JRKL 15139

Name: JRKL	Sequence: fasta or formatted (524aa)		NCBI GI: 22547224
Description: jerky homolog-like		Referenced in: DNA Transposon and Retrovirus-related Sequences
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.3 33 3 C cysteine 1.3 7 2 D aspartate 5.7 30 2 E glutamate 8.4 44 4 F phenylalanine 3.4 18 3 G glycine 5.0 26 2 H histidine 1.3 7 1 I isoleucine 7.1 37 2 K lysine 8.8 46 2 L leucine 9.9 52 3 M methionine 2.3 12 1 N asparagine 5.3 28 2 P proline 3.8 20 2 Q glutamine 4.2 22 2 R arginine 5.9 31 2 S serine 6.9 36 3 T threonine 5.0 26 2 V valine 5.2 27 2 W tryptophan 1.9 10 1 Y tyrosine 2.3 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 jerky homolog-like TIGD2 0.634 tigger transposable element derived 2 JRK 0.274 jerky isoform a JRK 0.274 jerky isoform b TIGD7 0.216 tigger transposable element derived 7 TIGD1 0.189 hypothetical protein LOC200765 TIGD6 0.150 hypothetical protein LOC81789 TIGD4 0.145 tigger transposable element derived 4 TIGD5 0.131 tigger transposable element derived 5 LOC100293487 0.090 PREDICTED: similar to cag CENPB 0.090 centromere protein B LOC100291289 0.088 PREDICTED: hypothetical protein XP_002347296 LOC100287896 0.088 PREDICTED: hypothetical protein XP_002343159 TIGD3 0.079 tigger transposable element derived 3 MGC16385 0.037 hypothetical protein LOC92806 POGK 0.024 pogo transposable element with KRAB domain POGZ 0.010 pogo transposable element with ZNF domain isoform 1 ... POGZ 0.010 pogo transposable element with ZNF domain isoform 2 ... ABCC9 0.010 ATP-binding cassette, sub-family C, member 9 isofor... ABCC9 0.010 ATP-binding cassette, sub-family C, member 9 isofor... ABCC9 0.010 ATP-binding cassette, sub-family C, member 9 isofor... RAPH1 0.008 Ras association and pleckstrin homology domains 1 is... SLC39A6 0.007 solute carrier family 39 (zinc transporter), member... SLC39A6 0.007 solute carrier family 39 (zinc transporter), member... SMARCA4 0.007 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.007 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.007 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.007 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.007 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.007 SWI/SNF-related matrix-associated actin-dependent r... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.