Guide to the Human Genome
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Name: MFSD8 Sequence: fasta or formatted (518aa) NCBI GI: 22749525
Description:

major facilitator superfamily domain containing 8

Referenced in:

Lysosomes and Related Organelles
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         36           2
 C cysteine            1.5          8           1
 D aspartate           2.5         13           2
 E glutamate           4.6         24           2
 F phenylalanine       4.4         23           2
 G glycine             8.1         42           2
 H histidine           1.4          7           1
 I isoleucine          9.7         50           3
 K lysine              2.9         15           2
 L leucine            12.2         63           2
 M methionine          2.9         15           2
 N asparagine          3.5         18           2
 P proline             4.4         23           1
 Q glutamine           3.9         20           1
 R arginine            3.9         20           1
 S serine              7.1         37           2
 T threonine           5.4         28           2
 V valine              7.7         40           2
 W tryptophan          2.9         15           1
 Y tyrosine            4.1         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   major facilitator superfamily domain containing 8 [H... 
MFSD9                 0.034   major facilitator superfamily domain containing 9 [...
MFSD10                0.026   major facilitator superfamily domain containing 10 ...
MFSD10                0.026   major facilitator superfamily domain containing 10 ...
SLC22A18              0.024   tumor suppressing subtransferable candidate 5 [Homo...
SLC22A18              0.024   tumor suppressing subtransferable candidate 5 [Homo...
SLC18A2               0.020   solute carrier family 18 (vesicular monoamine), memb...
SV2C                  0.010   synaptic vesicle glycoprotein 2C 
C6orf192              0.009   hypothetical protein LOC116843 
SVOP                  0.009   SV2 related protein 
UNC93A                0.009   unc-93 homolog A isoform 1 
UNC93A                0.009   unc-93 homolog A isoform 2 
SLC2A1                0.008   solute carrier family 2 (facilitated glucose transp...
CXCR5                 0.007   Burkitt lymphoma receptor 1 isoform 1 
CXCR5                 0.007   Burkitt lymphoma receptor 1 isoform 2 
SLC18A3               0.007   vesicular acetylcholine transporter 
SLC16A12              0.007   solute carrier family 16 (monocarboxylic acid trans...
SPNS2                 0.007   spinster homolog 2 
HIAT1                 0.007   hippocampus abundant transcript 1 
ADRA1D                0.006   alpha-1D-adrenergic receptor 
TAPBP                 0.005   tapasin isoform 1 precursor 
TAPBP                 0.005   tapasin isoform 3 precursor 
TAPBP                 0.005   tapasin isoform 2 precursor 
SLC20A2               0.005   solute carrier family 20, member 2 
SLC2A3                0.005   solute carrier family 2 (facilitated glucose transpor...
SPNS1                 0.005   spinster homolog 1 isoform 4 
DIRC2                 0.005   disrupted in renal carcinoma 2 
SPNS1                 0.004   spinster homolog 1 isoform 3 
SPNS1                 0.004   spinster homolog 1 isoform 1 
SPNS1                 0.004   spinster homolog 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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