Guide to the Human Genome
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Name: CPNE1 Sequence: fasta or formatted (537aa) NCBI GI: 23397708
Description:

copine I isoform a

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt prot [542aa] copine I isoform b
alt mRNA [537aa] copine I isoform a
alt mRNA [537aa] copine I isoform a
alt mRNA [537aa] copine I isoform a
alt mRNA [537aa] copine I isoform a
alt mRNA [537aa] copine I isoform a
alt mRNA [537aa] copine I isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         43           3
 C cysteine            2.0         11           1
 D aspartate           6.5         35           3
 E glutamate           4.7         25           1
 F phenylalanine       5.0         27           2
 G glycine             7.6         41           3
 H histidine           2.2         12           1
 I isoleucine          3.9         21           2
 K lysine              4.3         23           3
 L leucine             8.8         47           4
 M methionine          1.5          8           1
 N asparagine          3.5         19           2
 P proline             6.5         35           2
 Q glutamine           6.3         34           2
 R arginine            4.7         25           2
 S serine              7.3         39           2
 T threonine           4.8         26           1
 V valine              8.2         44           2
 W tryptophan          1.1          6           1
 Y tyrosine            3.0         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   copine I isoform a 
CPNE1                 1.000   copine I isoform a 
CPNE1                 1.000   copine I isoform a 
CPNE1                 1.000   copine I isoform a 
CPNE1                 1.000   copine I isoform a 
CPNE1                 1.000   copine I isoform a 
CPNE1                 1.000   copine I isoform a 
CPNE1                 1.000   copine I isoform b 
CPNE3                 0.674   copine III 
CPNE2                 0.593   copine II 
CPNE4                 0.488   copine IV 
CPNE7                 0.487   copine 7 isoform a 
CPNE6                 0.473   copine 6 
CPNE8                 0.468   copine VIII 
CPNE5                 0.453   copine V 
CPNE9                 0.437   copine-like protein 
CPNE7                 0.401   copine 7 isoform b 
RASAL1                0.024   RAS protein activator like 1 
DOC2B                 0.022   double C2-like domains, beta 
SYT10                 0.021   synaptotagmin X 
SYT2                  0.020   synaptotagmin II 
SYT2                  0.020   synaptotagmin II 
SYT1                  0.019   synaptotagmin I 
SYT1                  0.019   synaptotagmin I 
SYT1                  0.019   synaptotagmin I 
SYT3                  0.019   synaptotagmin III 
SYT3                  0.019   synaptotagmin III 
SYT3                  0.019   synaptotagmin III 
SYT6                  0.019   synaptotagmin VI 
SYT9                  0.018   synaptotagmin IX 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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