Guide to the Human Genome
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Name: KRT222P Sequence: fasta or formatted (295aa) NCBI GI: 22748757
Description:

truncated type I keratin KA21

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         15           2
 C cysteine            1.0          3           1
 D aspartate           3.7         11           1
 E glutamate          13.9         41           2
 F phenylalanine       1.7          5           2
 G glycine             3.7         11           2
 H histidine           3.1          9           2
 I isoleucine          7.5         22           2
 K lysine              8.5         25           2
 L leucine            10.5         31           2
 M methionine          2.0          6           1
 N asparagine          4.1         12           1
 P proline             2.7          8           2
 Q glutamine           6.4         19           1
 R arginine            6.1         18           2
 S serine              6.1         18           1
 T threonine           6.1         18           2
 V valine              5.1         15           1
 W tryptophan          0.7          2           1
 Y tyrosine            2.0          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   truncated type I keratin KA21 
KRT34                 0.153   keratin 34 
KRT33A                0.146   keratin 33A 
KRT15                 0.144   keratin 15 
KRT33B                0.144   type I hair keratin 3B 
KRT31                 0.144   keratin 31 
KRT36                 0.143   keratin 36 
KRT14                 0.141   keratin 14 
KRT16                 0.141   keratin 16 
KRT12                 0.135   keratin 12 
KRT17                 0.135   keratin 17 
KRT37                 0.134   keratin 37 
KRT13                 0.134   keratin 13 isoform a 
KRT32                 0.132   keratin 32 
KRT35                 0.132   keratin 35 
KRT38                 0.130   keratin 38 
KRT13                 0.130   keratin 13 isoform b 
BFSP2                 0.130   phakinin 
KRT20                 0.128   keratin 20 
KRT18                 0.126   keratin 18 
KRT18                 0.126   keratin 18 
KRT10                 0.126   keratin 10 
KRT39                 0.121   type I hair keratin KA35 
KRT19                 0.121   keratin 19 
KRT8                  0.119   keratin 8 
KRT40                 0.117   type I hair keratin KA36 
PRPH                  0.116   peripherin 
NEFL                  0.114   neurofilament, light polypeptide 68kDa 
KRT9                  0.112   keratin 9 
NEFM                  0.112   neurofilament, medium polypeptide 150kDa isoform 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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