ARID4A 1488

Name: ARID4A	Sequence: fasta or formatted (1257aa)		NCBI GI: 115334677
Description: retinoblastoma-binding protein 1 isoform I		Referenced in: Nonhistone Chromosomal Proteins RB1 and Related Functions
Other entries for this name: alt prot [1203aa] retinoblastoma-binding protein 1 isoform II alt prot [1188aa] retinoblastoma-binding protein 1 isoform III
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.4 55 3 C cysteine 1.4 17 1 D aspartate 7.6 95 3 E glutamate 13.4 169 4 F phenylalanine 1.9 24 1 G glycine 4.4 55 2 H histidine 1.4 18 3 I isoleucine 4.9 61 2 K lysine 11.0 138 3 L leucine 7.6 95 3 M methionine 1.6 20 1 N asparagine 4.7 59 1 P proline 4.5 56 2 Q glutamine 3.5 44 2 R arginine 5.2 65 3 S serine 10.0 126 4 T threonine 4.9 62 2 V valine 5.2 65 2 W tryptophan 0.6 8 1 Y tyrosine 2.0 25 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 retinoblastoma-binding protein 1 isoform I ARID4A 0.935 retinoblastoma-binding protein 1 isoform II ARID4A 0.879 retinoblastoma-binding protein 1 isoform III ARID4B 0.365 AT rich interactive domain 4B isoform 1 ARID4B 0.304 AT rich interactive domain 4B isoform 2 ARID3B 0.024 AT rich interactive domain 3B ANKRD12 0.024 ankyrin repeat domain 12 isoform 2 ANKRD12 0.024 ankyrin repeat domain 12 isoform 1 ARID3C 0.024 AT rich interactive domain 3C (BRIGHT- like) ARID5B 0.022 AT rich interactive domain 5B (MRF1-like) ARID3A 0.020 AT rich interactive domain 3A (BRIGHT- like) protein ... RIF1 0.019 RAP1 interacting factor 1 NEFM 0.019 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFM 0.019 neurofilament, medium polypeptide 150kDa isoform 2 ... ARID5A 0.019 AT rich interactive domain 5A RBM25 0.018 RNA binding motif protein 25 LOC283685 0.018 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC283685 0.018 PREDICTED: golgi autoantigen, golgin subfamily a-li... NOLC1 0.018 nucleolar and coiled-body phosphoprotein 1 CCDC88A 0.018 coiled-coil domain containing 88A isoform 2 RBBP6 0.017 retinoblastoma-binding protein 6 isoform 2 RBBP6 0.017 retinoblastoma-binding protein 6 isoform 1 ARID1B 0.017 AT rich interactive domain 1B (SWI1-like) isoform 2 ... ARID1B 0.017 AT rich interactive domain 1B (SWI1-like) isoform 3 ... CCDC88A 0.017 coiled-coil domain containing 88A isoform 1 CENPE 0.017 centromere protein E BOD1L 0.016 biorientation of chromosomes in cell division 1-like... NEFH 0.016 neurofilament, heavy polypeptide 200kDa CALD1 0.016 caldesmon 1 isoform 1 EIF5B 0.016 eukaryotic translation initiation factor 5B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.