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Search of human proteins with 222144262
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|222144262 proteasome beta 5 subunit isoform 3 [Homo sapiens]
(203 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|222144262 proteasome beta 5 subunit isoform 3 [Homo sapiens] 412 e-115
gi|4506201 proteasome beta 5 subunit isoform 1 [Homo sapiens] 340 6e-94
gi|73747875 proteasome beta 8 subunit isoform E2 proprotein [Hom... 188 3e-48
gi|4758970 proteasome beta 8 subunit isoform E1 proprotein [Homo... 188 3e-48
gi|195539356 proteasome beta 5 subunit isoform 2 [Homo sapiens] 137 5e-33
gi|153791216 proteasome beta 11 subunit [Homo sapiens] 133 1e-31
gi|23110925 proteasome beta 6 subunit [Homo sapiens] 69 4e-12
gi|23110932 proteasome beta 9 subunit isoform 2 proprotein [Homo... 62 3e-10
gi|4506205 proteasome beta 9 subunit isoform 1 proprotein [Homo ... 62 3e-10
gi|4506191 proteasome beta 10 subunit proprotein [Homo sapiens] 60 1e-09
gi|4506203 proteasome beta 7 subunit proprotein [Homo sapiens] 58 6e-09
gi|4506193 proteasome beta 1 subunit [Homo sapiens] 39 0.003
gi|22538465 proteasome beta 3 subunit [Homo sapiens] 39 0.004
gi|22538467 proteasome beta 4 subunit [Homo sapiens] 38 0.007
gi|68303563 proteasome alpha 8 subunit isoform 2 [Homo sapiens] 29 2.4
gi|169217837 PREDICTED: similar to hCG1773549 [Homo sapiens] 29 3.1
gi|34577122 nuclear factor kappa-B, subunit 1 [Homo sapiens] 28 4.1
gi|31791040 keratin associated protein 6-2 [Homo sapiens] 28 4.1
gi|4506189 proteasome alpha 7 subunit [Homo sapiens] 28 5.3
gi|148839346 seizure related 6 homolog isoform 2 [Homo sapiens] 28 7.0
gi|148839280 seizure related 6 homolog isoform 1 [Homo sapiens] 28 7.0
gi|239754849 PREDICTED: hypothetical protein [Homo sapiens] 27 9.1
gi|239749388 PREDICTED: hypothetical protein [Homo sapiens] 27 9.1
gi|239743523 PREDICTED: hypothetical protein XP_002342881 [Homo ... 27 9.1
>gi|222144262 proteasome beta 5 subunit isoform 3 [Homo sapiens]
Length = 203
Score = 412 bits (1059), Expect = e-115
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MALASVLERPLPVNQRGFFGLGGRADLLDLGPGSLSDGLSLAAPGWGVPEEPGIEMLHGT 60
MALASVLERPLPVNQRGFFGLGGRADLLDLGPGSLSDGLSLAAPGWGVPEEPGIEMLHGT
Sbjct: 1 MALASVLERPLPVNQRGFFGLGGRADLLDLGPGSLSDGLSLAAPGWGVPEEPGIEMLHGT 60
Query: 61 TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR 120
TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR
Sbjct: 61 TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR 120
Query: 121 QCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPVSEVLCLKPKSF 180
QCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPVSEVLCLKPKSF
Sbjct: 121 QCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPVSEVLCLKPKSF 180
Query: 181 GMYLFCGCAERIGNMARPLLRGQ 203
GMYLFCGCAERIGNMARPLLRGQ
Sbjct: 181 GMYLFCGCAERIGNMARPLLRGQ 203
>gi|4506201 proteasome beta 5 subunit isoform 1 [Homo sapiens]
Length = 263
Score = 340 bits (871), Expect = 6e-94
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MALASVLERPLPVNQRGFFGLGGRADLLDLGPGSLSDGLSLAAPGWGVPEEPGIEMLHGT 60
MALASVLERPLPVNQRGFFGLGGRADLLDLGPGSLSDGLSLAAPGWGVPEEPGIEMLHGT
Sbjct: 1 MALASVLERPLPVNQRGFFGLGGRADLLDLGPGSLSDGLSLAAPGWGVPEEPGIEMLHGT 60
Query: 61 TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR 120
TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR
Sbjct: 61 TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR 120
Query: 121 QCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGP 168
QCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGP
Sbjct: 121 QCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGP 168
>gi|73747875 proteasome beta 8 subunit isoform E2 proprotein [Homo
sapiens]
Length = 276
Score = 188 bits (477), Expect = 3e-48
Identities = 88/115 (76%), Positives = 104/115 (90%)
Query: 54 IEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSF 113
IEM HGTTTLAFKF+HGVI A DSRA+AG+YI++ V KVIEINPYLLGTM+G AADC +
Sbjct: 67 IEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQY 126
Query: 114 WERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGP 168
WERLLA++CR+Y LRN ERISV+AASKLL+NM+ QY+GMGLSMG+MICGWDK+GP
Sbjct: 127 WERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGP 181
>gi|4758970 proteasome beta 8 subunit isoform E1 proprotein [Homo
sapiens]
Length = 272
Score = 188 bits (477), Expect = 3e-48
Identities = 88/115 (76%), Positives = 104/115 (90%)
Query: 54 IEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSF 113
IEM HGTTTLAFKF+HGVI A DSRA+AG+YI++ V KVIEINPYLLGTM+G AADC +
Sbjct: 63 IEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQY 122
Query: 114 WERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGP 168
WERLLA++CR+Y LRN ERISV+AASKLL+NM+ QY+GMGLSMG+MICGWDK+GP
Sbjct: 123 WERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGP 177
>gi|195539356 proteasome beta 5 subunit isoform 2 [Homo sapiens]
Length = 160
Score = 137 bits (346), Expect = 5e-33
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 104 MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 163
MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW
Sbjct: 1 MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 60
Query: 164 DKRGP 168
DKRGP
Sbjct: 61 DKRGP 65
>gi|153791216 proteasome beta 11 subunit [Homo sapiens]
Length = 300
Score = 133 bits (334), Expect = 1e-31
Identities = 66/135 (48%), Positives = 93/135 (68%), Gaps = 9/135 (6%)
Query: 43 APGWGVPE--EP-------GIEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKV 93
A GW VP +P G + HGTTTLAF+FRHGVI AAD+R++ G+Y+A KV
Sbjct: 24 AGGWAVPRGCDPQTFLQIHGPRLAHGTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKV 83
Query: 94 IEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMG 153
I ++ +LLGT +G +ADC+ W R+L R+ R+ ELR + SVA+A+KLL+ M+ QY+G+
Sbjct: 84 IPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLD 143
Query: 154 LSMGTMICGWDKRGP 168
L + T +CGWD+ GP
Sbjct: 144 LCVATALCGWDRSGP 158
>gi|23110925 proteasome beta 6 subunit [Homo sapiens]
Length = 239
Score = 68.6 bits (166), Expect = 4e-12
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 43 APGWG----VPEEPGIEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINP 98
AP WG P+ E+ GTT +A +F GV++ ADSR T G+YIA++ K+ I+
Sbjct: 14 APAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHD 73
Query: 99 YLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGT 158
+ +G AAD + Q + + E V A+ L M Y+Y+ L G
Sbjct: 74 RIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGI 132
Query: 159 MICGWD 164
+I GWD
Sbjct: 133 IIAGWD 138
>gi|23110932 proteasome beta 9 subunit isoform 2 proprotein [Homo
sapiens]
Length = 209
Score = 62.4 bits (150), Expect = 3e-10
Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 55 EMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFW 114
E+ GTT +A +F GV++ +DSR +AG + ++ K+ ++ + ++G AAD
Sbjct: 6 EVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAV 65
Query: 115 ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKR------GP 168
+ A Q ++ + +E V AA+ ++ N+ Y+Y+ LS M+ GWD+R G
Sbjct: 66 ADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVYGT 124
Query: 169 VSEVLCLKPKSFG 181
+ +L +P + G
Sbjct: 125 LGGMLTRQPFAIG 137
>gi|4506205 proteasome beta 9 subunit isoform 1 proprotein [Homo
sapiens]
Length = 219
Score = 62.4 bits (150), Expect = 3e-10
Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 55 EMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFW 114
E+ GTT +A +F GV++ +DSR +AG + ++ K+ ++ + ++G AAD
Sbjct: 16 EVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAV 75
Query: 115 ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKR------GP 168
+ A Q ++ + +E V AA+ ++ N+ Y+Y+ LS M+ GWD+R G
Sbjct: 76 ADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVYGT 134
Query: 169 VSEVLCLKPKSFG 181
+ +L +P + G
Sbjct: 135 LGGMLTRQPFAIG 147
>gi|4506191 proteasome beta 10 subunit proprotein [Homo sapiens]
Length = 273
Score = 60.1 bits (144), Expect = 1e-09
Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 52 PGIEMLH----GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGG 107
PG+++ H GTT F+ GVI+ AD+RAT + +A ++ +K+ I P + AG
Sbjct: 28 PGLKVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGV 87
Query: 108 AADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKG-MGLSMGTMICGWDKR 166
AAD R++A + ++ L VA +++L +++Y+G +G S+ ++ G D
Sbjct: 88 AADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASL--IVGGVDLT 145
Query: 167 GP 168
GP
Sbjct: 146 GP 147
>gi|4506203 proteasome beta 7 subunit proprotein [Homo sapiens]
Length = 277
Score = 57.8 bits (138), Expect = 6e-09
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 118
GTT ++ G+++ AD+RAT G +A + K+ I+P + AG AAD +L+
Sbjct: 43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102
Query: 119 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGP 168
+ ++ L V A+++L M+++Y+G + ++ G D GP
Sbjct: 103 SSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGP 151
>gi|4506193 proteasome beta 1 subunit [Homo sapiens]
Length = 241
Score = 38.9 bits (89), Expect = 0.003
Identities = 24/112 (21%), Positives = 54/112 (48%)
Query: 56 MLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWE 115
+ +G T LA IVA+D+R + G I ++ K ++ + +G DC
Sbjct: 34 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLT 93
Query: 116 RLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRG 167
+++ + ++Y+ N + ++ A + +L+ ++Y + + +I G D+ G
Sbjct: 94 KIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEG 145
>gi|22538465 proteasome beta 3 subunit [Homo sapiens]
Length = 205
Score = 38.5 bits (88), Expect = 0.004
Identities = 26/109 (23%), Positives = 50/109 (45%)
Query: 58 HGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERL 117
+G +A K ++ V +AAD R A + + +K+ + L +AG A D +
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66
Query: 118 LARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKR 166
L + +YEL+ +I ++AN++Y+ + +I G D +
Sbjct: 67 LKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPK 115
>gi|22538467 proteasome beta 4 subunit [Homo sapiens]
Length = 264
Score = 37.7 bits (86), Expect = 0.007
Identities = 17/65 (26%), Positives = 36/65 (55%)
Query: 56 MLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWE 115
M+ GT+ L KF GV++AAD + G+ + + +++ +N + +G AD + +
Sbjct: 50 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLK 109
Query: 116 RLLAR 120
++L +
Sbjct: 110 QVLGQ 114
>gi|68303563 proteasome alpha 8 subunit isoform 2 [Homo sapiens]
Length = 250
Score = 29.3 bits (64), Expect = 2.4
Identities = 20/113 (17%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 118
G+T + + + V++ + ++ A +TV+K+ ++ ++ AG AD
Sbjct: 31 GSTAVGIRGTNIVVLGVEKKSVAKLQ-DERTVRKICALDDHVCMAFAGLTADARVVINRA 89
Query: 119 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMG----LSMGTMICGWDKRG 167
+C+ ++L ++ ++V ++ +A + +Y + +I G+D G
Sbjct: 90 RVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDG 142
>gi|169217837 PREDICTED: similar to hCG1773549 [Homo sapiens]
Length = 120
Score = 28.9 bits (63), Expect = 3.1
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 43 APGWGVPEEPGIEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVK 91
APG G+ GI + GT A KF+ V + AD ++T+ AY+ +++
Sbjct: 59 APGQGLEWMGGIIPIFGTANYAQKFQGRVTITAD-KSTSTAYMELSSLR 106
>gi|34577122 nuclear factor kappa-B, subunit 1 [Homo sapiens]
Length = 969
Score = 28.5 bits (62), Expect = 4.1
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 17 GFFGLGGRADLLDLGPGSLSDGLSLAAPGWGVPEEPGIEMLHGTTTLAFKFRHGVI 72
G FG GG G G+ S G + P +G P GI GTT +HG +
Sbjct: 387 GMFGSGGG------GGGTGSTGPGYSFPHYGFPTYGGITFHPGTTKSNAGMKHGTM 436
>gi|31791040 keratin associated protein 6-2 [Homo sapiens]
Length = 62
Score = 28.5 bits (62), Expect = 4.1
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 149 YKGMGLSMGTMICGWDKRGPVSEVLCLKPKSFGMYLFCGCAERIGN 194
Y+G+G G++ CG+ C +G FCGC G+
Sbjct: 20 YEGLGYGYGSLRCGYSS-------CCGYGHGYGSRFFCGCGYGCGS 58
>gi|4506189 proteasome alpha 7 subunit [Homo sapiens]
Length = 248
Score = 28.1 bits (61), Expect = 5.3
Identities = 21/113 (18%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 118
G+T + + R V++ + ++ A +TV+K+ ++ + AG AD
Sbjct: 29 GSTAVGVRGRDIVVLGVEKKSVAKLQ-DERTVRKICALDDNVCMAFAGLTADARIVINRA 87
Query: 119 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMG----LSMGTMICGWDKRG 167
+C+ + L ++ ++V ++ +A++ +Y + +I G+D G
Sbjct: 88 RVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDG 140
>gi|148839346 seizure related 6 homolog isoform 2 [Homo sapiens]
Length = 993
Score = 27.7 bits (60), Expect = 7.0
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 35 LSDGLSLAAPGWGVPEEPGIEMLHGTTTLA 64
L+ GLSL AP G + PGIE G T A
Sbjct: 16 LAHGLSLEAPTVGKGQAPGIEETDGELTAA 45
>gi|148839280 seizure related 6 homolog isoform 1 [Homo sapiens]
Length = 994
Score = 27.7 bits (60), Expect = 7.0
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 35 LSDGLSLAAPGWGVPEEPGIEMLHGTTTLA 64
L+ GLSL AP G + PGIE G T A
Sbjct: 16 LAHGLSLEAPTVGKGQAPGIEETDGELTAA 45
>gi|239754849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 27.3 bits (59), Expect = 9.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 100 LLGTMAGGAADCSFWERLLARQCR 123
LL AGG DCSF +LL CR
Sbjct: 31 LLDKPAGGGRDCSFSSQLLLLLCR 54
>gi|239749388 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 27.3 bits (59), Expect = 9.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 100 LLGTMAGGAADCSFWERLLARQCR 123
LL AGG DCSF +LL CR
Sbjct: 31 LLDKPAGGGRDCSFSSQLLLLLCR 54
>gi|239743523 PREDICTED: hypothetical protein XP_002342881 [Homo
sapiens]
Length = 113
Score = 27.3 bits (59), Expect = 9.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 100 LLGTMAGGAADCSFWERLLARQCR 123
LL AGG DCSF +LL CR
Sbjct: 31 LLDKPAGGGRDCSFSSQLLLLLCR 54
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,614,575
Number of Sequences: 37866
Number of extensions: 317566
Number of successful extensions: 646
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 25
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.