV+AM+ +NGK L+G  IE+ 
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 299

Query: 307 FAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYE 366
            AKP D+    R  +    +  M    Y Y    +  PT          Y   P +Y  +
Sbjct: 300 LAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGQVYDPTT--------TYLGAPVFYAPQ 351

Query: 367 DYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRG 415
            Y       +   +G   +          GA G  G G RG     G G
Sbjct: 352 TYAAIPSLHFPATKGHLSNRAIIRAPSVRGAAGVRGLGGRGYLAYTGLG 400


>gi|21450675 RNA binding motif protein 46 [Homo sapiens]
          Length = 533

 Score =  333 bits (854), Expect = 2e-91
 Identities = 164/300 (54%), Positives = 222/300 (74%), Gaps = 5/300 (1%)

Query: 22  DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 81
           +EA + AL+E+TGY +    GQRK+GGPPP   + G  P  G E+FVGKIPRD++EDELV
Sbjct: 21  NEAALLALMEKTGYNMVQENGQRKFGGPPPG--WEGPPPPRGCEVFVGKIPRDMYEDELV 78

Query: 82  PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 141
           P+FE+AG I++ RLMM+  +G NRGYAFV + TKE AQ A+++ NN+EIR GK IGVC+S
Sbjct: 79  PVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137

Query: 142 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 201
           + N RLF+G+IPK K KE+IL+E  KVTEG+ DVI+Y    DK KNRGF F+EYE H+ A
Sbjct: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197

Query: 202 AQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFS 261
           A ARR+L+ G  ++WG+   V+WADP ++ D E M +VKVL+VRNL  + TEE ++  F+
Sbjct: 198 AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFN 257

Query: 262 QF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 319
           +F  G +ERVKKL+DYAF+HF  R+ AV AM  MNGK ++G +IE+  AKP +++   R+
Sbjct: 258 KFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQ 317


>gi|20357578 apobec-1 complementation factor isoform 3 [Homo
           sapiens]
          Length = 594

 Score =  318 bits (814), Expect = 9e-87
 Identities = 172/381 (45%), Positives = 232/381 (60%), Gaps = 13/381 (3%)

Query: 37  LDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLM 96
           L+   GQRKYGGPPP   +    P  G EIF+GK+PRDLFEDEL+PL EK G I+++R+M
Sbjct: 39  LEKENGQRKYGGPPPG--WDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMM 96

Query: 97  MDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSK 156
           MD   G NRGYAFVTF  K  A+ A+K  NN+EIR+G+ +GVC SV N RLFVG IPK+K
Sbjct: 97  MD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTK 155

Query: 157 TKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVW 216
            +E+IL E  KVTEG+ DVI+Y    DK KNRGF F+EYE H+ AA ARR+L+ G++++W
Sbjct: 156 KREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLW 215

Query: 217 GNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQF--GKLERVKKLKD 274
           G+   V+WA+P  + D + M+ VK+L+VRNL  + +EE++EK F+    G +ERVKK++D
Sbjct: 216 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 275

Query: 275 YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYY 334
           YAF+HF  R+ AV+AM+ +NGK L+G  IE+  AKP D+    R  +    +  M    Y
Sbjct: 276 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEY 335

Query: 335 YYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQ 394
            Y    +  PT          Y   P +Y  + Y       +   +G   +         
Sbjct: 336 TYSLGQVYDPTT--------TYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAIIRAPSV 387

Query: 395 VGARGRGGRGARGAAPSRGRG 415
            GA G  G G RG     G G
Sbjct: 388 RGAAGVRGLGGRGYLAYTGLG 408


>gi|34740339 dead end homolog 1 [Homo sapiens]
          Length = 353

 Score =  134 bits (338), Expect = 1e-31
 Identities = 70/206 (33%), Positives = 114/206 (55%), Gaps = 5/206 (2%)

Query: 22  DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 81
           ++A ++A +  TG  L    GQRKYGGPPP  V  G  P  G+E+F+G++P+D++E +L+
Sbjct: 18  NKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDVYEHQLI 75

Query: 82  PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 141
           PLF++ G +++ RLMM   +GLNRG+A+  + ++  AQ A+   +NH +R    + VC S
Sbjct: 76  PLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRS 134

Query: 142 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 201
                L V  +P + T+  +L     +  GL +  L   P           L++  H+ A
Sbjct: 135 TEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAA 192

Query: 202 AQARRRLMSGKVKVWGNVGTVEWADP 227
           A A++ L+ G+  + G    VEW  P
Sbjct: 193 AMAKKALVEGQSHLCGEQVAVEWLKP 218


>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
           sapiens]
          Length = 370

 Score =  103 bits (256), Expect = 4e-22
 Identities = 77/284 (27%), Positives = 141/284 (49%), Gaps = 33/284 (11%)

Query: 66  IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 125
           ++VG +  D+ ED L   F   GP+  +R+  D +T  + GYA+V F     AQ+A+   
Sbjct: 12  LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71

Query: 126 NNHEIRSGKHIGVCISVAN--------NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
           N  +I  GK I +  S  +          +F+ ++ KS   + + E FS   + L+  ++
Sbjct: 72  N-FDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130

Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 237
                D + ++G+ F+ +++   A +A    M+GK+     V    + +  +D + E+ +
Sbjct: 131 ----SDDQGSKGYAFVHFQNQSAADRAIEE-MNGKLLKGCKVFVGRFKNR-KDREAELRS 184

Query: 238 KVKV---LFVRNLANTVTEEILEKAFSQFGKLERVK-------KLKDYAFIHFDERDGAV 287
           K      ++++N    + +E L+  FS++GK   VK       K K + F+ FD  + A 
Sbjct: 185 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAK 244

Query: 288 KAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYD 331
           KA+EEMNG+D+ G+ I +         R ++K +RQA   QM++
Sbjct: 245 KAVEEMNGRDINGQLIFV--------GRAQKKVERQAELKQMFE 280



 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 73/284 (25%), Positives = 121/284 (42%), Gaps = 55/284 (19%)

Query: 66  IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 125
           +F+  + + +    L   F   G I   ++M D     ++GYAFV F  + AA  A++  
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157

Query: 126 NNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILE----EFSKV----------TEG 171
           N      GK +  C      ++FVG     K +E  L     EF+ V           E 
Sbjct: 158 N------GKLLKGC------KVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDER 205

Query: 172 LTDVILYH--------QPDDKKKNRGFCFLEYEDHKTAAQARRRL----MSGKV------ 213
           L DV   +          D   K++GF F+ ++ H+ A +A   +    ++G++      
Sbjct: 206 LKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 265

Query: 214 --KVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK 271
             KV       +  + ++         VK L+++NL +T+ +E L   FS FG + RVK 
Sbjct: 266 QKKVERQAELKQMFEQLKRERIRGCQGVK-LYIKNLDDTIDDEKLRNEFSSFGSISRVKV 324

Query: 272 L------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 309
           +      K +  I F   + A KAM EMNG+ L  + + I  A+
Sbjct: 325 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 74/286 (25%), Positives = 142/286 (49%), Gaps = 25/286 (8%)

Query: 66  IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 125
           ++VG +  D+ E  L   F  AGP+  +R+  D +T  + GYA+V F     A+ A+   
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 126 NNHEIRSGKHIGVCISVANNRL--------FVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
           N  ++  GK I +  S  +  L        F+ ++ KS   + + + FS     L+  ++
Sbjct: 73  N-FDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 237
                D+  ++G+ F+ +E  + A +A  + M+G +     V    +    ++ + E+ A
Sbjct: 132 C----DENGSKGYAFVHFETQEAADKAIEK-MNGMLLNDRKVFVGRFKSR-KEREAELGA 185

Query: 238 KVKV---LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAV 287
           K K    ++++N    V +E L++ FSQFGK   VK ++D       + F+ +++ + A 
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDAN 245

Query: 288 KAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDY 333
           KA+EEMNGK++ G+ I +  A+   +++ E K + +  K +    Y
Sbjct: 246 KAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY 291



 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 78/310 (25%), Positives = 144/310 (46%), Gaps = 49/310 (15%)

Query: 48  GPPPDSVYSGQQPSVGTE----IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL 103
           G P   ++S + PS+       +F+  + + +    L   F   G I   +++ D     
Sbjct: 79  GKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NG 136

Query: 104 NRGYAFVTFCTKEAAQEAVK-----LYNNHEIRSGK---------HIGVCISVANNRLFV 149
           ++GYAFV F T+EAA +A++     L N+ ++  G+          +G       N +++
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYI 195

Query: 150 GSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLM 209
            +  +    E + E FS+  + L+  ++    D   K++GF F+ YE H+ A +A    M
Sbjct: 196 KNFGEEVDDESLKELFSQFGKTLSVKVMR---DPNGKSKGFGFVSYEKHEDANKAVEE-M 251

Query: 210 SGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVL-------------FVRNLANTVTEEIL 256
           +GK ++ G +  V  A    +   E+  K + L             +++NL +T+ +E L
Sbjct: 252 NGK-EISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310

Query: 257 EKAFSQFGKLERVK------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 310
            K FS FG +   K      + K + F+ F   + A KA+ EMNG+ +  + + +  A  
Sbjct: 311 RKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA-- 368

Query: 311 PDQKRKERKA 320
             Q+++ERKA
Sbjct: 369 --QRKEERKA 376


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 74/286 (25%), Positives = 142/286 (49%), Gaps = 25/286 (8%)

Query: 66  IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 125
           ++VG +  D+ E  L   F  AGP+  +R+  D +T  + GYA+V F     A+ A+   
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 126 NNHEIRSGKHIGVCISVANNRL--------FVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
           N  ++  GK I +  S  +  L        F+ ++ KS   + + + FS     L+  ++
Sbjct: 73  N-FDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 237
                D+  ++G+ F+ +E  + A +A  + M+G +     V    +    ++ + E+ A
Sbjct: 132 C----DENGSKGYAFVHFETQEAADKAIEK-MNGMLLNDRKVFVGRFKSR-KEREAELGA 185

Query: 238 KVKV---LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAV 287
           K K    ++++N    V +E L++ FSQFGK   VK ++D       + F+ +++ + A 
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDAN 245

Query: 288 KAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDY 333
           KA+EEMNGK++ G+ I +  A+   +++ E K + +  K +    Y
Sbjct: 246 KAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY 291



 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 78/310 (25%), Positives = 144/310 (46%), Gaps = 49/310 (15%)

Query: 48  GPPPDSVYSGQQPSVGTE----IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL 103
           G P   ++S + PS+       +F+  + + +    L   F   G I   +++ D     
Sbjct: 79  GKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NG 136

Query: 104 NRGYAFVTFCTKEAAQEAVK-----LYNNHEIRSGK---------HIGVCISVANNRLFV 149
           ++GYAFV F T+EAA +A++     L N+ ++  G+          +G       N +++
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYI 195

Query: 150 GSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLM 209
            +  +    E + E FS+  + L+  ++    D   K++GF F+ YE H+ A +A    M
Sbjct: 196 KNFGEEVDDESLKELFSQFGKTLSVKVMR---DPNGKSKGFGFVSYEKHEDANKAVEE-M 251

Query: 210 SGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVL-------------FVRNLANTVTEEIL 256
           +GK ++ G +  V  A    +   E+  K + L             +++NL +T+ +E L
Sbjct: 252 NGK-EISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310

Query: 257 EKAFSQFGKLERVK------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 310
            K FS FG +   K      + K + F+ F   + A KA+ EMNG+ +  + + +  A  
Sbjct: 311 RKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA-- 368

Query: 311 PDQKRKERKA 320
             Q+++ERKA
Sbjct: 369 --QRKEERKA 376


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 74/286 (25%), Positives = 142/286 (49%), Gaps = 25/286 (8%)

Query: 66  IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 125
           ++VG +  D+ E  L   F  AGP+  +R+  D +T  + GYA+V F     A+ A+   
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 126 NNHEIRSGKHIGVCISVANNRL--------FVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
           N  ++  GK I +  S  +  L        F+ ++ KS   + + + FS     L+  ++
Sbjct: 73  N-FDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 237
                D+  ++G+ F+ +E  + A +A  + M+G +     V    +    ++ + E+ A
Sbjct: 132 C----DENGSKGYAFVHFETQEAADKAIEK-MNGMLLNDRKVFVGRFKSR-KEREAELGA 185

Query: 238 KVKV---LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAV 287
           K K    ++++N    V +E L++ FSQFGK   VK ++D       + F+ +++ + A 
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDAN 245

Query: 288 KAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDY 333
           KA+EEMNGK++ G+ I +  A+   +++ E K + +  K +    Y
Sbjct: 246 KAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY 291



 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 78/310 (25%), Positives = 144/310 (46%), Gaps = 49/310 (15%)

Query: 48  GPPPDSVYSGQQPSVGTE----IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL 103
           G P   ++S + PS+       +F+  + + +    L   F   G I   +++ D     
Sbjct: 79  GKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NG 136

Query: 104 NRGYAFVTFCTKEAAQEAVK-----LYNNHEIRSGK---------HIGVCISVANNRLFV 149
           ++GYAFV F T+EAA +A++     L N+ ++  G+          +G       N +++
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYI 195

Query: 150 GSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLM 209
            +  +    E + E FS+  + L+  ++    D   K++GF F+ YE H+ A +A    M
Sbjct: 196 KNFGEEVDDESLKELFSQFGKTLSVKVMR---DPNGKSKGFGFVSYEKHEDANKAVEE-M 251

Query: 210 SGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVL-------------FVRNLANTVTEEIL 256
           +GK ++ G +  V  A    +   E+  K + L             +++NL +T+ +E L
Sbjct: 252 NGK-EISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310

Query: 257 EKAFSQFGKLERVK------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 310
            K FS FG +   K      + K + F+ F   + A KA+ EMNG+ +  + + +  A  
Sbjct: 311 RKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA-- 368

Query: 311 PDQKRKERKA 320
             Q+++ERKA
Sbjct: 369 --QRKEERKA 376


>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
          Length = 631

 Score = 89.0 bits (219), Expect = 8e-18
 Identities = 75/292 (25%), Positives = 142/292 (48%), Gaps = 30/292 (10%)

Query: 60  PSVGT-EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAA 118
           PS  T  ++VG +  D+ E  L   F  AGPI  +R+  D +T  +  YA+V F   + A
Sbjct: 6   PSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDA 65

Query: 119 QEAVKLYNNHEIRSGKHIGVCISVAN--------NRLFVGSIPKSKTKEQILEEFSKVTE 170
           + A+   N  ++  GK + +  S  +          +FV ++ KS   + + +  S    
Sbjct: 66  EHALDTMN-FDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS---- 120

Query: 171 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 230
              +++  +   D+  ++G+ F+ +E H+ A +A ++ M+G +     V   ++    ++
Sbjct: 121 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKK-MNGMLLNGRKVFVGQFKSR-KE 178

Query: 231 PDPEVMAKVKV---LFVRNLANTVTEEILEKAFSQFGKLERVK-------KLKDYAFIHF 280
            + E+ A+ K    ++++N    + +E L+  F +FG    VK       K K + F+ F
Sbjct: 179 REAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 238

Query: 281 DERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDD 332
           +  + A KA++EMNGK+L G+ I +  A    QK+ ER+ + +    QM  D
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRA----QKKVERQTELKRTFEQMKQD 286



 Score = 72.8 bits (177), Expect = 6e-13
 Identities = 86/326 (26%), Positives = 132/326 (40%), Gaps = 65/326 (19%)

Query: 48  GPPPDSVYSGQQPSVGTE----IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL 103
           G P   ++S + PS+       IFV  + + +    L       G I    ++ D     
Sbjct: 79  GKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NG 136

Query: 104 NRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIL- 162
           ++GY FV F T EAA+ A+K  N   +   K            +FVG     K +E  L 
Sbjct: 137 SKGYGFVHFETHEAAERAIKKMNGMLLNGRK------------VFVGQFKSRKEREAELG 184

Query: 163 ---EEFSKV----------TEGLTDVILYHQP--------DDKKKNRGFCFLEYEDHKTA 201
              +EF  V           E L D+     P        D+  K++GF F+ +E H+ A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244

Query: 202 AQARRRL----MSGKVKVWGNVGT-----VEWADPIEDPDPEVMAKVKV--LFVRNLANT 250
            +A   +    ++GK    G          E     E    + + + +V  L+V+NL + 
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDG 304

Query: 251 VTEEILEKAFSQFGKLERVK------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIE 304
           + +E L KAFS FG +   K      + K + F+ F   + A KA+ EMNG+        
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR-------- 356

Query: 305 IVFAKPPDQKRKERKAQRQAAKNQMY 330
           IV  KP      +RK +RQA     Y
Sbjct: 357 IVATKPLYVALAQRKEERQAYLTNEY 382


>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
          Length = 636

 Score = 86.3 bits (212), Expect = 5e-17
 Identities = 73/285 (25%), Positives = 137/285 (48%), Gaps = 29/285 (10%)

Query: 66  IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 125
           ++VG +  D+ E  L   F  AGPI  +R+  D +T  + GYA+V F     A+ A+   
Sbjct: 13  LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 126 NNHEIRSGKHIGVCISVAN--------NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
           N  ++  GK + +  S  +          +F+ ++ KS   + + + FS     L+  ++
Sbjct: 73  N-FDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 237
                D+  ++G+ F+ +E  + A +A  + M+G +     V    +    ++ + E+ A
Sbjct: 132 C----DENGSKGYGFVHFETQEAAERAIEK-MNGMLLNDRKVFVGRFKSR-KEREAELGA 185

Query: 238 KVKV---LFVRNLANTVTEEILEKAFSQFGKLERVK-------KLKDYAFIHFDERDGAV 287
           + K    ++++N    + +E L+  F +FG    VK       K K + F+ F+  + A 
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245

Query: 288 KAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDD 332
           KA++EMNGK+L G+ I +  A    QK+ ER+ + +    QM  D
Sbjct: 246 KAVDEMNGKELNGKQIYVGRA----QKKVERQTELKRKFEQMKQD 286



 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 80/320 (25%), Positives = 140/320 (43%), Gaps = 53/320 (16%)

Query: 48  GPPPDSVYSGQQPSVGTE----IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL 103
           G P   ++S + PS+       IF+  + + +    L   F   G I   +++ D     
Sbjct: 79  GKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NG 136

Query: 104 NRGYAFVTFCTKEAAQEAVK-----LYNNHEIRSGK---------HIGVCISVANNRLFV 149
           ++GY FV F T+EAA+ A++     L N+ ++  G+          +G       N +++
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-VYI 195

Query: 150 GSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLM 209
            +  +    E++ + F K    L+  ++    D+  K++GF F+ +E H+ A +A    M
Sbjct: 196 KNFGEDMDDERLKDLFGKFGPALSVKVM---TDESGKSKGFGFVSFERHEDAQKAVDE-M 251

Query: 210 SGKVKVWGNVGTVEWADPIEDPDPEVMAKVKV-------------LFVRNLANTVTEEIL 256
           +GK ++ G    V  A    +   E+  K +              L+V+NL + + +E L
Sbjct: 252 NGK-ELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310

Query: 257 EKAFSQFGKLERVK------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 310
            K FS FG +   K      + K + F+ F   + A KA+ EMNG+        IV  KP
Sbjct: 311 RKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR--------IVATKP 362

Query: 311 PDQKRKERKAQRQAAKNQMY 330
                 +RK +RQA     Y
Sbjct: 363 LYVALAQRKEERQAHLTNQY 382


>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
           sapiens]
          Length = 614

 Score = 85.5 bits (210), Expect = 9e-17
 Identities = 77/285 (27%), Positives = 133/285 (46%), Gaps = 29/285 (10%)

Query: 66  IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 125
           ++VG +  D+ E  L   F  AGPI  +R+  D  T  + GYA++ F     A+ A+   
Sbjct: 13  LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72

Query: 126 NNHEIRSGKHIGVCISVAN--------NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
            N E+  G+ I +  S  +          +F+ ++  S   + + + FS       +++ 
Sbjct: 73  -NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST----FGNILS 127

Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQA---RRRLMSGKVKVWGNVGTVEWADPIEDPDPE 234
                D+  +RGF F+ +E H+ A QA      ++    KV+  VG  +     E     
Sbjct: 128 CKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVF--VGHFKSRREREAELGA 185

Query: 235 VMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAV 287
              +   ++V+NL   V E+ L+  FSQFGK+  VK ++D       + F++F++ + A 
Sbjct: 186 RALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQ 245

Query: 288 KAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDD 332
           KA+  MNGK++ G  +    A    QKR ER+ + +    QM  D
Sbjct: 246 KAVVHMNGKEVSGRLLYAGRA----QKRVERQNELKRRFEQMKQD 286



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 72/310 (23%), Positives = 135/310 (43%), Gaps = 49/310 (15%)

Query: 48  GPPPDSVYSGQQPSVGTE----IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL 103
           G P   ++S + P +       IF+  +   +    L   F   G I   ++  D     
Sbjct: 79  GQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-- 136

Query: 104 NRGYAFVTFCTKEAAQEAVKLYNNHEIRSGK--------------HIGVCISVANNRLFV 149
           +RG+ FV F T EAAQ+A+   N   +   K               +G       N ++V
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN-IYV 195

Query: 150 GSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLM 209
            ++P    ++ + + FS+  + L+  ++    D+   +R F F+ +E H+ A +A    M
Sbjct: 196 KNLPVDVDEQGLQDLFSQFGKMLSVKVMR---DNSGHSRCFGFVNFEKHEEAQKAVVH-M 251

Query: 210 SGKVKVWGNVGTVEWADPIEDPDPEVMAKVKV-------------LFVRNLANTVTEEIL 256
           +GK +V G +     A    +   E+  + +              L+V+NL +++ ++ L
Sbjct: 252 NGK-EVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310

Query: 257 EKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 310
            K FS +G +   K +      K + F+ F   + A KA+ EMNG+ +  + + +  A  
Sbjct: 311 RKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA-- 368

Query: 311 PDQKRKERKA 320
             Q+++ERKA
Sbjct: 369 --QRKEERKA 376


>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
           sapiens]
          Length = 485

 Score = 82.4 bits (202), Expect = 8e-16
 Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 12/173 (6%)

Query: 47  GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 106
           G  PP     G +     ++FVG+IPR L E +L PLFE+ G I++L ++ DP TG+++G
Sbjct: 28  GPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKG 87

Query: 107 YAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANN--------RLFVGSIPKSKTK 158
            AF+T+C +++A +A    +  +   G    + +  A++        +LFVG + K +++
Sbjct: 88  CAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSE 147

Query: 159 EQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSG 211
           E +L  F      + +  +   PD   K  G  F+++  H T AQA    + G
Sbjct: 148 EDVLRLFQPFGV-IDECTVLRGPDGSSK--GCAFVKFSSH-TEAQAAIHALHG 196



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 22/82 (26%), Positives = 41/82 (50%)

Query: 49  PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 108
           PPP      ++   G  +F+  +P++  + EL  +F   G I   ++ MD  T  ++ + 
Sbjct: 385 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG 444

Query: 109 FVTFCTKEAAQEAVKLYNNHEI 130
           FV+F    +AQ A++  N  +I
Sbjct: 445 FVSFDNPASAQAAIQAMNGFQI 466



 Score = 33.5 bits (75), Expect = 0.42
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 200 TAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKA 259
           T ++ARR+           VG+     P   PD         LFV  +   + E+ L+  
Sbjct: 5   TESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPL 64

Query: 260 FSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 311
           F QFG++  +  LKD         AF+ +  RD A+KA   ++ +         +  KP 
Sbjct: 65  FEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPA 124

Query: 312 DQKRK 316
           D + +
Sbjct: 125 DSESR 129



 Score = 30.4 bits (67), Expect = 3.6
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 242 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 293
           LF+ +L     +  L + F  FG +   K   D        + F+ FD    A  A++ M
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 461

Query: 294 NGKDLEGENIEIVFAKPPD 312
           NG  +  + +++   +P D
Sbjct: 462 NGFQIGMKRLKVQLKRPKD 480


>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 85/310 (27%), Positives = 127/310 (40%), Gaps = 26/310 (8%)

Query: 146 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQAR 205
           +LF+G +    T E +   F +    LTD ++   P+ K+ +RGF F+ Y    T  +  
Sbjct: 15  KLFIGGLSFETTDESLRSHFEQWGT-LTDCVVMRDPNTKR-SRGFGFVTYA---TVEEVD 69

Query: 206 RRLMSGKVKVWGNVGTVEWADPIEDPD-PEVMAKVKVLFVRNLANTVTEEILEKAFSQFG 264
             + +   KV G V   + A   ED   P     VK +FV  +     E  L   F Q+G
Sbjct: 70  AAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129

Query: 265 KLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 316
           K+E ++        K + +AF+ FD+ D   K + +     ++G N E+  A P  +   
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVKGHNCEVRKALPKQEMAS 188

Query: 317 ERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYP---PDYYGYEDYYDYYG 373
              +QR    +  +      G        RG    GRGG+G       Y G  D Y+ +G
Sbjct: 189 ASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFG 248

Query: 374 YDYHNYRGG--YED-PYYGYEDFQVGARGRGGRGARGAAPSRGRGA--APPRGRAGY--- 425
            D  N+ GG  Y D   Y  +    G    G  G R + P  G G   A P+ + GY   
Sbjct: 249 NDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVS 308

Query: 426 SQRGGPGSAR 435
           S     GS R
Sbjct: 309 SSSSSYGSGR 318



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 26/160 (16%)

Query: 56  SGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTK 115
           S ++P    ++F+G +  +  ++ L   FE+ G + D  +M DP T  +RG+ FVT+ T 
Sbjct: 6   SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65

Query: 116 EAAQEAVKLYNNHEI-----------------RSGKHIGVCISVANNRLFVGSIPKSKTK 158
           E    A+     H++                 R G H+ V       ++FVG I K  T+
Sbjct: 66  EEVDAAMNT-TPHKVDGRVVEPKRAVSREDSQRPGAHLTV------KKIFVGGI-KEDTE 117

Query: 159 EQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH 198
           E  L ++ +   G  +VI         K RGF F+ ++DH
Sbjct: 118 EHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 25  KIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLF 84
           ++ A +  T + +D    + K      DS   G   +V  +IFVG I  D  E  L   F
Sbjct: 67  EVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYF 125

Query: 85  EKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 122
           E+ G I  + +M D  +G  RG+AFVTF   ++  + V
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 54/244 (22%), Positives = 92/244 (37%), Gaps = 27/244 (11%)

Query: 233 PEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKL--------ERVKKLKDYAFIHF---D 281
           P+   +++ LF+  L+   T+E L   F Q+G L           K+ + + F+ +   +
Sbjct: 7   PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66

Query: 282 ERDGAVKAM-EEMNGKDLEGEN-IEIVFAKPPDQKRKERK-----AQRQAAKNQMYDDYY 334
           E D A+     +++G+ +E +  +    ++ P      +K      +    ++ + D + 
Sbjct: 67  EVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 126

Query: 335 YYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYD------YYGYDYHNYRGGYEDPYY 388
            YG   +      RG G + G+ +    +   D  D      Y+    HN       P  
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVT--FDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ 184

Query: 389 GYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAG-YSQRGGPGSARGVRGARGGAQQQ 447
                    RGR G G  G     G G     GR G +S RGG G + G  G  G     
Sbjct: 185 EMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGY 244

Query: 448 RGRG 451
            G G
Sbjct: 245 NGFG 248


>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 85/310 (27%), Positives = 127/310 (40%), Gaps = 26/310 (8%)

Query: 146 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQAR 205
           +LF+G +    T E +   F +    LTD ++   P+ K+ +RGF F+ Y    T  +  
Sbjct: 15  KLFIGGLSFETTDESLRSHFEQWGT-LTDCVVMRDPNTKR-SRGFGFVTYA---TVEEVD 69

Query: 206 RRLMSGKVKVWGNVGTVEWADPIEDPD-PEVMAKVKVLFVRNLANTVTEEILEKAFSQFG 264
             + +   KV G V   + A   ED   P     VK +FV  +     E  L   F Q+G
Sbjct: 70  AAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129

Query: 265 KLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 316
           K+E ++        K + +AF+ FD+ D   K + +     ++G N E+  A P  +   
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVKGHNCEVRKALPKQEMAS 188

Query: 317 ERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYP---PDYYGYEDYYDYYG 373
              +QR    +  +      G        RG    GRGG+G       Y G  D Y+ +G
Sbjct: 189 ASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFG 248

Query: 374 YDYHNYRGG--YED-PYYGYEDFQVGARGRGGRGARGAAPSRGRGA--APPRGRAGY--- 425
            D  N+ GG  Y D   Y  +    G    G  G R + P  G G   A P+ + GY   
Sbjct: 249 NDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVS 308

Query: 426 SQRGGPGSAR 435
           S     GS R
Sbjct: 309 SSSSSYGSGR 318



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 26/160 (16%)

Query: 56  SGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTK 115
           S ++P    ++F+G +  +  ++ L   FE+ G + D  +M DP T  +RG+ FVT+ T 
Sbjct: 6   SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65

Query: 116 EAAQEAVKLYNNHEI-----------------RSGKHIGVCISVANNRLFVGSIPKSKTK 158
           E    A+     H++                 R G H+ V       ++FVG I K  T+
Sbjct: 66  EEVDAAMNT-TPHKVDGRVVEPKRAVSREDSQRPGAHLTV------KKIFVGGI-KEDTE 117

Query: 159 EQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH 198
           E  L ++ +   G  +VI         K RGF F+ ++DH
Sbjct: 118 EHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 25  KIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLF 84
           ++ A +  T + +D    + K      DS   G   +V  +IFVG I  D  E  L   F
Sbjct: 67  EVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYF 125

Query: 85  EKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 122
           E+ G I  + +M D  +G  RG+AFVTF   ++  + V
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 54/244 (22%), Positives = 92/244 (37%), Gaps = 27/244 (11%)

Query: 233 PEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKL--------ERVKKLKDYAFIHF---D 281
           P+   +++ LF+  L+   T+E L   F Q+G L           K+ + + F+ +   +
Sbjct: 7   PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66

Query: 282 ERDGAVKAM-EEMNGKDLEGEN-IEIVFAKPPDQKRKERK-----AQRQAAKNQMYDDYY 334
           E D A+     +++G+ +E +  +    ++ P      +K      +    ++ + D + 
Sbjct: 67  EVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 126

Query: 335 YYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYD------YYGYDYHNYRGGYEDPYY 388
            YG   +      RG G + G+ +    +   D  D      Y+    HN       P  
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVT--FDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ 184

Query: 389 GYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAG-YSQRGGPGSARGVRGARGGAQQQ 447
                    RGR G G  G     G G     GR G +S RGG G + G  G  G     
Sbjct: 185 EMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGY 244

Query: 448 RGRG 451
            G G
Sbjct: 245 NGFG 248


>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
           [Homo sapiens]
          Length = 320

 Score = 77.4 bits (189), Expect = 3e-14
 Identities = 84/313 (26%), Positives = 127/313 (40%), Gaps = 26/313 (8%)

Query: 146 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQAR 205
           +LF+G +    T E +   F +    LTD ++   P+ K+ +RGF F+ Y    T  +  
Sbjct: 15  KLFIGGLSFETTDESLRSHFEQWGT-LTDCVVMRDPNTKR-SRGFGFVTYA---TVEEVD 69

Query: 206 RRLMSGKVKVWGNVGTVEWADPIEDPD-PEVMAKVKVLFVRNLANTVTEEILEKAFSQFG 264
             + +   KV G V   + A   ED   P     VK +FV  +     E  L   F Q+G
Sbjct: 70  AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129

Query: 265 KLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 316
           K+E ++        K + +AF+ FD+ D   K + +     + G N E+  A    +   
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188

Query: 317 ERKAQRQAAKNQMYDDYY---YYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYG 373
              +QR  + +  +       + G  +        GRGG GG      Y G  D Y+ +G
Sbjct: 189 ASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFG 248

Query: 374 YDYHNYRGG--YED-PYYGYEDFQVGARGRGGRGARGAAPSRGRGA--APPRGRAGYSQR 428
            D  N+ GG  Y D   Y  +    G    G  G R + P  G G   A PR + GY   
Sbjct: 249 NDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGY--- 305

Query: 429 GGPGSARGVRGAR 441
           GG  S+      R
Sbjct: 306 GGSSSSSSYGSGR 318



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 26/160 (16%)

Query: 56  SGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTK 115
           S ++P    ++F+G +  +  ++ L   FE+ G + D  +M DP T  +RG+ FVT+ T 
Sbjct: 6   SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65

Query: 116 EAAQEAVKLYNNHEI-----------------RSGKHIGVCISVANNRLFVGSIPKSKTK 158
           E    A+     H++                 R G H+ V       ++FVG I K  T+
Sbjct: 66  EEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTV------KKIFVGGI-KEDTE 117

Query: 159 EQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH 198
           E  L ++ +   G  +VI         K RGF F+ ++DH
Sbjct: 118 EHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 27/244 (11%)

Query: 233 PEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKL--------ERVKKLKDYAFIHF---D 281
           P+   +++ LF+  L+   T+E L   F Q+G L           K+ + + F+ +   +
Sbjct: 7   PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66

Query: 282 ERDGAVKAM-EEMNGKDLEGEN-IEIVFAKPPDQKRKERK-----AQRQAAKNQMYDDYY 334
           E D A+ A   +++G+ +E +  +    ++ P      +K      +    ++ + D + 
Sbjct: 67  EVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 126

Query: 335 YYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYD------YYGYDYHNYRGGYEDPYY 388
            YG   +      RG G + G+ +    +   D  D      Y+  + HN          
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVT--FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184

Query: 389 GYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAG-YSQRGGPGSARGVRGARGGAQQQ 447
                    RGR G G  G     G G     GR G +S RGG G +RG  G  G     
Sbjct: 185 EMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244

Query: 448 RGRG 451
            G G
Sbjct: 245 NGFG 248



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 65  EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 122
           +IFVG I  D  E  L   FE+ G I  + +M D  +G  RG+AFVTF   ++  + V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163


>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
           sapiens]
          Length = 448

 Score = 77.4 bits (189), Expect = 3e-14
 Identities = 43/147 (29%), Positives = 82/147 (55%), Gaps = 10/147 (6%)

Query: 65  EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 124
           ++F+G+IPR+L E +L PLFE+ G I++L ++ D  TG+++G AF+T+C +E+A +A   
Sbjct: 55  KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114

Query: 125 YNNHEIRSGKHIGVCISVANN-------RLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
            +  +   G +  + +  A++       +LFVG + K ++++ +   F +    + +  +
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLF-EAFGNIEECTI 173

Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQA 204
              PD   K  G  F++Y  H  A  A
Sbjct: 174 LRGPDGNSK--GCAFVKYSSHAEAQAA 198



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 76/330 (23%), Positives = 128/330 (38%), Gaps = 52/330 (15%)

Query: 146 RLFVGSIPKS---KTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 202
           +LF+G IP++   K  + + EEF K+ E     +   +      ++G  FL Y + ++A 
Sbjct: 55  KLFIGQIPRNLDEKDLKPLFEEFGKIYE-----LTVLKDRFTGMHKGCAFLTYCERESAL 109

Query: 203 QARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQ 262
           +A+  L   K     N         ++  D E   + + LFV  L    +E+ + + F  
Sbjct: 110 KAQSALHEQKTLPGMNRPI-----QVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEA 164

Query: 263 FGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNG-KDLEGENIEIVFA-KPPDQ 313
           FG +E    L       K  AF+ +     A  A+  ++G + + G +  +V      D+
Sbjct: 165 FGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDK 224

Query: 314 KRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYG 373
           +R  R+ Q+ A +  M++      P  +P           G YG     Y          
Sbjct: 225 ERTMRRMQQMAGQMGMFN------PMAIP----------FGAYG----AYAQALMQQQAA 264

Query: 374 YDYHNYRGGYEDPYYGY---EDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGG 430
                 +GGY +P   +   +  Q+ A    G  A    P+ G G+ PP    G +    
Sbjct: 265 LMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSG-GSTPP----GITAPAV 319

Query: 431 PG--SARGVRGARGGAQQQRGRGQGKGVEA 458
           P   S  GV G  G   Q  G+   + V A
Sbjct: 320 PSIPSPIGVNGFTGLPPQANGQPAAEAVFA 349



 Score = 36.6 bits (83), Expect = 0.050
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 20/117 (17%)

Query: 209 MSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLER 268
           M+G     GN  T+    P++D D      +K LF+  +   + E+ L+  F +FGK+  
Sbjct: 33  MNGLSHSPGNPSTI----PMKDHDA-----IK-LFIGQIPRNLDEKDLKPLFEEFGKIYE 82

Query: 269 VKKLKD--------YAFIHFDERDGAVKAMEEMN-GKDLEGENIEIVFAKPPDQKRK 316
           +  LKD         AF+ + ER+ A+KA   ++  K L G N  I   KP D + +
Sbjct: 83  LTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ-VKPADSESR 138


>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
          Length = 465

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 46/155 (29%), Positives = 84/155 (54%), Gaps = 10/155 (6%)

Query: 65  EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 124
           ++FVG+IPR L E +L P+FE+ G I++L ++ D  TGL++G AF+T+C +++A +A   
Sbjct: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67

Query: 125 YNNHEIRSGKHIGVCISVANN-------RLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
            +  +   G +  + +  A++       +LFVG + K +T E + + F      + +  +
Sbjct: 68  LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTV 126

Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGK 212
              PD   K  G  F++++ H  A  A   L S +
Sbjct: 127 LRGPDGTSK--GCAFVKFQTHAEAQAAINTLHSSR 159



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 25/193 (12%)

Query: 146 RLFVGSIPK---SKTKEQILEEFSKVTEGLTDVILYHQPDDKKK--NRGFCFLEYEDHKT 200
           +LFVG IP+    K  + I E+F ++ E LT +       DK    ++G  FL Y    +
Sbjct: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFE-LTVI------KDKYTGLHKGCAFLTYCARDS 60

Query: 201 AAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAF 260
           A +A+  L   K     N         ++  D E   + + LFV  L    T+E + K F
Sbjct: 61  ALKAQSALHEQKTLPGMNRPI-----QVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMF 115

Query: 261 SQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEM-NGKDLEGENIEIVFAKPPD 312
             FG ++    L       K  AF+ F     A  A+  + + + L G +  +V      
Sbjct: 116 EPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADT 175

Query: 313 QKRKERKAQRQAA 325
           +K +  +  +Q A
Sbjct: 176 EKERGLRRMQQVA 188



 Score = 32.3 bits (72), Expect = 0.94
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 242 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 293
           +F+ +L    T+  + + F  FG +   K   D        + F+ FD    A  A++ M
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441

Query: 294 NGKDLEGENIEIVFAKPPDQKR 315
           NG  +  + +++   +P D  R
Sbjct: 442 NGFQIGMKRLKVQLKRPKDANR 463


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,721,090
Number of Sequences: 37866
Number of extensions: 1226910
Number of successful extensions: 9676
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 387
Number of HSP's that attempted gapping in prelim test: 5296
Number of HSP's gapped (non-prelim): 3247
length of query: 464
length of database: 18,247,518
effective HSP length: 106
effective length of query: 358
effective length of database: 14,233,722
effective search space: 5095672476
effective search space used: 5095672476
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.