Guide to the Human Genome
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Name: CDCA4 Sequence: fasta or formatted (241aa) NCBI GI: 22027511
Description:

cell division cycle associated 4

Not currently referenced in the text

Other entries for this name:
alt mRNA {241aa} cell division cycle associated 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         18           2
 C cysteine            3.3          8           1
 D aspartate           5.8         14           1
 E glutamate           8.3         20           2
 F phenylalanine       1.7          4           1
 G glycine             8.7         21           2
 H histidine           2.9          7           1
 I isoleucine          2.1          5           1
 K lysine              2.9          7           1
 L leucine            11.6         28           2
 M methionine          3.3          8           2
 N asparagine          1.7          4           1
 P proline             6.6         16           1
 Q glutamine           5.0         12           1
 R arginine            5.4         13           1
 S serine              8.3         20           3
 T threonine           5.8         14           1
 V valine              6.6         16           2
 W tryptophan          1.2          3           1
 Y tyrosine            1.2          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cell division cycle associated 4 
CDCA4                 1.000   cell division cycle associated 4 
SERTAD2               0.079   SERTA domain containing 2 
SERTAD1               0.060   SERTA domain containing 1 
SERTAD3               0.017   RPA-binding trans-activator 
SERTAD3               0.017   RPA-binding trans-activator 
C1orf112              0.017   hypothetical protein LOC55732 
SERTAD4               0.015   SERTA domain containing 4 
LOC100293927          0.013   PREDICTED: hypothetical protein 
LOC100290226          0.013   PREDICTED: hypothetical protein XP_002347217 
LOC100288718          0.013   PREDICTED: hypothetical protein XP_002343085 
PTPRZ1                0.013   protein tyrosine phosphatase, receptor-type, zeta1 p...
LOC100292655          0.013   PREDICTED: similar to armadillo repeat containing, ...
RAI2                  0.013   retinoic acid induced 2 
ZFC3H1                0.011   proline/serine-rich coiled-coil 2 
BSPRY                 0.006   B-box and SPRY domain containing 
AGRN                  0.006   agrin 
MEFV                  0.006   Mediterranean fever protein 
ARHGEF10L             0.006   Rho guanine nucleotide exchange factor (GEF) 10-like...
ARHGEF10L             0.006   Rho guanine nucleotide exchange factor (GEF) 10-like...
ECE2                  0.006   endothelin converting enzyme 2 isoform D 
RTN1                  0.006   reticulon 1 isoform A 
CPNE1                 0.006   copine I isoform a 
CPNE1                 0.006   copine I isoform a 
CPNE1                 0.006   copine I isoform a 
CPNE1                 0.006   copine I isoform a 
CPNE1                 0.006   copine I isoform a 
CPNE1                 0.006   copine I isoform a 
CPNE1                 0.006   copine I isoform a 
CPNE1                 0.006   copine I isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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